Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47597 * 2 1 4 4 N 1.46502 * 109.47261 * 120.00430 * 2 1 3 5 5 C 1.34780 * 119.99622 * 299.99964 * 4 2 1 6 6 O 1.21583 * 119.99901 * 359.97438 * 5 4 2 7 7 C 1.47644 * 120.00017 * 179.97438 * 5 4 2 8 8 C 1.40010 * 119.89525 * 179.97438 * 7 5 4 9 9 C 1.36316 * 120.10513 * 180.25638 * 8 7 5 10 10 C 1.40896 * 119.89085 * 359.52186 * 9 8 7 11 11 C 1.41105 * 120.10198 * 180.23462 * 10 9 8 12 12 H 1.08001 * 120.00056 * 204.79556 * 11 10 9 13 13 C 1.40223 * 120.00499 * 24.78776 * 11 10 9 14 14 N 1.30654 * 119.99604 * 17.72846 * 13 11 10 15 15 Si 1.86796 * 120.00554 * 197.72576 * 13 11 10 16 16 H 1.48506 * 109.46954 * 60.00050 * 15 13 11 17 17 H 1.48495 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47164 * 300.00408 * 15 13 11 19 19 C 1.40884 * 119.79293 * 0.49660 * 10 9 8 20 20 C 1.36322 * 119.89276 * 359.73284 * 19 10 9 21 21 C 1.50706 * 109.46829 * 239.99914 * 2 1 3 22 22 O 1.20823 * 120.00164 * 25.00581 * 21 2 1 23 23 O 1.34233 * 119.99686 * 205.00277 * 21 2 1 24 24 H 1.09004 * 109.46917 * 300.00351 * 1 2 3 25 25 H 1.09003 * 109.47171 * 59.99807 * 1 2 3 26 26 H 1.08999 * 109.47668 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47823 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47683 * 300.00304 * 3 2 1 29 29 H 1.09004 * 109.47273 * 59.99868 * 3 2 1 30 30 H 0.96993 * 120.00476 * 119.99462 * 4 2 1 31 31 H 1.07999 * 119.94817 * 359.97438 * 8 7 5 32 32 H 1.08000 * 120.05651 * 179.71795 * 9 8 7 33 33 H 0.97000 * 119.99671 * 179.97438 * 14 13 11 34 34 H 1.07998 * 120.05717 * 179.71507 * 19 10 9 35 35 H 1.07997 * 119.94784 * 179.97438 * 20 19 10 36 36 H 0.96705 * 116.99649 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6927 -0.2303 2.4203 6 8 0.9941 0.7585 2.5318 7 6 2.1844 -0.9266 3.6258 8 6 1.8452 -0.4461 4.8963 9 6 2.3011 -1.0826 6.0122 10 6 3.1065 -2.2317 5.8855 11 6 3.5768 -2.8970 7.0376 12 1 4.4749 -3.4947 6.9872 13 6 2.8782 -2.7819 8.2479 14 7 1.6393 -2.3668 8.2502 15 14 3.7186 -3.2222 9.8570 16 1 4.9097 -2.3558 10.0466 17 1 2.7719 -3.0163 10.9824 18 1 4.1421 -4.6451 9.8211 19 6 3.4454 -2.7112 4.6048 20 6 2.9887 -2.0652 3.4946 21 6 2.0322 -0.7105 -1.2305 22 8 1.3395 -0.7703 -2.2187 23 8 3.2492 -1.2768 -1.2287 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 2.5759 -1.4793 1.1071 31 1 1.2252 0.4329 4.9925 32 1 2.0428 -0.7086 6.9919 33 1 1.1560 -2.2876 9.0874 34 1 4.0663 -3.5889 4.5027 35 1 3.2483 -2.4317 2.5125 36 1 3.5280 -1.7208 -2.0413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000262196003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = -135.140561 kcal Electronic energy + Delta-G solvation = -21036.863882 eV Core-core repulsion = 17677.552311 eV Total energy + Delta-G solvation = -3359.311571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.96393 -40.62410 -39.00999 -37.32914 -36.61406 -35.67919 -33.06663 -31.71685 -30.98869 -28.41305 -27.67418 -26.02613 -23.82576 -22.82631 -21.59703 -20.77979 -19.59736 -19.23468 -18.90540 -17.63590 -17.04230 -16.76301 -16.29920 -15.76212 -15.71295 -15.38525 -15.06883 -14.63925 -14.44897 -14.27074 -13.98396 -13.68282 -13.39577 -13.25008 -13.09643 -13.01372 -12.79497 -12.66060 -12.60058 -12.42233 -12.30201 -11.79713 -11.74304 -11.32409 -11.09600 -10.51160 -10.21100 -9.53805 -9.40162 -8.77403 -6.46610 0.46269 0.91123 1.18516 1.39227 1.45424 1.53057 1.82894 2.11957 2.18326 2.21329 2.80482 3.60706 3.70422 3.81661 4.18413 4.23993 4.36117 4.44595 4.60539 4.63884 4.69954 4.73699 4.99881 5.03523 5.10785 5.19626 5.23656 5.28661 5.41084 5.48002 5.61482 5.81274 5.97248 6.03916 6.23165 6.58262 6.65269 6.78945 6.85889 6.91754 7.42309 8.17376 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039501 B = 0.003717 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.678654 B = 7530.451368 C = 7948.905359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.187 3.813 3 C -0.159 4.159 4 N -0.718 5.718 5 C 0.582 3.418 6 O -0.585 6.585 7 C -0.292 4.292 8 C -0.046 4.046 9 C -0.204 4.204 10 C 0.101 3.899 11 C -0.474 4.474 12 H 0.091 0.909 13 C 0.035 3.965 14 N -0.803 5.803 15 Si 0.987 3.013 16 H -0.258 1.258 17 H -0.268 1.268 18 H -0.254 1.254 19 C -0.247 4.247 20 C -0.038 4.038 21 C 0.498 3.502 22 O -0.526 6.526 23 O -0.502 6.502 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.412 0.588 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.295 0.705 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 0.386 -11.504 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.100 3.900 3 C -0.217 4.217 4 N -0.374 5.374 5 C 0.376 3.624 6 O -0.468 6.468 7 C -0.297 4.297 8 C -0.066 4.066 9 C -0.223 4.223 10 C 0.098 3.902 11 C -0.501 4.501 12 H 0.109 0.891 13 C -0.184 4.184 14 N -0.426 5.426 15 Si 0.807 3.193 16 H -0.182 1.182 17 H -0.193 1.193 18 H -0.178 1.178 19 C -0.266 4.266 20 C -0.057 4.057 21 C 0.339 3.661 22 O -0.414 6.414 23 O -0.316 6.316 24 H 0.095 0.905 25 H 0.105 0.895 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.251 0.749 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.150 0.850 36 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 2.579 1.277 -11.253 11.615 hybrid contribution 0.388 -0.763 0.305 0.909 sum 2.967 0.514 -10.948 11.355 Atomic orbital electron populations 1.22119 0.91379 1.03217 1.04322 1.20205 0.95824 0.93652 0.80340 1.22204 1.02243 0.92521 1.04748 1.45770 1.55077 1.32819 1.03714 1.18245 0.78272 0.82761 0.83118 1.90583 1.40692 1.28218 1.87273 1.19140 1.14313 1.04275 0.91928 1.20548 0.96313 0.97432 0.92262 1.20942 1.06097 0.98123 0.97157 1.18146 0.88760 0.89837 0.93477 1.20139 1.09758 1.26217 0.93980 0.89058 1.26986 0.94393 0.92193 1.04793 1.69797 1.09768 1.31662 1.31414 0.85159 0.78971 0.80166 0.74994 1.18232 1.19278 1.17799 1.20932 1.10000 1.03379 0.92291 1.20706 0.93977 0.92819 0.98177 1.23060 0.79225 0.75024 0.88745 1.90728 1.57957 1.56957 1.35771 1.84501 1.33035 1.66624 1.47425 0.90505 0.89499 0.92276 0.90858 0.89459 0.90347 0.74933 0.88620 0.87881 0.89387 0.86768 0.85042 0.70270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 7.93 71.98 0.57 -3.62 16 2 C 0.19 4.93 1.01 2.85 0.00 4.93 16 3 C -0.16 -3.97 8.38 71.98 0.60 -3.37 16 4 N -0.72 -21.41 4.99 -429.35 -2.14 -23.55 16 5 C 0.58 22.60 7.18 86.73 0.62 23.22 16 6 O -0.58 -25.19 12.53 -3.98 -0.05 -25.24 16 7 C -0.29 -12.70 5.89 -19.93 -0.12 -12.82 16 8 C -0.05 -2.25 9.52 22.25 0.21 -2.04 16 9 C -0.20 -10.57 8.63 22.47 0.19 -10.38 16 10 C 0.10 5.13 5.57 -21.28 -0.12 5.01 16 11 C -0.47 -23.48 9.04 23.46 0.21 -23.27 16 12 H 0.09 4.22 7.91 -2.91 -0.02 4.20 16 13 C 0.04 1.64 5.14 85.35 0.44 2.08 16 14 N -0.80 -39.67 10.95 21.87 0.24 -39.43 16 15 Si 0.99 34.90 29.60 68.60 2.03 36.93 16 16 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 17 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 18 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 19 C -0.25 -10.98 9.73 22.47 0.22 -10.76 16 20 C -0.04 -1.51 9.47 22.25 0.21 -1.30 16 21 C 0.50 11.22 7.11 71.24 0.51 11.73 16 22 O -0.53 -13.91 16.85 21.97 0.37 -13.54 16 23 O -0.50 -7.99 12.64 -51.45 -0.65 -8.64 16 24 H 0.08 2.47 6.16 -2.39 -0.01 2.45 16 25 H 0.09 2.10 7.87 -2.39 -0.02 2.08 16 26 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.38 6.16 -2.39 -0.01 2.36 16 30 H 0.41 10.72 5.91 -92.71 -0.55 10.17 16 31 H 0.10 4.63 7.63 -2.91 -0.02 4.61 16 32 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 33 H 0.30 13.12 8.29 -92.71 -0.77 12.35 16 34 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.13 4.02 6.37 -2.91 -0.02 4.00 16 36 H 0.43 2.63 9.10 -74.05 -0.67 1.96 16 Total: -1.00 -62.47 307.56 3.27 -59.19 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.08 Total: 34.83 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 3.56 Total: -20.57 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -1.90 Total: -62.97 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -0.33 Total: -47.41 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -62.47 3.27 -59.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000262196003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.949 kcal (2) G-P(sol) polarization free energy of solvation -62.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds