Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.77606 * 2 1 4 4 C 1.55154 * 110.72039 * 236.76196 * 2 1 3 5 5 C 1.55127 * 101.48551 * 205.96722 * 4 2 1 6 6 N 1.47416 * 104.72295 * 37.29772 * 5 4 2 7 7 S 1.65606 * 125.65190 * 155.81864 * 6 5 4 8 8 O 1.42102 * 104.27169 * 330.30077 * 7 6 5 9 9 O 1.42096 * 104.27626 * 202.44155 * 7 6 5 10 10 C 1.81399 * 104.44867 * 86.36956 * 7 6 5 11 11 C 1.53002 * 109.47057 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.46973 * 180.02562 * 11 10 7 13 13 H 1.08004 * 120.00247 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99764 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00060 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99727 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47479 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46992 * 119.99828 * 16 14 12 19 19 H 1.48500 * 109.46930 * 239.99560 * 16 14 12 20 20 C 1.47029 * 108.70263 * 335.55219 * 6 5 4 21 21 H 1.08996 * 109.88203 * 120.70511 * 20 6 5 22 22 C 1.53006 * 109.88294 * 241.87250 * 20 6 5 23 23 O 1.42896 * 109.46901 * 293.86389 * 22 20 6 24 24 H 1.08991 * 109.46842 * 296.75710 * 1 2 3 25 25 H 1.08999 * 109.47161 * 56.76327 * 1 2 3 26 26 H 1.09003 * 109.46392 * 176.76132 * 1 2 3 27 27 H 1.09001 * 111.00482 * 324.20645 * 4 2 1 28 28 H 1.09007 * 111.00520 * 88.01844 * 4 2 1 29 29 H 1.09000 * 110.49406 * 278.45082 * 5 4 2 30 30 H 1.09006 * 110.34321 * 156.06353 * 5 4 2 31 31 H 1.09002 * 109.47159 * 60.00305 * 10 7 6 32 32 H 1.09003 * 109.47447 * 300.00389 * 10 7 6 33 33 H 1.08997 * 109.46997 * 60.00582 * 11 10 7 34 34 H 1.09003 * 109.47229 * 300.00424 * 11 10 7 35 35 H 0.97002 * 120.00369 * 359.97438 * 15 14 12 36 36 H 1.08995 * 109.46992 * 53.86145 * 22 20 6 37 37 H 1.08993 * 109.47044 * 173.86105 * 22 20 6 38 38 H 0.96693 * 114.00204 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 3.4666 -1.2455 -0.6861 6 7 3.2446 -1.5507 0.7389 7 16 4.1635 -2.5740 1.6614 8 8 4.6510 -3.5367 0.7368 9 8 3.3036 -2.9520 2.7277 10 6 5.5193 -1.5364 2.2743 11 6 6.4496 -2.3780 3.1503 12 6 7.5757 -1.5159 3.6600 13 1 7.6233 -0.4722 3.3862 14 6 8.5457 -2.0597 4.4751 15 7 8.4879 -3.3306 4.8082 16 14 9.9419 -0.9912 5.1063 17 1 9.7791 0.3917 4.5905 18 1 9.9184 -0.9723 6.5910 19 1 11.2384 -1.5440 4.6388 20 6 2.0760 -0.7912 1.2072 21 1 1.3130 -1.4758 1.5775 22 6 2.4944 0.1757 2.3168 23 8 2.9121 -0.5674 3.4636 24 1 -0.3633 0.4626 0.9176 25 1 -0.3633 0.5633 -0.8595 26 1 -0.3632 -1.0261 -0.0581 27 1 1.4452 -1.6536 -1.4375 28 1 2.1843 -0.1519 -2.0873 29 1 4.1947 -0.4413 -0.7930 30 1 3.8033 -2.1361 -1.2169 31 1 5.1108 -0.7147 2.8624 32 1 6.0802 -1.1353 1.4301 33 1 6.8582 -3.1994 2.5619 34 1 5.8890 -2.7795 3.9946 35 1 7.7627 -3.8854 4.4807 36 1 3.3189 0.7964 1.9660 37 1 1.6495 0.8106 2.5832 38 1 3.1917 -0.0175 4.2082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248948374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = -135.923675 kcal Electronic energy + Delta-G solvation = -21000.948323 eV Core-core repulsion = 17777.046746 eV Total energy + Delta-G solvation = -3223.901578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.32871 -36.66789 -36.04953 -35.26473 -34.14863 -32.64964 -30.90412 -30.37380 -27.36239 -24.97639 -23.99732 -22.23597 -21.52913 -20.48131 -18.43640 -17.46551 -17.19995 -16.64079 -16.50569 -15.57377 -15.07846 -14.55355 -14.21552 -13.88219 -13.78372 -13.57334 -13.41639 -13.13204 -12.73436 -12.42052 -12.19442 -11.96246 -11.87733 -11.47532 -11.37252 -11.16256 -11.11142 -10.95418 -10.93532 -10.81249 -10.41970 -10.41737 -10.21124 -10.03531 -9.95526 -8.93629 -8.51581 -8.40889 -6.42934 -4.14877 0.88611 3.12119 3.39806 3.44705 3.56880 3.98157 4.24078 4.39755 4.49050 4.54909 4.75056 4.87071 5.03623 5.14328 5.16407 5.23152 5.29627 5.33211 5.34688 5.43304 5.56474 5.70275 5.72843 5.76645 5.79571 5.83710 5.91961 6.08871 6.27504 6.48931 6.61346 7.07564 7.18315 7.71454 8.03763 8.35652 8.78153 9.57513 10.97010 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029049 B = 0.005086 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.673519 B = 5504.339340 C = 5744.127113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.123 4.123 5 C 0.111 3.889 6 N -1.011 6.011 7 S 2.610 3.390 8 O -0.976 6.976 9 O -0.939 6.939 10 C -0.579 4.579 11 C 0.017 3.983 12 C -0.596 4.596 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.908 5.908 16 Si 1.078 2.922 17 H -0.289 1.289 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.158 3.842 21 H 0.086 0.914 22 C 0.048 3.952 23 O -0.555 6.555 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.020 0.980 34 H 0.024 0.976 35 H 0.271 0.729 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 10.723 -10.596 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.104 0.896 4 C -0.162 4.162 5 C -0.015 4.015 6 N -0.847 5.847 7 S 2.709 3.291 8 O -0.966 6.966 9 O -0.930 6.930 10 C -0.712 4.712 11 C -0.022 4.022 12 C -0.636 4.636 13 H 0.072 0.928 14 C -0.190 4.190 15 N -0.544 5.544 16 Si 0.906 3.094 17 H -0.215 1.215 18 H -0.212 1.212 19 H -0.212 1.212 20 C 0.052 3.948 21 H 0.104 0.896 22 C -0.032 4.032 23 O -0.360 6.360 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -14.057 9.195 -9.883 19.489 hybrid contribution -0.885 1.264 -0.586 1.651 sum -14.942 10.459 -10.470 21.030 Atomic orbital electron populations 1.21786 0.93784 1.02448 1.02056 1.22203 0.96231 0.99354 0.93813 0.89586 1.22878 0.96040 1.00127 0.97156 1.22063 0.97390 1.00979 0.81063 1.58994 1.42154 1.63392 1.20135 1.05142 0.75778 0.74700 0.73488 1.93517 1.82197 1.57473 1.63445 1.93549 1.63619 1.80423 1.55397 1.30379 1.15572 1.14767 1.10519 1.19034 0.94421 0.95045 0.93719 1.21891 1.10176 0.97302 1.34216 0.92796 1.25954 1.00607 0.97852 0.94559 1.70706 1.34030 1.05978 1.43646 0.83414 0.75273 0.74247 0.76424 1.21538 1.21156 1.21171 1.21347 0.88064 0.92709 0.92703 0.89576 1.22801 0.98870 0.94118 0.87396 1.86755 1.87437 1.36685 1.25172 0.92253 0.92074 0.92131 0.90404 0.90018 0.91761 0.89837 0.85669 0.87157 0.96216 0.95736 0.91842 0.93037 0.92483 0.76996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.14 37.16 0.34 -0.67 16 2 C -0.10 -0.83 3.07 -88.79 -0.27 -1.10 16 3 H 0.09 0.63 7.85 -51.93 -0.41 0.22 16 4 C -0.12 -1.08 6.54 -24.47 -0.16 -1.24 16 5 C 0.11 1.32 7.11 -2.42 -0.02 1.30 16 6 N -1.01 -15.19 3.32 -104.29 -0.35 -15.54 16 7 S 2.61 52.25 4.87 -107.50 -0.52 51.72 16 8 O -0.98 -22.10 17.35 -57.54 -1.00 -23.10 16 9 O -0.94 -21.22 15.61 -66.19 -1.03 -22.26 16 10 C -0.58 -12.08 5.96 37.16 0.22 -11.86 16 11 C 0.02 0.45 4.29 -27.88 -0.12 0.33 16 12 C -0.60 -17.07 9.11 -34.44 -0.31 -17.39 16 13 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 14 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 15 N -0.91 -28.28 13.65 55.43 0.76 -27.53 16 16 Si 1.08 25.26 29.90 -169.99 -5.08 20.18 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.16 1.98 2.72 -66.95 -0.18 1.79 16 21 H 0.09 1.19 7.82 -51.93 -0.41 0.78 16 22 C 0.05 0.55 6.38 37.16 0.24 0.79 16 23 O -0.55 -8.18 8.95 -56.75 -0.51 -8.69 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 28 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 31 H 0.13 2.39 6.33 -51.92 -0.33 2.06 16 32 H 0.11 2.12 8.14 -51.92 -0.42 1.70 16 33 H 0.02 0.55 8.01 -51.93 -0.42 0.13 16 34 H 0.02 0.68 8.01 -51.93 -0.42 0.26 16 35 H 0.27 8.48 7.22 -40.82 -0.29 8.19 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.38 4.16 9.12 45.56 0.42 4.58 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -37.38 317.66 -8.56 -45.95 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.25 Total: 2.19 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -0.36 Total: -27.72 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.41 Total: -43.06 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -2.54 Total: -54.05 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.52 Total: 51.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.38 -8.56 -45.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248948374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.978 kcal (2) G-P(sol) polarization free energy of solvation -37.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds