Wall clock time and date at job start Mon Mar 30 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46985 * 2 1 4 4 N 1.46504 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.35793 * 119.99845 * 267.59694 * 4 3 2 6 6 H 1.08004 * 120.00020 * 143.30491 * 5 4 3 7 7 C 1.39883 * 120.00512 * 323.30832 * 5 4 3 8 8 N 1.30834 * 120.00320 * 156.15435 * 7 5 4 9 9 Si 1.86802 * 119.99720 * 336.15473 * 7 5 4 10 10 H 1.48501 * 109.47092 * 94.75985 * 9 7 5 11 11 H 1.48498 * 109.47038 * 214.76292 * 9 7 5 12 12 H 1.48503 * 109.46990 * 334.76206 * 9 7 5 13 13 C 1.34775 * 120.00223 * 87.60247 * 4 3 2 14 14 O 1.21561 * 120.00109 * 184.29935 * 13 4 3 15 15 C 1.48437 * 119.99868 * 4.29144 * 13 4 3 16 16 O 1.21561 * 120.00275 * 274.86262 * 15 13 4 17 17 C 1.47196 * 119.99761 * 94.86385 * 15 13 4 18 18 C 1.40057 * 120.10940 * 174.78320 * 17 15 13 19 19 C 1.37101 * 119.88321 * 180.02562 * 18 17 15 20 20 C 1.39123 * 120.11555 * 0.02562 * 19 18 17 21 21 O 1.35657 * 119.89203 * 179.97438 * 20 19 18 22 22 C 1.39126 * 120.21908 * 0.24822 * 20 19 18 23 23 C 1.37103 * 120.11438 * 359.45056 * 22 20 19 24 24 H 1.08994 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46906 * 300.00024 * 1 2 3 26 26 H 1.09002 * 109.47119 * 59.99632 * 1 2 3 27 27 H 1.09001 * 109.47216 * 240.00407 * 2 1 3 28 28 H 1.08999 * 109.47437 * 119.99952 * 2 1 3 29 29 H 1.08994 * 109.47417 * 60.00390 * 3 2 1 30 30 H 1.09002 * 109.47492 * 300.00139 * 3 2 1 31 31 H 0.96997 * 119.99617 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.05508 * 0.02562 * 18 17 15 33 33 H 1.08006 * 119.93944 * 180.02562 * 19 18 17 34 34 H 0.96699 * 114.00444 * 89.99690 * 21 20 19 35 35 H 1.07999 * 119.94069 * 179.70544 * 22 20 19 36 36 H 1.08002 * 120.05658 * 180.25057 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1844 1.4917 1.1741 6 1 5.1040 0.9371 1.2897 7 6 3.6934 2.2604 2.2346 8 7 4.0356 1.9732 3.4642 9 14 2.5490 3.6973 1.8950 10 1 1.1393 3.2491 2.0263 11 1 2.8159 4.7841 2.8711 12 1 2.7820 4.2008 0.5175 13 6 4.1784 1.3939 -1.1670 14 8 5.3915 1.3150 -1.1657 15 6 3.4389 1.4365 -2.4533 16 8 2.9909 0.4124 -2.9311 17 6 3.2479 2.7188 -3.1503 18 6 2.6473 2.7484 -4.4152 19 6 2.4722 3.9453 -5.0605 20 6 2.8905 5.1291 -4.4612 21 8 2.7155 6.3108 -5.1040 22 6 3.4928 5.1045 -3.2074 23 6 3.6669 3.9133 -2.5511 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.6948 2.5061 4.1995 32 1 2.3226 1.8298 -4.8814 33 1 2.0087 3.9692 -6.0358 34 1 1.8716 6.7420 -4.9117 35 1 3.8201 6.0257 -2.7484 36 1 4.1309 3.8957 -1.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280954344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:50 Heat of formation + Delta-G solvation = -73.144247 kcal Electronic energy + Delta-G solvation = -21792.623986 eV Core-core repulsion = 18436.000777 eV Total energy + Delta-G solvation = -3356.623209 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38959 -39.28689 -37.73038 -36.53397 -35.65402 -32.98992 -31.79503 -31.26940 -30.32860 -26.57814 -25.92592 -24.07191 -22.84949 -21.80874 -21.39273 -18.98068 -18.62276 -17.23765 -17.05239 -16.42769 -15.97987 -15.55847 -15.29603 -14.67543 -14.45032 -14.12683 -13.73713 -13.62733 -13.45622 -13.25301 -12.75111 -12.67491 -12.33745 -12.13844 -12.10252 -11.94792 -11.70206 -11.13992 -10.96351 -10.65421 -10.60319 -10.55677 -10.14347 -9.94555 -9.21996 -9.17265 -8.75391 -8.48463 -7.98950 -6.59920 -4.09707 0.52245 1.29553 2.33546 2.88722 3.06791 3.10696 3.33560 3.60477 3.84191 3.99294 4.01338 4.54894 4.75835 4.83151 4.98129 5.22249 5.29837 5.35530 5.41905 5.48334 5.63616 5.70531 5.79724 5.92456 6.02647 6.14553 6.15759 6.24453 6.31736 6.33770 6.57879 6.61380 6.76910 7.30278 7.40921 7.55295 8.07148 8.27629 8.72355 9.10968 9.50836 10.50936 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.006894 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.063790 B = 4060.622294 C = 4567.824388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.086 3.914 4 N -0.432 5.432 5 C -0.330 4.330 6 H 0.110 0.890 7 C 0.071 3.929 8 N -0.841 5.841 9 Si 0.865 3.135 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.259 1.259 13 C 0.425 3.575 14 O -0.544 6.544 15 C 0.399 3.601 16 O -0.439 6.439 17 C -0.169 4.169 18 C -0.043 4.043 19 C -0.163 4.163 20 C 0.135 3.865 21 O -0.499 6.499 22 C -0.158 4.158 23 C -0.040 4.040 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.278 0.722 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.393 0.607 35 H 0.136 0.864 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 6.523 -11.180 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.037 4.037 4 N -0.152 5.152 5 C -0.457 4.457 6 H 0.128 0.872 7 C -0.138 4.138 8 N -0.475 5.475 9 Si 0.692 3.308 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.183 1.183 13 C 0.212 3.788 14 O -0.426 6.426 15 C 0.272 3.728 16 O -0.312 6.312 17 C -0.171 4.171 18 C -0.061 4.061 19 C -0.181 4.181 20 C 0.090 3.910 21 O -0.310 6.310 22 C -0.176 4.176 23 C -0.058 4.058 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.250 0.750 35 H 0.154 0.846 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.636 5.851 -11.425 15.471 hybrid contribution -1.070 1.020 0.247 1.499 sum -9.707 6.871 -11.178 16.321 Atomic orbital electron populations 1.21705 0.95947 1.01492 1.01352 1.21918 0.95218 0.97059 1.03662 1.22021 0.82512 0.97659 1.01524 1.43387 1.04046 1.62582 1.05196 1.19016 1.10342 1.29772 0.86575 0.87204 1.25462 0.96822 0.97024 0.94535 1.69508 1.42244 1.37013 0.98717 0.87151 0.80518 0.83428 0.79736 1.19761 1.20872 1.18285 1.20049 0.88487 0.85625 0.84616 1.90723 1.12486 1.53422 1.85955 1.22719 0.75045 0.87865 0.87144 1.90564 1.38714 1.35792 1.66132 1.20495 1.05022 0.94620 0.96933 1.21149 0.93925 0.98332 0.92692 1.21219 1.03658 0.91870 1.01394 1.18824 0.96332 0.85452 0.90366 1.84729 1.42903 1.33607 1.69719 1.21293 1.02686 0.99156 0.94489 1.21451 0.93623 0.90944 0.99816 0.92616 0.92802 0.93139 0.91335 0.90401 0.90251 0.92462 0.91071 0.84294 0.84777 0.74976 0.84615 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.14 -2.59 6.25 -26.73 -0.17 -2.75 16 3 C 0.09 1.76 3.98 -4.04 -0.02 1.74 16 4 N -0.43 -10.38 2.16 -115.71 -0.25 -10.63 16 5 C -0.33 -8.99 9.37 -15.18 -0.14 -9.13 16 6 H 0.11 3.39 7.84 -52.48 -0.41 2.97 16 7 C 0.07 1.86 5.27 -17.36 -0.09 1.76 16 8 N -0.84 -22.96 13.93 55.54 0.77 -22.18 16 9 Si 0.87 18.97 25.15 -169.99 -4.28 14.69 16 10 H -0.27 -5.57 6.63 56.52 0.37 -5.19 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 13 C 0.43 10.26 5.98 -12.06 -0.07 10.19 16 14 O -0.54 -14.97 16.93 5.31 0.09 -14.88 16 15 C 0.40 8.14 5.02 -31.74 -0.16 7.98 16 16 O -0.44 -9.09 16.18 5.31 0.09 -9.00 16 17 C -0.17 -2.89 5.87 -104.90 -0.62 -3.51 16 18 C -0.04 -0.59 9.57 -39.31 -0.38 -0.97 16 19 C -0.16 -1.92 9.95 -39.67 -0.39 -2.31 16 20 C 0.13 1.63 6.72 -38.92 -0.26 1.37 16 21 O -0.50 -4.95 13.48 -18.67 -0.25 -5.21 16 22 C -0.16 -2.14 9.95 -39.66 -0.39 -2.53 16 23 C -0.04 -0.66 9.43 -39.31 -0.37 -1.03 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.31 7.19 -51.93 -0.37 0.93 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.08 1.66 3.36 -51.93 -0.17 1.48 16 30 H 0.06 1.05 6.88 -51.93 -0.36 0.69 16 31 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 32 H 0.14 1.77 7.66 -52.49 -0.40 1.36 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.39 1.89 9.06 45.56 0.41 2.30 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.14 2.62 7.15 -52.49 -0.38 2.24 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -31.71 312.07 -5.20 -36.90 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.38 Total: 6.59 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.69 Total: -0.98 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.52 Total: -32.81 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.08 Total: -29.09 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.28 Total: 14.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.71 -5.20 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280954344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.241 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds