Wall clock time and date at job start Mon Mar 30 2020 01:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47279 * 2 1 4 4 H 1.09003 * 109.47608 * 54.99441 * 3 2 1 5 5 C 1.53001 * 109.47026 * 295.00117 * 3 2 1 6 6 C 1.53000 * 109.47594 * 174.99763 * 3 2 1 7 7 S 1.81395 * 109.47296 * 184.99660 * 6 3 2 8 8 O 1.42105 * 110.54149 * 68.38083 * 7 6 3 9 9 O 1.42102 * 110.54569 * 291.62484 * 7 6 3 10 10 N 1.65606 * 104.44852 * 179.97438 * 7 6 3 11 11 C 1.47586 * 134.48958 * 90.00077 * 10 7 6 12 12 C 1.53949 * 86.11504 * 155.35964 * 11 10 7 13 13 O 1.42903 * 113.74102 * 269.15490 * 12 11 10 14 14 C 1.50694 * 113.74088 * 137.95266 * 12 11 10 15 15 H 1.08000 * 120.00563 * 1.92388 * 14 12 11 16 16 C 1.37885 * 119.99902 * 181.92552 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.47807 * 134.45609 * 269.87090 * 10 7 6 23 23 H 1.08997 * 109.46888 * 60.00176 * 1 2 3 24 24 H 1.09004 * 109.47221 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47212 * 299.99875 * 1 2 3 26 26 H 1.09001 * 109.47267 * 239.99408 * 2 1 3 27 27 H 1.08997 * 109.46888 * 119.99824 * 2 1 3 28 28 H 1.08995 * 109.47558 * 180.02562 * 5 3 2 29 29 H 1.09005 * 109.46727 * 299.99686 * 5 3 2 30 30 H 1.08995 * 109.47578 * 59.99725 * 5 3 2 31 31 H 1.08998 * 109.46555 * 64.99574 * 6 3 2 32 32 H 1.08999 * 109.47164 * 305.00007 * 6 3 2 33 33 H 1.08993 * 113.76952 * 41.05751 * 11 10 7 34 34 H 1.08995 * 113.86700 * 269.67100 * 11 10 7 35 35 H 0.96700 * 113.99800 * 178.07503 * 13 12 11 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08995 * 113.77163 * 90.38156 * 22 10 7 38 38 H 1.09005 * 113.83876 * 318.91142 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1264 -1.3073 6 6 3.5649 1.4443 0.1258 7 16 4.1572 3.1524 0.2743 8 8 3.7570 3.7126 1.5175 9 8 3.9598 3.8565 -0.9441 10 7 5.8021 3.0096 0.4023 11 6 6.9162 2.9815 -0.5653 12 6 7.7982 3.4778 0.5948 13 8 7.8848 4.9014 0.6833 14 6 9.1430 2.8017 0.6668 15 1 9.4190 2.0679 -0.0760 16 6 10.0212 3.1200 1.6810 17 7 9.6853 4.0139 2.5853 18 14 11.6880 2.2814 1.7706 19 1 12.4384 2.7956 2.9444 20 1 11.4976 0.8151 1.9079 21 1 12.4532 2.5673 0.5305 22 6 6.7436 2.8616 1.5321 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9990 3.1539 -1.3076 29 1 2.0700 1.5874 -2.1492 30 1 0.5490 2.1252 -1.3970 31 1 4.0029 0.9835 -0.7596 32 1 3.8571 0.8801 1.0114 33 1 6.8116 3.7015 -1.3768 34 1 7.1718 1.9811 -0.9146 35 1 8.4140 5.2177 1.4284 36 1 10.3030 4.2375 3.2990 37 1 6.9473 1.8252 1.8014 38 1 6.5016 3.4862 2.3920 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189065381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:01 Heat of formation + Delta-G solvation = -125.853177 kcal Electronic energy + Delta-G solvation = -20533.260709 eV Core-core repulsion = 17309.795821 eV Total energy + Delta-G solvation = -3223.464888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15346 -38.22657 -37.98795 -36.98553 -35.73711 -34.09532 -31.70732 -29.60831 -28.48837 -26.94404 -26.36656 -24.73502 -21.43792 -21.08835 -19.72359 -19.27268 -18.38019 -17.53408 -17.29240 -16.90757 -16.11957 -16.06226 -15.63302 -15.41220 -14.83785 -14.65360 -14.46290 -14.18056 -13.85086 -13.50843 -13.37559 -13.20855 -13.14262 -13.05424 -12.80393 -12.77033 -12.58124 -12.46713 -12.37636 -12.23081 -12.14441 -11.86450 -11.53468 -11.32696 -11.03547 -10.59699 -10.28316 -9.72113 -8.20027 -6.38168 -0.75248 1.50622 1.52439 1.59793 1.63395 2.43681 2.89664 2.98098 3.07385 3.43232 3.65838 3.68406 3.85700 4.19148 4.31259 4.35615 4.39154 4.52471 4.53190 4.63765 4.67467 4.73477 4.75908 4.97650 5.03876 5.04720 5.09231 5.13353 5.18189 5.26256 5.36074 5.48025 5.75588 5.83663 6.02380 6.69134 7.35134 7.49614 8.85429 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033921 B = 0.004515 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.241975 B = 6199.997560 C = 6520.802213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.088 4.088 4 H 0.077 0.923 5 C -0.187 4.187 6 C -0.602 4.602 7 S 2.612 3.388 8 O -1.002 7.002 9 O -0.986 6.986 10 N -1.038 6.038 11 C 0.136 3.864 12 C 0.212 3.788 13 O -0.591 6.591 14 C -0.553 4.553 15 H 0.080 0.920 16 C 0.027 3.973 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.288 1.288 20 H -0.264 1.264 21 H -0.274 1.274 22 C 0.110 3.890 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.384 0.616 36 H 0.273 0.727 37 H 0.098 0.902 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.284 -10.940 -4.571 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.108 4.108 4 H 0.096 0.904 5 C -0.244 4.244 6 C -0.735 4.735 7 S 2.714 3.286 8 O -0.993 6.993 9 O -0.977 6.977 10 N -0.876 5.876 11 C 0.011 3.989 12 C 0.169 3.831 13 O -0.402 6.402 14 C -0.592 4.592 15 H 0.098 0.902 16 C -0.173 4.173 17 N -0.563 5.563 18 Si 0.796 3.204 19 H -0.214 1.214 20 H -0.189 1.189 21 H -0.199 1.199 22 C -0.016 4.016 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.238 0.762 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.308 -9.994 -4.948 17.363 hybrid contribution 1.321 -0.444 0.905 1.662 sum -11.987 -10.438 -4.043 16.401 Atomic orbital electron populations 1.21890 0.94762 1.02621 1.02345 1.21535 0.96706 0.93050 1.03384 1.21062 0.89619 1.00605 0.99544 0.90441 1.22405 1.04085 1.00701 0.97176 1.30607 1.06573 1.22567 1.13753 1.04730 0.71715 0.79375 0.72791 1.93496 1.81888 1.77906 1.46043 1.93492 1.84553 1.72202 1.47458 1.60022 1.20112 1.89475 1.17985 1.23069 0.81547 1.01555 0.92729 1.20354 0.91885 0.79338 0.91538 1.86041 1.76003 1.22849 1.55329 1.21847 1.00852 1.24121 1.12353 0.90165 1.25844 1.02096 0.95126 0.94274 1.69513 1.38140 1.33369 1.15275 0.85415 0.78641 0.79025 0.77342 1.21389 1.18894 1.19878 1.23645 0.86944 1.01111 0.89926 0.91866 0.91353 0.92769 0.90410 0.90981 0.93256 0.90385 0.89296 0.82557 0.83132 0.91545 0.86425 0.76201 0.91717 0.88433 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.67 71.98 0.70 -1.40 16 2 C -0.11 -1.65 5.40 30.59 0.17 -1.48 16 3 C -0.09 -1.82 2.39 -10.80 -0.03 -1.84 16 4 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 5 C -0.19 -3.93 8.64 71.98 0.62 -3.31 16 6 C -0.60 -13.64 5.62 71.98 0.40 -13.24 16 7 S 2.61 93.51 5.58 -56.49 -0.32 93.20 16 8 O -1.00 -43.42 18.02 -127.65 -2.30 -45.72 16 9 O -0.99 -39.78 15.77 -127.65 -2.01 -41.80 16 10 N -1.04 -41.28 4.00 -532.66 -2.13 -43.41 16 11 C 0.14 5.45 8.31 86.49 0.72 6.17 16 12 C 0.21 10.28 1.40 -10.88 -0.02 10.27 16 13 O -0.59 -32.26 13.49 -148.98 -2.01 -34.26 16 14 C -0.55 -27.23 8.61 25.60 0.22 -27.01 16 15 H 0.08 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.03 1.32 5.40 84.66 0.46 1.78 16 17 N -0.92 -48.13 11.20 21.45 0.24 -47.89 16 18 Si 0.97 39.23 29.54 68.60 2.03 41.26 16 19 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 22 C 0.11 4.84 8.32 86.45 0.72 5.56 16 23 H 0.06 0.78 6.56 -2.39 -0.02 0.76 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 1.31 5.61 -2.39 -0.01 1.30 16 29 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.09 1.48 6.56 -2.39 -0.02 1.46 16 31 H 0.16 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.15 2.89 8.14 -2.39 -0.02 2.87 16 33 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.12 3.81 8.09 -2.39 -0.02 3.79 16 35 H 0.38 21.39 6.60 -74.06 -0.49 20.90 16 36 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.10 3.82 8.09 -2.39 -0.02 3.80 16 38 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -66.24 321.72 -1.98 -68.22 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: 0.56 Total: 34.91 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: 3.96 Total: -24.51 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -1.89 Total: -91.30 kcal Atomic # 8 Polarization: -115.46 SS G_CDS: -6.32 Total: -121.78 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 93.51 SS G_CDS: -0.32 Total: 93.20 kcal Total: -66.24 -1.98 -68.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189065381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.629 kcal (2) G-P(sol) polarization free energy of solvation -66.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds