Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46118 * 2 1 4 4 C 1.53043 * 109.44982 * 240.03236 * 2 1 3 5 5 C 1.53187 * 109.31215 * 178.61910 * 4 2 1 6 6 N 1.46931 * 108.77309 * 54.63979 * 5 4 2 7 7 S 1.65604 * 120.62885 * 126.41385 * 6 5 4 8 8 O 1.42100 * 104.27303 * 206.07084 * 7 6 5 9 9 O 1.42092 * 104.27569 * 333.92451 * 7 6 5 10 10 C 1.81402 * 104.44894 * 89.99816 * 7 6 5 11 11 C 1.53000 * 109.46849 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47015 * 180.02562 * 11 10 7 13 13 H 1.08000 * 119.99768 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99835 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99687 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47269 * 90.00027 * 16 14 12 18 18 H 1.48500 * 109.46842 * 209.99948 * 16 14 12 19 19 H 1.48500 * 109.46913 * 329.99911 * 16 14 12 20 20 C 1.46923 * 118.73730 * 306.38501 * 6 5 4 21 21 C 1.53046 * 109.45800 * 119.97300 * 2 1 3 22 22 H 1.08999 * 109.49785 * 61.42553 * 21 2 1 23 23 O 1.42898 * 109.49866 * 301.32176 * 21 2 1 24 24 H 1.09002 * 109.47165 * 300.02251 * 1 2 3 25 25 H 1.09001 * 109.47452 * 60.02628 * 1 2 3 26 26 H 1.09005 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.49738 * 298.57642 * 4 2 1 28 28 H 1.09003 * 109.49388 * 58.63757 * 4 2 1 29 29 H 1.09001 * 109.58881 * 174.42505 * 5 4 2 30 30 H 1.09004 * 109.59068 * 294.85220 * 5 4 2 31 31 H 1.08999 * 109.47400 * 299.99750 * 10 7 6 32 32 H 1.08999 * 109.46901 * 59.99849 * 10 7 6 33 33 H 1.08999 * 109.47135 * 300.00181 * 11 10 7 34 34 H 1.08998 * 109.46974 * 59.99888 * 11 10 7 35 35 H 0.97010 * 119.99695 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.59375 * 293.82604 * 20 6 5 37 37 H 1.09006 * 109.58686 * 173.39604 * 20 6 5 38 38 H 0.96695 * 113.99964 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 3.5711 -0.6889 -1.2645 6 7 4.0676 -1.2493 -0.0003 7 16 5.1661 -2.4886 -0.0005 8 8 4.9456 -3.1525 1.2363 9 8 4.9457 -3.1520 -1.2376 10 6 6.7809 -1.6620 -0.0003 11 6 7.8921 -2.7137 0.0002 12 6 9.2336 -2.0270 0.0010 13 1 9.2881 -0.9484 0.0008 14 6 10.3913 -2.7758 0.0010 15 7 11.5620 -2.1766 0.0012 16 14 10.2970 -4.6415 -0.0008 17 1 10.2728 -5.1346 -1.4012 18 1 11.4826 -5.1976 0.6994 19 1 9.0606 -5.0752 0.6982 20 6 3.5714 -0.6890 1.2640 21 6 2.0398 -0.7209 1.2501 22 1 1.6976 -1.7558 1.2382 23 8 1.5385 -0.0653 2.4166 24 1 -0.3633 0.5142 0.8898 25 1 -0.3634 0.5134 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 1.6973 -1.7556 -1.2384 28 1 1.6565 -0.2210 -2.1398 29 1 3.9412 -1.2848 -2.0987 30 1 3.9142 0.3406 -1.3676 31 1 6.8703 -1.0389 -0.8901 32 1 6.8701 -1.0392 0.8898 33 1 7.8026 -3.3365 0.8902 34 1 7.8030 -3.3368 -0.8897 35 1 12.3765 -2.7034 0.0008 36 1 3.9144 0.3404 1.3672 37 1 3.9416 -1.2851 2.0982 38 1 1.8227 -0.4696 3.2477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305756690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -135.930683 kcal Electronic energy + Delta-G solvation = -20517.541939 eV Core-core repulsion = 17293.640057 eV Total energy + Delta-G solvation = -3223.901882 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.38706 -36.88426 -36.05037 -35.61806 -33.97843 -33.70391 -31.50967 -30.22367 -27.74013 -25.96662 -23.43238 -22.93996 -21.23419 -20.41531 -18.65458 -17.83510 -17.38144 -16.92459 -16.18525 -15.63779 -15.12421 -14.93209 -14.56045 -14.38791 -13.90342 -13.67010 -13.41118 -13.15353 -12.82837 -12.61967 -12.40922 -12.02440 -11.93971 -11.80820 -11.76833 -11.59445 -11.28493 -11.23838 -11.16967 -10.77066 -10.48599 -10.42705 -10.37896 -10.17670 -9.75916 -9.45195 -8.88067 -8.68868 -6.19060 -4.20592 0.55666 2.79932 3.24404 3.31874 3.35655 3.92836 4.12280 4.33385 4.35672 4.50559 4.57368 4.69879 4.86917 5.04342 5.07758 5.12496 5.22801 5.39293 5.41360 5.48635 5.52027 5.56755 5.61200 5.68761 5.78084 5.82528 5.99952 6.13495 6.16662 6.24477 6.48810 6.77969 6.90283 7.42503 7.51835 8.33911 8.81928 9.40444 10.93302 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.004393 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.509202 B = 6372.567204 C = 6449.277722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.078 0.922 4 C -0.126 4.126 5 C 0.114 3.886 6 N -1.002 6.002 7 S 2.587 3.413 8 O -0.964 6.964 9 O -0.962 6.962 10 C -0.581 4.581 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.870 3.130 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 C 0.087 3.913 21 C 0.099 3.901 22 H 0.060 0.940 23 O -0.563 6.563 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.267 0.733 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.265 4.857 0.425 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.165 4.165 5 C -0.011 4.011 6 N -0.839 5.839 7 S 2.686 3.314 8 O -0.955 6.955 9 O -0.952 6.952 10 C -0.714 4.714 11 C -0.046 4.046 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.533 5.533 16 Si 0.696 3.304 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.187 1.187 20 C -0.039 4.039 21 C 0.039 3.961 22 H 0.078 0.922 23 O -0.368 6.368 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -20.612 4.291 -0.018 21.054 hybrid contribution 0.839 -0.665 0.419 1.150 sum -19.772 3.626 0.401 20.106 Atomic orbital electron populations 1.21745 0.94525 1.01778 1.01905 1.21078 0.96357 1.00010 0.92722 0.90313 1.21946 0.95355 1.01620 0.97543 1.21499 0.94486 0.99690 0.85474 1.57843 1.59218 1.55849 1.11021 1.05762 0.76920 0.74549 0.74146 1.93529 1.84874 1.71708 1.45367 1.93536 1.84833 1.71639 1.45214 1.30335 1.17521 1.12652 1.10919 1.19416 0.94222 0.93188 0.97821 1.20845 0.87507 0.95207 1.52371 0.90415 1.24987 0.95256 0.98739 0.94103 1.69885 0.97494 1.36000 1.49913 0.86921 0.78438 0.85923 0.79152 1.19633 1.20704 1.18657 1.22133 0.95211 1.00321 0.86240 1.22118 0.92049 0.95960 0.85974 0.92166 1.86487 1.75366 1.58887 1.16058 0.91827 0.92783 0.92960 0.91123 0.90043 0.88347 0.91188 0.85621 0.85675 0.94979 0.95395 0.92347 0.90625 0.88583 0.77256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.03 37.16 0.34 -0.88 16 2 C -0.08 -0.78 2.43 -90.57 -0.22 -1.00 16 3 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.13 -1.17 5.36 -26.61 -0.14 -1.31 16 5 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 6 N -1.00 -12.70 3.22 -113.52 -0.37 -13.06 16 7 S 2.59 43.19 5.45 -107.50 -0.59 42.61 16 8 O -0.96 -18.31 16.59 -57.54 -0.95 -19.27 16 9 O -0.96 -18.27 16.59 -57.54 -0.95 -19.23 16 10 C -0.58 -10.50 6.12 37.16 0.23 -10.28 16 11 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 12 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 13 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 16 Si 0.87 21.36 27.47 -169.99 -4.67 16.70 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 20 C 0.09 0.96 6.06 -3.71 -0.02 0.94 16 21 C 0.10 1.02 3.07 -26.61 -0.08 0.94 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 O -0.56 -5.35 12.60 -35.23 -0.44 -5.79 16 24 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.10 1.10 6.86 -51.93 -0.36 0.74 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.13 2.06 8.14 -51.92 -0.42 1.64 16 32 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 33 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 34 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 1.08 6.86 -51.93 -0.36 0.72 16 38 H 0.38 2.26 9.08 45.56 0.41 2.68 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -34.34 317.24 -8.17 -42.51 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.28 Total: 0.45 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -0.47 Total: -23.52 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.41 Total: -39.23 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -2.35 Total: -44.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 43.19 SS G_CDS: -0.59 Total: 42.61 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.34 -8.17 -42.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305756690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.422 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds