Wall clock time and date at job start Mon Mar 30 2020 02:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.77606 * 2 1 4 4 C 1.55154 * 110.72039 * 236.76196 * 2 1 3 5 5 C 1.55127 * 101.48551 * 205.96722 * 4 2 1 6 6 N 1.47416 * 104.72295 * 37.29772 * 5 4 2 7 7 S 1.65606 * 125.65190 * 155.81864 * 6 5 4 8 8 O 1.42102 * 104.27169 * 330.30077 * 7 6 5 9 9 O 1.42096 * 104.27626 * 202.44155 * 7 6 5 10 10 C 1.81399 * 104.44867 * 86.36956 * 7 6 5 11 11 C 1.53002 * 109.47057 * 180.02562 * 10 7 6 12 12 C 1.50698 * 109.46973 * 180.02562 * 11 10 7 13 13 H 1.08004 * 120.00247 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99764 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00060 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99727 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47479 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.46992 * 119.99828 * 16 14 12 19 19 H 1.48500 * 109.46930 * 239.99560 * 16 14 12 20 20 C 1.47029 * 108.70263 * 335.55219 * 6 5 4 21 21 H 1.08996 * 109.88203 * 120.70511 * 20 6 5 22 22 C 1.53006 * 109.88294 * 241.87250 * 20 6 5 23 23 O 1.42896 * 109.46901 * 293.86389 * 22 20 6 24 24 H 1.08991 * 109.46842 * 296.75710 * 1 2 3 25 25 H 1.08999 * 109.47161 * 56.76327 * 1 2 3 26 26 H 1.09003 * 109.46392 * 176.76132 * 1 2 3 27 27 H 1.09001 * 111.00482 * 324.20645 * 4 2 1 28 28 H 1.09007 * 111.00520 * 88.01844 * 4 2 1 29 29 H 1.09000 * 110.49406 * 278.45082 * 5 4 2 30 30 H 1.09006 * 110.34321 * 156.06353 * 5 4 2 31 31 H 1.09002 * 109.47159 * 60.00305 * 10 7 6 32 32 H 1.09003 * 109.47447 * 300.00389 * 10 7 6 33 33 H 1.08997 * 109.46997 * 60.00582 * 11 10 7 34 34 H 1.09003 * 109.47229 * 300.00424 * 11 10 7 35 35 H 0.97002 * 120.00369 * 359.97438 * 15 14 12 36 36 H 1.08995 * 109.46992 * 53.86145 * 22 20 6 37 37 H 1.08993 * 109.47044 * 173.86105 * 22 20 6 38 38 H 0.96693 * 114.00204 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0790 -0.7954 -1.2138 5 6 3.4666 -1.2455 -0.6861 6 7 3.2446 -1.5507 0.7389 7 16 4.1635 -2.5740 1.6614 8 8 4.6510 -3.5367 0.7368 9 8 3.3036 -2.9520 2.7277 10 6 5.5193 -1.5364 2.2743 11 6 6.4496 -2.3780 3.1503 12 6 7.5757 -1.5159 3.6600 13 1 7.6233 -0.4722 3.3862 14 6 8.5457 -2.0597 4.4751 15 7 8.4879 -3.3306 4.8082 16 14 9.9419 -0.9912 5.1063 17 1 9.7791 0.3917 4.5905 18 1 9.9184 -0.9723 6.5910 19 1 11.2384 -1.5440 4.6388 20 6 2.0760 -0.7912 1.2072 21 1 1.3130 -1.4758 1.5775 22 6 2.4944 0.1757 2.3168 23 8 2.9121 -0.5674 3.4636 24 1 -0.3633 0.4626 0.9176 25 1 -0.3633 0.5633 -0.8595 26 1 -0.3632 -1.0261 -0.0581 27 1 1.4452 -1.6536 -1.4375 28 1 2.1843 -0.1519 -2.0873 29 1 4.1947 -0.4413 -0.7930 30 1 3.8033 -2.1361 -1.2169 31 1 5.1108 -0.7147 2.8624 32 1 6.0802 -1.1353 1.4301 33 1 6.8582 -3.1994 2.5619 34 1 5.8890 -2.7795 3.9946 35 1 7.7627 -3.8854 4.4807 36 1 3.3189 0.7964 1.9660 37 1 1.6495 0.8106 2.5832 38 1 3.1917 -0.0175 4.2082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248948374.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:58 Heat of formation + Delta-G solvation = -165.225201 kcal Electronic energy + Delta-G solvation = -21002.218933 eV Core-core repulsion = 17777.046746 eV Total energy + Delta-G solvation = -3225.172187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23607 -38.23305 -37.21176 -36.98756 -36.27632 -33.52852 -32.95605 -31.26761 -28.19738 -27.08413 -24.84174 -24.01178 -22.75991 -21.32153 -19.84346 -19.25663 -18.42647 -18.17054 -17.66914 -17.22736 -16.49110 -15.69839 -15.56552 -15.34573 -15.05131 -14.88990 -14.77637 -14.43315 -14.00570 -13.84279 -13.42776 -13.24922 -13.13132 -12.98894 -12.84067 -12.65632 -12.49292 -12.33837 -12.28959 -11.91713 -11.89159 -11.85222 -11.62593 -11.53258 -10.93800 -10.77834 -10.64180 -9.93297 -8.76525 -6.50349 -0.71282 1.51922 1.62565 1.73197 1.78145 2.53810 2.82947 3.06016 3.08723 3.23827 3.61740 3.67584 3.90574 4.02843 4.06730 4.19944 4.29025 4.43615 4.49161 4.53847 4.58265 4.61360 4.75255 4.83934 5.00089 5.01901 5.05183 5.09489 5.14311 5.19802 5.29503 5.49321 5.57195 5.80063 6.06299 6.42520 6.87866 7.33402 8.62743 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029049 B = 0.005086 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.673519 B = 5504.339340 C = 5744.127113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.111 0.889 4 C -0.115 4.115 5 C 0.095 3.905 6 N -1.008 6.008 7 S 2.629 3.371 8 O -1.010 7.010 9 O -0.972 6.972 10 C -0.575 4.575 11 C 0.010 3.990 12 C -0.609 4.609 13 H 0.067 0.933 14 C -0.043 4.043 15 N -0.936 5.936 16 Si 1.130 2.870 17 H -0.261 1.261 18 H -0.277 1.277 19 H -0.279 1.279 20 C 0.145 3.855 21 H 0.065 0.935 22 C 0.041 3.959 23 O -0.590 6.590 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.128 0.872 33 H -0.006 1.006 34 H 0.001 0.999 35 H 0.253 0.747 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 14.106 -11.889 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 H 0.129 0.871 4 C -0.154 4.154 5 C -0.029 4.029 6 N -0.847 5.847 7 S 2.728 3.272 8 O -1.000 7.000 9 O -0.962 6.962 10 C -0.707 4.707 11 C -0.029 4.029 12 C -0.647 4.647 13 H 0.085 0.915 14 C -0.240 4.240 15 N -0.573 5.573 16 Si 0.949 3.051 17 H -0.185 1.185 18 H -0.203 1.203 19 H -0.204 1.204 20 C 0.039 3.961 21 H 0.083 0.917 22 C -0.037 4.037 23 O -0.399 6.399 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.013 0.987 34 H 0.019 0.981 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -14.660 12.585 -11.182 22.323 hybrid contribution -0.807 0.220 -0.252 0.874 sum -15.468 12.804 -11.433 23.107 Atomic orbital electron populations 1.21794 0.92512 1.02267 1.03345 1.22249 0.97108 0.99714 0.91363 0.87108 1.22917 0.93598 1.00632 0.98264 1.22456 1.00248 1.01292 0.78919 1.58555 1.41848 1.63171 1.21116 1.04119 0.75367 0.74715 0.72963 1.93467 1.82984 1.59423 1.64136 1.93499 1.64199 1.81455 1.57080 1.30290 1.15355 1.14621 1.10423 1.18932 0.95163 0.95142 0.93663 1.22328 1.10510 0.98074 1.33817 0.91494 1.27715 1.03544 0.98142 0.94573 1.70859 1.34000 1.07240 1.45229 0.82802 0.72098 0.73757 0.76404 1.18548 1.20260 1.20442 1.21752 0.86506 0.92862 0.94972 0.91693 1.23026 1.00612 0.93944 0.86158 1.86720 1.87815 1.38700 1.26647 0.91699 0.89943 0.93234 0.90834 0.86622 0.89515 0.91269 0.83715 0.85363 0.98738 0.98115 0.93739 0.91615 0.89299 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.14 71.98 0.66 -0.87 16 2 C -0.08 -1.15 3.07 -9.61 -0.03 -1.18 16 3 H 0.11 1.04 7.85 -2.39 -0.02 1.02 16 4 C -0.12 -1.63 6.54 32.06 0.21 -1.42 16 5 C 0.10 2.07 7.11 86.93 0.62 2.69 16 6 N -1.01 -29.34 3.32 -483.87 -1.61 -30.95 16 7 S 2.63 107.61 4.87 -56.49 -0.28 107.33 16 8 O -1.01 -47.33 17.35 -127.65 -2.21 -49.54 16 9 O -0.97 -45.54 15.61 -119.37 -1.86 -47.40 16 10 C -0.58 -24.04 5.96 71.98 0.43 -23.61 16 11 C 0.01 0.54 4.29 29.85 0.13 0.67 16 12 C -0.61 -35.01 9.11 25.60 0.23 -34.78 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 14 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 15 N -0.94 -59.97 13.65 21.45 0.29 -59.68 16 16 Si 1.13 49.90 29.90 68.60 2.05 51.95 16 17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.14 3.36 2.72 45.34 0.12 3.48 16 21 H 0.06 1.77 7.82 -2.39 -0.02 1.75 16 22 C 0.04 0.85 6.38 71.98 0.46 1.31 16 23 O -0.59 -17.04 8.95 -128.40 -1.15 -18.19 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 27 H 0.07 1.12 8.02 -2.39 -0.02 1.10 16 28 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.70 7.69 -2.38 -0.02 1.68 16 31 H 0.14 5.41 6.33 -2.39 -0.02 5.40 16 32 H 0.13 4.82 8.14 -2.39 -0.02 4.80 16 33 H -0.01 -0.33 8.01 -2.39 -0.02 -0.35 16 34 H 0.00 0.04 8.01 -2.39 -0.02 0.02 16 35 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.39 8.34 9.12 -74.06 -0.68 7.67 16 Total: -1.00 -83.84 317.66 -1.00 -84.85 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.47 Total: 17.38 kcal Atomic # 6 Polarization: -59.04 SS G_CDS: 3.29 Total: -55.75 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -1.31 Total: -90.62 kcal Atomic # 8 Polarization: -109.91 SS G_CDS: -5.23 Total: -115.14 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.05 Total: 51.95 kcal Atomic # 16 Polarization: 107.61 SS G_CDS: -0.28 Total: 107.33 kcal Total: -83.84 -1.00 -84.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248948374.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.380 kcal (2) G-P(sol) polarization free energy of solvation -83.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds