Wall clock time and date at job start Mon Mar 30 2020 01:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47597 * 2 1 4 4 N 1.46502 * 109.47261 * 120.00430 * 2 1 3 5 5 C 1.34780 * 119.99622 * 299.99964 * 4 2 1 6 6 O 1.21583 * 119.99901 * 359.97438 * 5 4 2 7 7 C 1.47644 * 120.00017 * 179.97438 * 5 4 2 8 8 C 1.40010 * 119.89525 * 179.97438 * 7 5 4 9 9 C 1.36316 * 120.10513 * 180.25638 * 8 7 5 10 10 C 1.40896 * 119.89085 * 359.52186 * 9 8 7 11 11 C 1.41105 * 120.10198 * 180.23462 * 10 9 8 12 12 H 1.08001 * 120.00056 * 204.79556 * 11 10 9 13 13 C 1.40223 * 120.00499 * 24.78776 * 11 10 9 14 14 N 1.30654 * 119.99604 * 17.72846 * 13 11 10 15 15 Si 1.86796 * 120.00554 * 197.72576 * 13 11 10 16 16 H 1.48506 * 109.46954 * 60.00050 * 15 13 11 17 17 H 1.48495 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47164 * 300.00408 * 15 13 11 19 19 C 1.40884 * 119.79293 * 0.49660 * 10 9 8 20 20 C 1.36322 * 119.89276 * 359.73284 * 19 10 9 21 21 C 1.50706 * 109.46829 * 239.99914 * 2 1 3 22 22 O 1.20823 * 120.00164 * 25.00581 * 21 2 1 23 23 O 1.34233 * 119.99686 * 205.00277 * 21 2 1 24 24 H 1.09004 * 109.46917 * 300.00351 * 1 2 3 25 25 H 1.09003 * 109.47171 * 59.99807 * 1 2 3 26 26 H 1.08999 * 109.47668 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47823 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47683 * 300.00304 * 3 2 1 29 29 H 1.09004 * 109.47273 * 59.99868 * 3 2 1 30 30 H 0.96993 * 120.00476 * 119.99462 * 4 2 1 31 31 H 1.07999 * 119.94817 * 359.97438 * 8 7 5 32 32 H 1.08000 * 120.05651 * 179.71795 * 9 8 7 33 33 H 0.97000 * 119.99671 * 179.97438 * 14 13 11 34 34 H 1.07998 * 120.05717 * 179.71507 * 19 10 9 35 35 H 1.07997 * 119.94784 * 179.97438 * 20 19 10 36 36 H 0.96705 * 116.99649 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6927 -0.2303 2.4203 6 8 0.9941 0.7585 2.5318 7 6 2.1844 -0.9266 3.6258 8 6 1.8452 -0.4461 4.8963 9 6 2.3011 -1.0826 6.0122 10 6 3.1065 -2.2317 5.8855 11 6 3.5768 -2.8970 7.0376 12 1 4.4749 -3.4947 6.9872 13 6 2.8782 -2.7819 8.2479 14 7 1.6393 -2.3668 8.2502 15 14 3.7186 -3.2222 9.8570 16 1 4.9097 -2.3558 10.0466 17 1 2.7719 -3.0163 10.9824 18 1 4.1421 -4.6451 9.8211 19 6 3.4454 -2.7112 4.6048 20 6 2.9887 -2.0652 3.4946 21 6 2.0322 -0.7105 -1.2305 22 8 1.3395 -0.7703 -2.2187 23 8 3.2492 -1.2768 -1.2287 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.5759 -1.4793 1.1071 31 1 1.2252 0.4329 4.9925 32 1 2.0428 -0.7086 6.9919 33 1 1.1560 -2.2876 9.0874 34 1 4.0663 -3.5889 4.5027 35 1 3.2483 -2.4317 2.5125 36 1 3.5280 -1.7208 -2.0413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000262196003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:43 Heat of formation + Delta-G solvation = -117.053303 kcal Electronic energy + Delta-G solvation = -21036.079559 eV Core-core repulsion = 17677.552311 eV Total energy + Delta-G solvation = -3358.527248 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.85458 -39.18396 -37.32403 -36.40173 -35.24421 -33.93471 -31.60683 -29.95137 -29.29752 -27.29871 -25.96335 -24.88713 -22.19902 -21.11538 -20.23408 -19.38492 -18.38685 -17.72352 -17.49902 -16.25393 -15.78475 -15.32005 -14.91227 -14.31070 -14.08041 -13.98418 -13.69524 -13.22557 -13.06221 -12.81601 -12.33314 -12.16090 -12.13823 -11.95699 -11.78140 -11.69915 -11.44453 -11.28907 -11.23201 -10.98299 -10.69213 -10.64508 -10.08410 -9.55983 -9.35726 -8.92768 -8.81829 -7.72679 -7.60204 -7.04718 -4.63214 1.92505 2.19076 2.77323 2.90228 2.93830 2.96794 3.01658 3.52863 3.72038 3.80513 4.51922 4.69773 4.92342 5.14363 5.54778 5.57222 5.67102 5.77800 5.88557 5.95803 6.01036 6.19117 6.25794 6.30059 6.37865 6.73338 6.77897 6.83245 7.03186 7.07099 7.40878 7.58673 7.66818 7.73263 7.84428 8.02447 8.15590 8.40179 8.60220 8.72653 8.96664 9.87048 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003717 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.678654 B = 7530.451368 C = 7948.905359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.195 3.805 3 C -0.163 4.163 4 N -0.734 5.734 5 C 0.579 3.421 6 O -0.566 6.566 7 C -0.285 4.285 8 C -0.034 4.034 9 C -0.183 4.183 10 C 0.129 3.871 11 C -0.442 4.442 12 H 0.085 0.915 13 C 0.074 3.926 14 N -0.768 5.768 15 Si 0.914 3.086 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.235 4.235 20 C -0.048 4.048 21 C 0.484 3.516 22 O -0.508 6.508 23 O -0.510 6.510 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.404 0.596 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.288 0.712 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.374 1.258 -10.055 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.107 3.893 3 C -0.221 4.221 4 N -0.391 5.391 5 C 0.375 3.625 6 O -0.447 6.447 7 C -0.290 4.290 8 C -0.053 4.053 9 C -0.202 4.202 10 C 0.126 3.874 11 C -0.470 4.470 12 H 0.103 0.897 13 C -0.148 4.148 14 N -0.391 5.391 15 Si 0.738 3.262 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.254 4.254 20 C -0.067 4.067 21 C 0.325 3.675 22 O -0.394 6.394 23 O -0.322 6.322 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.240 0.760 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.108 0.892 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.343 2.173 -9.754 10.083 hybrid contribution 0.777 -1.066 0.007 1.319 sum 2.120 1.107 -9.747 10.036 Atomic orbital electron populations 1.22189 0.91080 1.03396 1.04661 1.20078 0.95806 0.92948 0.80435 1.22261 1.01769 0.93185 1.04873 1.46002 1.55920 1.32900 1.04269 1.18554 0.78379 0.83130 0.82459 1.90577 1.39934 1.27445 1.86789 1.18839 1.14605 1.03847 0.91685 1.20464 0.96080 0.97404 0.91369 1.21013 1.04584 0.97144 0.97499 1.17787 0.88180 0.89554 0.91917 1.19828 1.08994 1.25149 0.92993 0.89741 1.26111 0.94160 0.92829 1.01688 1.69742 1.08384 1.30792 1.30151 0.86254 0.80223 0.80258 0.79503 1.18438 1.20008 1.18682 1.20668 1.09579 1.02601 0.92601 1.20379 0.95602 0.94010 0.96706 1.23651 0.78636 0.75265 0.89923 1.90716 1.57167 1.56152 1.35391 1.84572 1.34802 1.67052 1.45725 0.88349 0.91010 0.92181 0.91697 0.91568 0.87978 0.75964 0.88084 0.86161 0.90054 0.88478 0.89240 0.73101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 7.93 37.16 0.29 -1.95 16 2 C 0.20 2.79 1.01 -132.97 -0.13 2.66 16 3 C -0.16 -2.19 8.38 37.15 0.31 -1.88 16 4 N -0.73 -11.77 4.99 -49.68 -0.25 -12.02 16 5 C 0.58 11.50 7.18 -12.42 -0.09 11.41 16 6 O -0.57 -12.17 12.53 5.29 0.07 -12.10 16 7 C -0.29 -6.26 5.89 -104.73 -0.62 -6.88 16 8 C -0.03 -0.80 9.52 -39.61 -0.38 -1.18 16 9 C -0.18 -4.56 8.63 -39.27 -0.34 -4.90 16 10 C 0.13 3.21 5.57 -106.80 -0.60 2.62 16 11 C -0.44 -10.79 9.04 -37.75 -0.34 -11.13 16 12 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 13 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 14 N -0.77 -18.45 10.95 55.56 0.61 -17.84 16 15 Si 0.91 17.08 29.60 -169.99 -5.03 12.05 16 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 17 H -0.28 -5.03 7.11 56.52 0.40 -4.62 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 19 C -0.24 -5.31 9.73 -39.27 -0.38 -5.69 16 20 C -0.05 -0.99 9.47 -39.61 -0.38 -1.37 16 21 C 0.48 6.24 7.11 36.01 0.26 6.49 16 22 O -0.51 -7.47 16.85 -18.75 -0.32 -7.79 16 23 O -0.51 -5.09 12.64 -39.27 -0.50 -5.58 16 24 H 0.10 1.60 6.16 -51.93 -0.32 1.28 16 25 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.59 6.16 -51.93 -0.32 1.27 16 30 H 0.40 5.92 5.91 -40.82 -0.24 5.68 16 31 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 32 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 33 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 34 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.09 1.53 6.37 -52.49 -0.33 1.20 16 36 H 0.41 2.13 9.10 45.56 0.41 2.54 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -28.49 307.56 -6.43 -34.92 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -3.17 Total: 13.90 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.48 Total: -10.18 kcal Atomic # 7 Polarization: -30.22 SS G_CDS: 0.36 Total: -29.86 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.75 Total: -25.47 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.49 -6.43 -34.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262196003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.133 kcal (2) G-P(sol) polarization free energy of solvation -28.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds