Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47386 * 2 1 4 4 H 1.09005 * 109.46760 * 305.00355 * 3 2 1 5 5 C 1.50700 * 109.47471 * 184.99852 * 3 2 1 6 6 H 1.07994 * 119.99990 * 239.99730 * 5 3 2 7 7 C 1.37878 * 119.99521 * 59.99495 * 5 3 2 8 8 N 1.31513 * 120.00578 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99626 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46622 * 60.00490 * 9 7 5 11 11 H 1.48499 * 109.46962 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47138 * 300.00662 * 9 7 5 13 13 N 1.46500 * 109.47032 * 64.99251 * 3 2 1 14 14 C 1.34770 * 120.00546 * 275.00217 * 13 3 2 15 15 O 1.21369 * 119.99711 * 0.02562 * 14 13 3 16 16 C 1.49255 * 119.99951 * 179.97438 * 14 13 3 17 17 O 1.21413 * 120.00553 * 354.65313 * 16 14 13 18 18 C 1.47080 * 119.99780 * 174.65165 * 16 14 13 19 19 C 1.40119 * 120.11431 * 5.98661 * 18 16 14 20 20 C 1.36586 * 119.87999 * 179.72028 * 19 18 16 21 21 C 1.39168 * 120.11729 * 0.55507 * 20 19 18 22 22 O 1.35626 * 119.88181 * 179.69487 * 21 20 19 23 23 C 1.39163 * 120.22733 * 359.72159 * 21 20 19 24 24 C 1.36583 * 120.12105 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.47538 * 299.99816 * 1 2 3 26 26 H 1.09003 * 109.47238 * 60.00183 * 1 2 3 27 27 H 1.09005 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46953 * 239.99719 * 2 1 3 29 29 H 1.09003 * 109.47238 * 119.99817 * 2 1 3 30 30 H 0.96998 * 120.00157 * 179.97438 * 8 7 5 31 31 H 0.97006 * 119.99227 * 95.00127 * 13 3 2 32 32 H 1.07999 * 120.05744 * 359.96926 * 19 18 16 33 33 H 1.08001 * 119.94233 * 180.27110 * 20 19 18 34 34 H 0.96697 * 114.00409 * 270.01492 * 22 21 20 35 35 H 1.08000 * 119.94096 * 179.97438 * 23 21 20 36 36 H 1.07994 * 120.06085 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0049 0.8811 -1.3817 10 1 6.5974 0.1472 -0.2348 11 1 6.3978 0.2175 -2.6508 12 1 6.4994 2.2813 -1.3821 13 7 1.6523 2.0975 1.2517 14 6 0.4351 2.6644 1.3668 15 8 -0.3401 2.6319 0.4336 16 6 0.0400 3.3312 2.6424 17 8 0.7747 3.2793 3.6076 18 6 -1.2394 4.0514 2.7301 19 6 -2.1451 4.0083 1.6618 20 6 -3.3343 4.6741 1.7506 21 6 -3.6422 5.4039 2.8949 22 8 -4.8218 6.0684 2.9755 23 6 -2.7437 5.4547 3.9564 24 6 -1.5544 4.7874 3.8802 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0606 -2.9501 31 1 2.2718 2.1231 1.9978 32 1 -1.9049 3.4463 0.7714 33 1 -4.0350 4.6380 0.9296 34 1 -4.7854 6.9762 2.6445 35 1 -2.9872 6.0228 4.8420 36 1 -0.8577 4.8277 4.7044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281283222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -103.458820 kcal Electronic energy + Delta-G solvation = -21008.295927 eV Core-core repulsion = 17650.358180 eV Total energy + Delta-G solvation = -3357.937747 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.85549 -40.47489 -39.53233 -37.66145 -36.99266 -34.36198 -32.81874 -32.24869 -31.32782 -29.19533 -26.73395 -24.99413 -23.88547 -23.34471 -21.67258 -21.15192 -19.46615 -19.31340 -18.06412 -17.91187 -17.19706 -16.73454 -16.54442 -16.42370 -15.99007 -15.40342 -15.31738 -15.04779 -14.61359 -14.49439 -13.84184 -13.70837 -13.48187 -13.22188 -13.14076 -13.09503 -12.92583 -12.67589 -12.46546 -12.15400 -12.09424 -11.60388 -11.43648 -11.10813 -10.57126 -10.26074 -10.15476 -9.81436 -9.74665 -8.18377 -6.35689 -0.78934 0.37909 0.57120 1.45314 1.46403 1.54176 1.90381 2.04296 2.41976 2.69530 3.11034 3.18477 3.32950 3.71722 3.87966 3.99568 4.29864 4.43583 4.48924 4.55617 4.70057 4.76499 5.02252 5.04676 5.16387 5.21553 5.27187 5.29477 5.39403 5.48742 5.56380 5.68367 5.75542 5.80569 5.97315 6.12468 6.67244 6.73668 6.79685 7.15927 7.37019 8.86414 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.003883 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.753867 B = 7208.528561 C = 7563.612096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.275 3.725 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.677 5.677 14 C 0.468 3.532 15 O -0.534 6.534 16 C 0.400 3.600 17 O -0.443 6.443 18 C -0.199 4.199 19 C -0.056 4.056 20 C -0.172 4.172 21 C 0.156 3.844 22 O -0.503 6.503 23 C -0.164 4.164 24 C -0.037 4.037 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.267 0.733 31 H 0.406 0.594 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.419 0.581 35 H 0.163 0.837 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 10.067 9.993 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C 0.172 3.828 4 H 0.034 0.966 5 C -0.594 4.594 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.793 3.207 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.326 5.326 14 C 0.251 3.749 15 O -0.415 6.415 16 C 0.275 3.725 17 O -0.317 6.317 18 C -0.200 4.200 19 C -0.073 4.073 20 C -0.190 4.190 21 C 0.111 3.889 22 O -0.318 6.318 23 C -0.182 4.182 24 C -0.056 4.056 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.281 0.719 35 H 0.180 0.820 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.080 9.404 9.889 18.225 hybrid contribution 1.419 0.193 -0.390 1.484 sum -10.661 9.597 9.498 17.204 Atomic orbital electron populations 1.21713 0.96520 0.99629 1.00520 1.21813 0.94188 0.98652 1.01539 1.18611 0.93983 0.89556 0.80634 0.96628 1.21509 0.91363 1.39615 1.06921 0.91463 1.25680 1.03157 0.94162 0.94891 1.70002 1.37067 1.37915 1.09722 0.85460 0.79247 0.78449 0.77576 1.19255 1.20863 1.19734 1.46411 1.14845 1.53180 1.18190 1.20952 0.83345 0.80879 0.89680 1.90487 1.50631 1.59601 1.40756 1.22581 0.86299 0.77130 0.86489 1.90536 1.51974 1.51023 1.38197 1.20136 0.95843 1.05680 0.98385 1.22287 0.92000 0.94442 0.98606 1.21476 0.97675 1.00685 0.99166 1.19018 0.84593 0.92935 0.92337 1.84651 1.28358 1.32234 1.86578 1.21363 0.93089 1.03007 1.00787 1.21190 0.96737 0.91937 0.95710 0.94083 0.94364 0.93377 0.90361 0.94400 0.92381 0.75917 0.82320 0.83277 0.71881 0.81976 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.41 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.75 16 3 C 0.27 13.77 2.24 44.24 0.10 13.87 16 4 H 0.02 0.91 7.58 -2.38 -0.02 0.89 16 5 C -0.56 -29.26 8.73 25.60 0.22 -29.04 16 6 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 7 C 0.02 1.17 5.29 84.66 0.45 1.61 16 8 N -0.91 -50.49 11.29 21.45 0.24 -50.25 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 N -0.68 -28.75 5.01 -447.63 -2.24 -31.00 16 14 C 0.47 18.46 6.41 87.21 0.56 19.02 16 15 O -0.53 -22.54 10.54 -3.30 -0.03 -22.57 16 16 C 0.40 13.38 7.16 27.56 0.20 13.58 16 17 O -0.44 -15.23 16.50 -3.44 -0.06 -15.28 16 18 C -0.20 -5.65 5.88 -20.04 -0.12 -5.77 16 19 C -0.06 -1.53 9.25 22.34 0.21 -1.33 16 20 C -0.17 -3.74 9.93 22.11 0.22 -3.52 16 21 C 0.16 2.90 6.72 22.72 0.15 3.06 16 22 O -0.50 -7.08 13.48 -89.38 -1.21 -8.28 16 23 C -0.16 -2.94 9.93 22.11 0.22 -2.72 16 24 C -0.04 -0.84 9.55 22.34 0.21 -0.63 16 25 H 0.04 1.69 5.64 -2.39 -0.01 1.67 16 26 H 0.04 1.71 7.85 -2.39 -0.02 1.69 16 27 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.08 4.18 5.95 -2.39 -0.01 4.16 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.41 15.99 8.02 -92.70 -0.74 15.24 16 32 H 0.16 5.09 4.83 -3.85 -0.02 5.08 16 33 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.42 1.53 9.06 -74.06 -0.67 0.86 16 35 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.15 2.95 7.66 -2.91 -0.02 2.93 16 Total: -1.00 -62.90 307.76 1.65 -61.25 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.28 Total: 24.84 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 3.20 Total: -2.40 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.00 Total: -81.25 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -1.30 Total: -46.14 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -62.90 1.65 -61.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281283222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.211 kcal (2) G-P(sol) polarization free energy of solvation -62.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds