Wall clock time and date at job start Mon Mar 30 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.47057 * 240.00202 * 2 1 3 5 5 O 1.20833 * 119.99954 * 239.99704 * 4 2 1 6 6 O 1.34231 * 120.00344 * 60.00187 * 4 2 1 7 7 C 1.50697 * 109.46916 * 119.99859 * 2 1 3 8 8 O 1.21290 * 119.99815 * 120.00469 * 7 2 1 9 9 N 1.34779 * 120.00388 * 300.00073 * 7 2 1 10 10 C 1.39232 * 119.99928 * 184.29550 * 9 7 2 11 11 C 1.39478 * 119.83499 * 324.70619 * 10 9 7 12 12 C 1.36379 * 120.17063 * 180.30164 * 11 10 9 13 13 C 1.40868 * 119.82546 * 359.48110 * 12 11 10 14 14 C 1.41154 * 120.16287 * 180.24969 * 13 12 11 15 15 H 1.07997 * 119.99871 * 215.01669 * 14 13 12 16 16 C 1.39908 * 119.99915 * 35.01923 * 14 13 12 17 17 N 1.30873 * 119.99774 * 355.53774 * 16 14 13 18 18 Si 1.86800 * 119.99915 * 175.54526 * 16 14 13 19 19 H 1.48501 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47466 * 119.99696 * 18 16 14 21 21 H 1.48499 * 109.46888 * 239.99839 * 18 16 14 22 22 C 1.40861 * 119.67275 * 0.52095 * 13 12 11 23 23 C 1.36374 * 119.82917 * 359.72918 * 22 13 12 24 24 H 1.08999 * 109.47260 * 299.99658 * 1 2 3 25 25 H 1.08999 * 109.47008 * 59.99787 * 1 2 3 26 26 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47018 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47494 * 299.99915 * 3 2 1 29 29 H 1.09003 * 109.47441 * 60.00642 * 3 2 1 30 30 H 0.96702 * 117.00083 * 179.97438 * 6 4 2 31 31 H 0.96997 * 120.00025 * 4.29139 * 9 7 2 32 32 H 1.08005 * 119.91591 * 0.02867 * 11 10 9 33 33 H 1.08003 * 120.08379 * 179.70188 * 12 11 10 34 34 H 0.97001 * 119.99376 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.09053 * 179.71322 * 22 13 12 36 36 H 1.08005 * 119.91503 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7271 -1.6928 -1.1196 6 8 1.7081 -0.2517 -2.4496 7 6 2.0323 -0.7104 1.2305 8 8 2.7297 -1.6965 1.1192 9 7 1.7067 -0.2499 2.4546 10 6 2.2428 -0.8517 3.5900 11 6 2.4632 -2.2288 3.6070 12 6 2.9823 -2.8262 4.7176 13 6 3.3061 -2.0471 5.8457 14 6 3.8486 -2.6573 6.9971 15 1 3.5938 -2.2829 7.9775 16 6 4.7165 -3.7471 6.8682 17 7 4.9568 -4.2560 5.6867 18 14 5.5320 -4.4758 8.3826 19 1 5.0986 -3.7246 9.5880 20 1 5.1386 -5.9012 8.5192 21 1 7.0075 -4.3805 8.2444 22 6 3.0806 -0.6569 5.8210 23 6 2.5561 -0.0745 4.7050 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 2.0542 -0.7405 -3.2089 31 1 1.0990 0.5007 2.5446 32 1 2.2181 -2.8243 2.7399 33 1 3.1479 -3.8934 4.7310 34 1 5.5582 -5.0118 5.5974 35 1 3.3220 -0.0538 6.6837 36 1 2.3830 0.9914 4.6844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215093763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:16 Heat of formation + Delta-G solvation = -104.816150 kcal Electronic energy + Delta-G solvation = -21230.992346 eV Core-core repulsion = 17872.995741 eV Total energy + Delta-G solvation = -3357.996606 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93315 -39.25766 -37.30471 -35.99540 -34.97778 -34.34241 -32.72816 -29.49970 -28.88129 -27.67253 -25.22823 -24.65206 -22.71248 -21.31699 -20.64137 -19.16187 -17.77826 -17.33569 -17.20601 -16.18929 -15.79710 -15.64627 -15.14420 -14.53221 -14.19966 -13.88527 -13.81084 -13.22992 -12.79989 -12.66424 -12.41355 -12.36558 -12.22199 -11.98743 -11.74771 -11.57807 -11.44817 -11.36524 -11.14593 -10.88132 -10.49871 -10.32288 -9.89073 -9.81648 -9.34875 -8.94488 -8.67805 -7.50890 -6.87693 -6.57359 -4.31655 2.25023 2.56351 2.74757 3.00115 3.10694 3.12332 3.17317 3.33485 3.65213 4.00692 4.50142 4.68417 4.71017 4.76951 5.10035 5.29498 5.43177 5.48225 5.52560 5.67938 5.87265 5.88462 6.13482 6.39919 6.47611 6.79748 6.99747 7.05981 7.21752 7.30864 7.64803 7.68055 7.92423 7.99331 8.11432 8.19072 8.34880 8.68799 8.76018 8.95344 9.02874 10.33649 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034726 B = 0.004028 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.122663 B = 6950.525525 C = 7486.225734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 C -0.138 4.138 4 C 0.480 3.520 5 O -0.462 6.462 6 O -0.520 6.520 7 C 0.502 3.498 8 O -0.484 6.484 9 N -0.648 5.648 10 C 0.005 3.995 11 C -0.093 4.093 12 C -0.144 4.144 13 C 0.100 3.900 14 C -0.463 4.463 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.807 5.807 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.204 4.204 23 C -0.112 4.112 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.393 0.607 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.278 0.722 35 H 0.097 0.903 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 9.848 -10.866 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.196 4.196 4 C 0.318 3.682 5 O -0.344 6.344 6 O -0.333 6.333 7 C 0.286 3.714 8 O -0.356 6.356 9 N -0.292 5.292 10 C -0.087 4.087 11 C -0.113 4.113 12 C -0.164 4.164 13 C 0.098 3.902 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.147 4.147 17 N -0.434 5.434 18 Si 0.740 3.260 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.224 4.224 23 C -0.133 4.133 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.267 0.733 31 H 0.227 0.773 32 H 0.125 0.875 33 H 0.148 0.852 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.476 8.849 -10.698 15.769 hybrid contribution 0.495 -0.225 0.085 0.550 sum -6.982 8.625 -10.613 15.355 Atomic orbital electron populations 1.21865 0.89922 1.03788 1.04111 1.20514 0.99184 0.97631 0.90326 1.21850 1.02374 0.91301 1.04054 1.22642 0.78354 0.83025 0.84144 1.90901 1.32969 1.24278 1.86299 1.84466 1.72848 1.59378 1.16627 1.19705 0.82098 0.85761 0.83874 1.90875 1.35471 1.23967 1.85297 1.42823 1.46997 1.35099 1.04304 1.17246 1.12087 0.92271 0.87054 1.20658 1.00235 0.92285 0.98139 1.21309 1.00831 1.00826 0.93408 1.17732 0.88549 0.90475 0.93450 1.19520 1.24078 1.11802 0.94009 0.90576 1.25902 0.96221 0.95455 0.97090 1.69804 1.29827 1.20188 1.23540 0.86158 0.79158 0.79035 0.81667 1.18612 1.19987 1.20007 1.20681 1.09099 0.94994 0.97623 1.20058 1.02366 0.96616 0.94214 0.90443 0.90163 0.91403 0.91418 0.90202 0.90429 0.73265 0.77288 0.87489 0.85212 0.91097 0.88512 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.30 37.16 0.31 -1.00 16 2 C -0.07 -0.91 0.81 -156.81 -0.13 -1.04 16 3 C -0.14 -1.34 8.31 37.16 0.31 -1.03 16 4 C 0.48 6.82 6.92 36.00 0.25 7.07 16 5 O -0.46 -8.93 14.94 -26.87 -0.40 -9.33 16 6 O -0.52 -5.02 13.23 -39.26 -0.52 -5.54 16 7 C 0.50 9.10 6.31 -10.99 -0.07 9.03 16 8 O -0.48 -11.50 11.61 -18.97 -0.22 -11.72 16 9 N -0.65 -11.15 5.08 -9.74 -0.05 -11.20 16 10 C 0.01 0.12 6.31 -83.57 -0.53 -0.41 16 11 C -0.09 -2.37 8.61 -39.79 -0.34 -2.71 16 12 C -0.14 -3.92 8.61 -39.26 -0.34 -4.26 16 13 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 14 C -0.46 -12.48 9.02 -37.85 -0.34 -12.82 16 15 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 16 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 17 N -0.81 -21.96 10.61 55.55 0.59 -21.37 16 18 Si 0.91 19.35 29.56 -169.99 -5.03 14.32 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.20 -4.92 9.74 -39.26 -0.38 -5.30 16 23 C -0.11 -2.43 9.90 -39.79 -0.39 -2.82 16 24 H 0.08 0.58 7.47 -51.93 -0.39 0.20 16 25 H 0.08 0.59 8.11 -51.93 -0.42 0.16 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 29 H 0.08 0.62 7.67 -51.93 -0.40 0.22 16 30 H 0.41 2.33 9.10 45.56 0.41 2.74 16 31 H 0.39 5.03 7.67 -40.82 -0.31 4.72 16 32 H 0.11 2.78 6.22 -52.48 -0.33 2.45 16 33 H 0.13 3.72 6.15 -52.48 -0.32 3.40 16 34 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.09 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -34.84 309.21 -6.72 -41.56 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -3.41 Total: 10.10 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.34 Total: -11.49 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.54 Total: -32.56 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.14 Total: -26.59 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.84 -6.72 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215093763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.255 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds