Wall clock time and date at job start Mon Mar 30 2020 01:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46985 * 2 1 4 4 N 1.46504 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.35793 * 119.99845 * 267.59694 * 4 3 2 6 6 H 1.08004 * 120.00020 * 143.30491 * 5 4 3 7 7 C 1.39883 * 120.00512 * 323.30832 * 5 4 3 8 8 N 1.30834 * 120.00320 * 156.15435 * 7 5 4 9 9 Si 1.86802 * 119.99720 * 336.15473 * 7 5 4 10 10 H 1.48501 * 109.47092 * 94.75985 * 9 7 5 11 11 H 1.48498 * 109.47038 * 214.76292 * 9 7 5 12 12 H 1.48503 * 109.46990 * 334.76206 * 9 7 5 13 13 C 1.34775 * 120.00223 * 87.60247 * 4 3 2 14 14 O 1.21561 * 120.00109 * 184.29935 * 13 4 3 15 15 C 1.48437 * 119.99868 * 4.29144 * 13 4 3 16 16 O 1.21561 * 120.00275 * 274.86262 * 15 13 4 17 17 C 1.47196 * 119.99761 * 94.86385 * 15 13 4 18 18 C 1.40057 * 120.10940 * 174.78320 * 17 15 13 19 19 C 1.37101 * 119.88321 * 180.02562 * 18 17 15 20 20 C 1.39123 * 120.11555 * 0.02562 * 19 18 17 21 21 O 1.35657 * 119.89203 * 179.97438 * 20 19 18 22 22 C 1.39126 * 120.21908 * 0.24822 * 20 19 18 23 23 C 1.37103 * 120.11438 * 359.45056 * 22 20 19 24 24 H 1.08994 * 109.46808 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46906 * 300.00024 * 1 2 3 26 26 H 1.09002 * 109.47119 * 59.99632 * 1 2 3 27 27 H 1.09001 * 109.47216 * 240.00407 * 2 1 3 28 28 H 1.08999 * 109.47437 * 119.99952 * 2 1 3 29 29 H 1.08994 * 109.47417 * 60.00390 * 3 2 1 30 30 H 1.09002 * 109.47492 * 300.00139 * 3 2 1 31 31 H 0.96997 * 119.99617 * 180.02562 * 8 7 5 32 32 H 1.08001 * 120.05508 * 0.02562 * 18 17 15 33 33 H 1.08006 * 119.93944 * 180.02562 * 19 18 17 34 34 H 0.96699 * 114.00444 * 89.99690 * 21 20 19 35 35 H 1.07999 * 119.94069 * 179.70544 * 22 20 19 36 36 H 1.08002 * 120.05658 * 180.25057 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1844 1.4917 1.1741 6 1 5.1040 0.9371 1.2897 7 6 3.6934 2.2604 2.2346 8 7 4.0356 1.9732 3.4642 9 14 2.5490 3.6973 1.8950 10 1 1.1393 3.2491 2.0263 11 1 2.8159 4.7841 2.8711 12 1 2.7820 4.2008 0.5175 13 6 4.1784 1.3939 -1.1670 14 8 5.3915 1.3150 -1.1657 15 6 3.4389 1.4365 -2.4533 16 8 2.9909 0.4124 -2.9311 17 6 3.2479 2.7188 -3.1503 18 6 2.6473 2.7484 -4.4152 19 6 2.4722 3.9453 -5.0605 20 6 2.8905 5.1291 -4.4612 21 8 2.7155 6.3108 -5.1040 22 6 3.4928 5.1045 -3.2074 23 6 3.6669 3.9133 -2.5511 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.6948 2.5061 4.1995 32 1 2.3226 1.8298 -4.8814 33 1 2.0087 3.9692 -6.0358 34 1 1.8716 6.7420 -4.9117 35 1 3.8201 6.0257 -2.7484 36 1 4.1309 3.8957 -1.5760 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280954344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:49 Heat of formation + Delta-G solvation = -96.282296 kcal Electronic energy + Delta-G solvation = -21793.627327 eV Core-core repulsion = 18436.000777 eV Total energy + Delta-G solvation = -3357.626550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89305 -40.52813 -39.35620 -37.56663 -37.51038 -34.82455 -33.56277 -32.33742 -31.50304 -28.36898 -27.45962 -25.63212 -23.96784 -23.18901 -22.85083 -20.60143 -19.52002 -19.16124 -18.66456 -18.06836 -17.59283 -16.77857 -16.46704 -16.19664 -15.76826 -15.67248 -15.29301 -15.10039 -14.87217 -14.66256 -14.50493 -14.16401 -13.80391 -13.51844 -13.38056 -13.19027 -13.07070 -12.64634 -12.54380 -12.29632 -12.24490 -11.93957 -11.61191 -11.51248 -11.07729 -10.32393 -10.22050 -9.97252 -9.82141 -8.64370 -6.22557 -0.70039 0.25615 0.94989 1.12536 1.23459 1.40313 1.52299 2.08583 2.15631 2.53428 2.70738 3.10817 3.22804 3.60718 3.78893 3.84027 3.92492 4.01653 4.19097 4.23469 4.34337 4.47128 4.52358 4.63485 4.86176 4.90738 5.07142 5.10752 5.17422 5.19461 5.24170 5.28991 5.41205 5.62644 5.92507 5.99886 6.28882 6.69747 6.78858 7.05716 7.53908 8.51390 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.006894 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.063790 B = 4060.622294 C = 4567.824388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.081 3.919 4 N -0.434 5.434 5 C -0.356 4.356 6 H 0.049 0.951 7 C 0.031 3.969 8 N -0.882 5.882 9 Si 0.930 3.070 10 H -0.237 1.237 11 H -0.276 1.276 12 H -0.245 1.245 13 C 0.415 3.585 14 O -0.596 6.596 15 C 0.409 3.591 16 O -0.450 6.450 17 C -0.196 4.196 18 C -0.032 4.032 19 C -0.151 4.151 20 C 0.161 3.839 21 O -0.499 6.499 22 C -0.161 4.161 23 C -0.056 4.056 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.288 0.712 32 H 0.152 0.848 33 H 0.172 0.828 34 H 0.421 0.579 35 H 0.152 0.848 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 9.249 -13.888 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C -0.041 4.041 4 N -0.153 5.153 5 C -0.483 4.483 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.516 5.516 9 Si 0.751 3.249 10 H -0.162 1.162 11 H -0.202 1.202 12 H -0.169 1.169 13 C 0.203 3.797 14 O -0.482 6.482 15 C 0.284 3.716 16 O -0.324 6.324 17 C -0.197 4.197 18 C -0.051 4.051 19 C -0.169 4.169 20 C 0.116 3.884 21 O -0.314 6.314 22 C -0.179 4.179 23 C -0.075 4.075 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.189 0.811 34 H 0.283 0.717 35 H 0.170 0.830 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.317 8.582 -14.126 20.613 hybrid contribution 0.138 0.220 1.045 1.077 sum -12.179 8.802 -13.081 19.923 Atomic orbital electron populations 1.21675 0.92164 1.03196 1.02679 1.21881 0.98437 0.95351 1.01926 1.22257 0.79905 0.99268 1.02642 1.43468 1.05683 1.61980 1.04217 1.18571 1.09692 1.31222 0.88846 0.93300 1.26227 0.98778 0.99047 0.93531 1.69598 1.43950 1.38197 0.99890 0.86127 0.79656 0.78848 0.80301 1.16152 1.20231 1.16868 1.20923 0.88337 0.84145 0.86286 1.90666 1.14937 1.55500 1.87123 1.22375 0.74274 0.89603 0.85320 1.90549 1.39537 1.36473 1.65861 1.20206 1.08474 0.92418 0.98628 1.21295 0.92716 0.99978 0.91075 1.21549 1.02445 0.90522 1.02368 1.18831 0.93934 0.86547 0.89114 1.84674 1.45014 1.32655 1.69053 1.21439 1.02717 0.98484 0.95275 1.21266 0.94733 0.92216 0.99238 0.90856 0.92019 0.91180 0.92416 0.92894 0.90286 0.89782 0.90193 0.83037 0.81066 0.71707 0.82984 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.91 71.98 0.71 -2.99 16 2 C -0.14 -5.07 6.25 30.59 0.19 -4.88 16 3 C 0.08 3.28 3.98 86.38 0.34 3.63 16 4 N -0.43 -21.90 2.16 -638.28 -1.38 -23.28 16 5 C -0.36 -20.83 9.37 84.48 0.79 -20.04 16 6 H 0.05 3.37 7.84 -2.91 -0.02 3.35 16 7 C 0.03 1.68 5.27 85.24 0.45 2.13 16 8 N -0.88 -50.18 13.93 21.81 0.30 -49.87 16 9 Si 0.93 38.67 25.15 68.60 1.73 40.40 16 10 H -0.24 -8.61 6.63 99.48 0.66 -7.95 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 13 C 0.41 21.18 5.98 86.96 0.52 21.70 16 14 O -0.60 -35.61 16.93 -3.91 -0.07 -35.67 16 15 C 0.41 16.95 5.02 27.35 0.14 17.08 16 16 O -0.45 -18.69 16.18 -3.91 -0.06 -18.75 16 17 C -0.20 -6.47 5.87 -20.04 -0.12 -6.59 16 18 C -0.03 -0.80 9.57 22.44 0.21 -0.58 16 19 C -0.15 -2.77 9.95 22.21 0.22 -2.55 16 20 C 0.16 3.12 6.72 22.70 0.15 3.27 16 21 O -0.50 -7.07 13.48 -89.73 -1.21 -8.28 16 22 C -0.16 -3.89 9.95 22.22 0.22 -3.66 16 23 C -0.06 -1.80 9.43 22.44 0.21 -1.59 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.06 2.23 7.19 -2.39 -0.02 2.22 16 28 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 3.18 3.36 -2.39 -0.01 3.17 16 30 H 0.08 2.94 6.88 -2.39 -0.02 2.92 16 31 H 0.29 14.76 8.30 -92.71 -0.77 13.99 16 32 H 0.15 3.32 7.66 -2.91 -0.02 3.30 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.42 1.44 9.06 -74.06 -0.67 0.77 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.11 4.24 7.15 -2.91 -0.02 4.22 16 Total: -1.00 -75.82 312.07 3.76 -72.06 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.40 Total: 18.46 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 4.05 Total: 4.93 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.08 Total: -73.15 kcal Atomic # 8 Polarization: -61.36 SS G_CDS: -1.34 Total: -62.70 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.73 Total: 40.40 kcal Total: -75.82 3.76 -72.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280954344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.224 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds