Wall clock time and date at job start Mon Mar 30 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46841 * 2 1 4 4 C 1.50696 * 109.47057 * 240.00202 * 2 1 3 5 5 O 1.20833 * 119.99954 * 239.99704 * 4 2 1 6 6 O 1.34231 * 120.00344 * 60.00187 * 4 2 1 7 7 C 1.50697 * 109.46916 * 119.99859 * 2 1 3 8 8 O 1.21290 * 119.99815 * 120.00469 * 7 2 1 9 9 N 1.34779 * 120.00388 * 300.00073 * 7 2 1 10 10 C 1.39232 * 119.99928 * 184.29550 * 9 7 2 11 11 C 1.39478 * 119.83499 * 324.70619 * 10 9 7 12 12 C 1.36379 * 120.17063 * 180.30164 * 11 10 9 13 13 C 1.40868 * 119.82546 * 359.48110 * 12 11 10 14 14 C 1.41154 * 120.16287 * 180.24969 * 13 12 11 15 15 H 1.07997 * 119.99871 * 215.01669 * 14 13 12 16 16 C 1.39908 * 119.99915 * 35.01923 * 14 13 12 17 17 N 1.30873 * 119.99774 * 355.53774 * 16 14 13 18 18 Si 1.86800 * 119.99915 * 175.54526 * 16 14 13 19 19 H 1.48501 * 109.47060 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47466 * 119.99696 * 18 16 14 21 21 H 1.48499 * 109.46888 * 239.99839 * 18 16 14 22 22 C 1.40861 * 119.67275 * 0.52095 * 13 12 11 23 23 C 1.36374 * 119.82917 * 359.72918 * 22 13 12 24 24 H 1.08999 * 109.47260 * 299.99658 * 1 2 3 25 25 H 1.08999 * 109.47008 * 59.99787 * 1 2 3 26 26 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47018 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47494 * 299.99915 * 3 2 1 29 29 H 1.09003 * 109.47441 * 60.00642 * 3 2 1 30 30 H 0.96702 * 117.00083 * 179.97438 * 6 4 2 31 31 H 0.96997 * 120.00025 * 4.29139 * 9 7 2 32 32 H 1.08005 * 119.91591 * 0.02867 * 11 10 9 33 33 H 1.08003 * 120.08379 * 179.70188 * 12 11 10 34 34 H 0.97001 * 119.99376 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.09053 * 179.71322 * 22 13 12 36 36 H 1.08005 * 119.91503 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7271 -1.6928 -1.1196 6 8 1.7081 -0.2517 -2.4496 7 6 2.0323 -0.7104 1.2305 8 8 2.7297 -1.6965 1.1192 9 7 1.7067 -0.2499 2.4546 10 6 2.2428 -0.8517 3.5900 11 6 2.4632 -2.2288 3.6070 12 6 2.9823 -2.8262 4.7176 13 6 3.3061 -2.0471 5.8457 14 6 3.8486 -2.6573 6.9971 15 1 3.5938 -2.2829 7.9775 16 6 4.7165 -3.7471 6.8682 17 7 4.9568 -4.2560 5.6867 18 14 5.5320 -4.4758 8.3826 19 1 5.0986 -3.7246 9.5880 20 1 5.1386 -5.9012 8.5192 21 1 7.0075 -4.3805 8.2444 22 6 3.0806 -0.6569 5.8210 23 6 2.5561 -0.0745 4.7050 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 2.0542 -0.7405 -3.2089 31 1 1.0990 0.5007 2.5446 32 1 2.2181 -2.8243 2.7399 33 1 3.1479 -3.8934 4.7310 34 1 5.5582 -5.0118 5.5974 35 1 3.3220 -0.0538 6.6837 36 1 2.3830 0.9914 4.6844 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215093763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:16 Heat of formation + Delta-G solvation = -129.295370 kcal Electronic energy + Delta-G solvation = -21232.053845 eV Core-core repulsion = 17872.995741 eV Total energy + Delta-G solvation = -3359.058104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17419 -40.66485 -39.04923 -37.09680 -36.20515 -36.01507 -34.48892 -31.43661 -30.74645 -28.39876 -27.02560 -25.67440 -24.17255 -23.16469 -22.29100 -20.62526 -19.24163 -18.82408 -18.70434 -17.47371 -17.13472 -16.93665 -16.81669 -15.97524 -15.75061 -15.46097 -14.87055 -14.71333 -14.51035 -14.00049 -13.85567 -13.53125 -13.34120 -13.26380 -13.17945 -13.07675 -12.87484 -12.63840 -12.54611 -12.33750 -12.31520 -11.76755 -11.65932 -11.43132 -11.16054 -10.68756 -10.36173 -9.45342 -8.75348 -8.50124 -6.33737 0.78826 1.13119 1.17862 1.38176 1.42311 1.54551 1.65457 1.78919 2.23157 2.39096 2.81398 3.47470 3.67218 3.69174 3.81051 4.22931 4.44986 4.48036 4.66778 4.68041 4.74949 4.81568 4.98250 5.12041 5.14319 5.17914 5.19447 5.34020 5.41661 5.59889 5.71206 5.86518 6.07729 6.14456 6.35089 6.66584 6.71266 6.95516 6.98330 7.02697 7.39122 8.43054 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034726 B = 0.004028 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.122663 B = 6950.525525 C = 7486.225734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.135 4.135 4 C 0.484 3.516 5 O -0.526 6.526 6 O -0.497 6.497 7 C 0.496 3.504 8 O -0.547 6.547 9 N -0.633 5.633 10 C 0.022 3.978 11 C -0.111 4.111 12 C -0.170 4.170 13 C 0.066 3.934 14 C -0.496 4.496 15 H 0.082 0.918 16 C 0.021 3.979 17 N -0.850 5.850 18 Si 0.992 3.008 19 H -0.251 1.251 20 H -0.269 1.269 21 H -0.270 1.270 22 C -0.208 4.208 23 C -0.103 4.103 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.428 0.572 31 H 0.421 0.579 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.281 0.719 35 H 0.116 0.884 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 13.304 -11.152 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C -0.193 4.193 4 C 0.324 3.676 5 O -0.413 6.413 6 O -0.311 6.311 7 C 0.283 3.717 8 O -0.423 6.423 9 N -0.280 5.280 10 C -0.072 4.072 11 C -0.131 4.131 12 C -0.191 4.191 13 C 0.064 3.936 14 C -0.527 4.527 15 H 0.100 0.900 16 C -0.190 4.190 17 N -0.479 5.479 18 Si 0.813 3.187 19 H -0.174 1.174 20 H -0.194 1.194 21 H -0.196 1.196 22 C -0.227 4.227 23 C -0.123 4.123 24 H 0.121 0.879 25 H 0.130 0.870 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.290 0.710 31 H 0.260 0.740 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.950 12.385 -11.026 18.843 hybrid contribution 0.825 -1.182 -0.045 1.442 sum -8.125 11.203 -11.071 17.723 Atomic orbital electron populations 1.21974 0.86718 1.03658 1.07002 1.20540 1.01362 0.98285 0.86603 1.21960 1.01298 0.89018 1.06975 1.23013 0.76936 0.81953 0.85652 1.90901 1.36006 1.27152 1.87290 1.84405 1.71978 1.58790 1.15943 1.20754 0.80696 0.84898 0.85398 1.90871 1.38196 1.26905 1.86340 1.42669 1.47071 1.35381 1.02859 1.17314 1.09984 0.91101 0.88777 1.20644 1.01236 0.94259 0.96968 1.21155 1.03064 0.99857 0.94981 1.18069 0.89779 0.92192 0.93600 1.19822 1.25331 1.13240 0.94276 0.89995 1.26887 0.96420 0.95465 1.00259 1.69942 1.30911 1.21022 1.25982 0.85011 0.77865 0.78220 0.77642 1.17413 1.19367 1.19553 1.20983 1.08565 0.93942 0.99244 1.20461 1.00281 0.98984 0.92530 0.87869 0.87015 0.93084 0.93266 0.87033 0.87845 0.71019 0.74049 0.89258 0.88150 0.90863 0.86609 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.30 71.98 0.60 -1.41 16 2 C -0.06 -1.45 0.81 -53.68 -0.04 -1.49 16 3 C -0.14 -2.04 8.31 71.98 0.60 -1.45 16 4 C 0.48 13.17 6.92 71.23 0.49 13.66 16 5 O -0.53 -21.00 14.94 29.70 0.44 -20.56 16 6 O -0.50 -8.17 13.23 -51.43 -0.68 -8.85 16 7 C 0.50 17.61 6.31 87.66 0.55 18.17 16 8 O -0.55 -27.07 11.61 20.38 0.24 -26.84 16 9 N -0.63 -20.36 5.08 -303.11 -1.54 -21.90 16 10 C 0.02 0.94 6.31 38.57 0.24 1.18 16 11 C -0.11 -5.89 8.61 22.13 0.19 -5.70 16 12 C -0.17 -9.89 8.61 22.48 0.19 -9.69 16 13 C 0.07 3.68 5.55 -21.28 -0.12 3.56 16 14 C -0.50 -27.57 9.02 23.39 0.21 -27.36 16 15 H 0.08 4.28 7.85 -2.91 -0.02 4.25 16 16 C 0.02 1.10 5.42 85.24 0.46 1.57 16 17 N -0.85 -48.97 10.61 21.82 0.23 -48.74 16 18 Si 0.99 40.60 29.56 68.60 2.03 42.63 16 19 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 C -0.21 -9.83 9.74 22.48 0.22 -9.61 16 23 C -0.10 -4.17 9.90 22.13 0.22 -3.95 16 24 H 0.10 1.01 7.47 -2.39 -0.02 0.99 16 25 H 0.11 1.02 8.11 -2.39 -0.02 1.00 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 1.04 8.11 -2.39 -0.02 1.02 16 29 H 0.10 1.05 7.67 -2.39 -0.02 1.03 16 30 H 0.43 3.86 9.10 -74.06 -0.67 3.18 16 31 H 0.42 8.87 7.67 -92.71 -0.71 8.16 16 32 H 0.09 4.99 6.22 -2.91 -0.02 4.97 16 33 H 0.10 6.30 6.15 -2.91 -0.02 6.28 16 34 H 0.28 14.86 8.30 -92.71 -0.77 14.09 16 35 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 36 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -83.96 309.21 4.28 -79.68 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.25 Total: 27.11 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.82 Total: -22.53 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -1.31 Total: -70.64 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: 0.00 Total: -56.24 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -83.96 4.28 -79.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215093763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.616 kcal (2) G-P(sol) polarization free energy of solvation -83.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds