Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47386 * 2 1 4 4 H 1.09005 * 109.46760 * 305.00355 * 3 2 1 5 5 C 1.50700 * 109.47471 * 184.99852 * 3 2 1 6 6 H 1.07994 * 119.99990 * 239.99730 * 5 3 2 7 7 C 1.37878 * 119.99521 * 59.99495 * 5 3 2 8 8 N 1.31513 * 120.00578 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99626 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46622 * 60.00490 * 9 7 5 11 11 H 1.48499 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47138 * 300.00662 * 9 7 5 13 13 N 1.46500 * 109.47032 * 64.99251 * 3 2 1 14 14 C 1.34770 * 120.00546 * 275.00217 * 13 3 2 15 15 O 1.21369 * 119.99711 * 0.02562 * 14 13 3 16 16 C 1.49255 * 119.99951 * 179.97438 * 14 13 3 17 17 O 1.21413 * 120.00553 * 354.65313 * 16 14 13 18 18 C 1.47080 * 119.99780 * 174.65165 * 16 14 13 19 19 C 1.40119 * 120.11431 * 5.98661 * 18 16 14 20 20 C 1.36586 * 119.87999 * 179.72028 * 19 18 16 21 21 C 1.39168 * 120.11729 * 0.55507 * 20 19 18 22 22 O 1.35626 * 119.88181 * 179.69487 * 21 20 19 23 23 C 1.39163 * 120.22733 * 359.72159 * 21 20 19 24 24 C 1.36583 * 120.12105 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47538 * 299.99816 * 1 2 3 26 26 H 1.09003 * 109.47238 * 60.00183 * 1 2 3 27 27 H 1.09005 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46953 * 239.99719 * 2 1 3 29 29 H 1.09003 * 109.47238 * 119.99817 * 2 1 3 30 30 H 0.96998 * 120.00157 * 179.97438 * 8 7 5 31 31 H 0.97006 * 119.99227 * 95.00127 * 13 3 2 32 32 H 1.07999 * 120.05744 * 359.96926 * 19 18 16 33 33 H 1.08001 * 119.94233 * 180.27110 * 20 19 18 34 34 H 0.96697 * 114.00409 * 270.01492 * 22 21 20 35 35 H 1.08000 * 119.94096 * 179.97438 * 23 21 20 36 36 H 1.07994 * 120.06085 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0049 0.8811 -1.3817 10 1 6.5974 0.1472 -0.2348 11 1 6.3978 0.2175 -2.6508 12 1 6.4994 2.2813 -1.3821 13 7 1.6523 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3401 2.6319 0.4336 16 6 0.0400 3.3312 2.6424 17 8 0.7747 3.2793 3.6076 18 6 -1.2394 4.0514 2.7301 19 6 -2.1451 4.0083 1.6618 20 6 -3.3343 4.6741 1.7506 21 6 -3.6422 5.4039 2.8949 22 8 -4.8218 6.0684 2.9755 23 6 -2.7437 5.4547 3.9564 24 6 -1.5544 4.7874 3.8802 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0606 -2.9501 31 1 2.2718 2.1231 1.9978 32 1 -1.9049 3.4463 0.7714 33 1 -4.0350 4.6380 0.9296 34 1 -4.7854 6.9762 2.6445 35 1 -2.9872 6.0228 4.8420 36 1 -0.8577 4.8277 4.7044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281283222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -83.414745 kcal Electronic energy + Delta-G solvation = -21007.426751 eV Core-core repulsion = 17650.358180 eV Total energy + Delta-G solvation = -3357.068571 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56245 -39.38857 -38.11356 -36.71059 -35.27235 -32.48539 -31.30740 -31.00850 -30.30510 -27.33873 -25.34914 -23.28250 -22.85063 -22.09113 -20.05595 -19.51779 -18.65033 -17.81943 -16.76181 -16.17809 -15.77659 -15.43218 -15.28819 -15.10048 -14.46752 -14.33153 -13.83013 -13.70026 -13.33380 -12.76737 -12.67275 -12.26270 -12.22416 -12.02091 -11.61029 -11.35551 -11.17534 -11.02531 -10.87321 -10.54648 -10.37537 -10.25980 -9.70724 -9.22029 -9.16263 -8.84085 -8.77175 -8.57582 -8.04939 -6.19056 -4.29053 0.33301 1.30769 1.78198 3.23377 3.27621 3.28734 3.32040 3.38431 3.80237 3.99200 4.28696 4.69629 4.77636 4.83658 5.11101 5.13746 5.24649 5.40706 5.62584 5.94514 6.10202 6.24792 6.29196 6.31151 6.36049 6.53801 6.65056 6.93108 7.01137 7.17599 7.22212 7.27224 7.36997 7.52779 7.63368 7.78344 8.07090 8.41823 8.61641 8.85300 9.37861 10.86154 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.003883 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.753867 B = 7208.528561 C = 7563.612096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.266 3.734 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.671 5.671 14 C 0.472 3.528 15 O -0.522 6.522 16 C 0.389 3.611 17 O -0.432 6.432 18 C -0.176 4.176 19 C -0.046 4.046 20 C -0.167 4.167 21 C 0.138 3.862 22 O -0.500 6.500 23 C -0.170 4.170 24 C -0.042 4.042 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.103 0.897 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.399 0.601 32 H 0.182 0.818 33 H 0.135 0.865 34 H 0.394 0.606 35 H 0.132 0.868 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.863 8.813 8.372 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.165 3.835 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.319 5.319 14 C 0.254 3.746 15 O -0.402 6.402 16 C 0.263 3.737 17 O -0.306 6.306 18 C -0.177 4.177 19 C -0.063 4.063 20 C -0.185 4.185 21 C 0.094 3.906 22 O -0.312 6.312 23 C -0.189 4.189 24 C -0.060 4.060 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.121 0.879 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.233 0.767 32 H 0.198 0.802 33 H 0.152 0.848 34 H 0.251 0.749 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.161 8.115 8.256 16.081 hybrid contribution 1.318 0.475 0.113 1.406 sum -9.843 8.590 8.369 15.515 Atomic orbital electron populations 1.21863 0.98260 0.98452 1.01093 1.21958 0.92692 0.99390 1.02719 1.19005 0.94722 0.89441 0.80330 0.92664 1.21173 0.90399 1.39558 1.06578 0.91907 1.24866 0.98789 0.94580 0.95243 1.69868 1.35356 1.37331 1.09302 0.86476 0.84573 0.78406 0.77505 1.20068 1.21075 1.20116 1.46603 1.13829 1.52434 1.19083 1.20353 0.84189 0.81488 0.88580 1.90471 1.50386 1.59546 1.39824 1.22827 0.85394 0.77341 0.88133 1.90545 1.51320 1.50227 1.38466 1.20283 0.96746 1.03912 0.96787 1.22522 0.90831 0.93635 0.99318 1.21345 0.98263 1.00926 0.98008 1.18988 0.84520 0.94036 0.93097 1.84709 1.29576 1.30419 1.86464 1.21075 0.94131 1.03713 0.99936 1.21052 0.95830 0.92657 0.96496 0.94518 0.92885 0.95503 0.87885 0.94743 0.92378 0.76661 0.80176 0.84758 0.74885 0.84969 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.62 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.27 6.44 2.24 -69.08 -0.15 6.28 16 4 H 0.06 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.90 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.89 11.29 55.43 0.63 -23.26 16 9 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 13 N -0.67 -13.88 5.01 -55.43 -0.28 -14.15 16 14 C 0.47 9.06 6.41 -11.68 -0.07 8.99 16 15 O -0.52 -10.61 10.54 5.48 0.06 -10.55 16 16 C 0.39 6.50 7.16 -31.42 -0.22 6.27 16 17 O -0.43 -7.51 16.50 5.44 0.09 -7.42 16 18 C -0.18 -2.56 5.88 -104.90 -0.62 -3.18 16 19 C -0.05 -0.64 9.25 -39.47 -0.37 -1.00 16 20 C -0.17 -1.97 9.93 -39.83 -0.40 -2.37 16 21 C 0.14 1.51 6.72 -38.89 -0.26 1.25 16 22 O -0.50 -4.53 13.48 -18.58 -0.25 -4.78 16 23 C -0.17 -1.82 9.93 -39.84 -0.40 -2.22 16 24 C -0.04 -0.52 9.55 -39.47 -0.38 -0.89 16 25 H 0.04 0.74 5.64 -51.93 -0.29 0.45 16 26 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 31 H 0.40 7.72 8.02 -40.82 -0.33 7.39 16 32 H 0.18 2.80 4.83 -52.55 -0.25 2.55 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.39 1.57 9.06 45.56 0.41 1.98 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.14 1.54 7.66 -52.49 -0.40 1.13 16 LS Contribution 307.76 15.07 4.64 4.64 Total: -1.00 -28.94 307.76 -6.43 -35.37 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -3.21 Total: 10.07 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -3.09 Total: -5.14 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.35 Total: -37.41 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.10 Total: -22.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.94 -6.43 -35.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281283222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.040 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds