Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46118 * 2 1 4 4 C 1.53043 * 109.44982 * 240.03236 * 2 1 3 5 5 C 1.53187 * 109.31215 * 178.61910 * 4 2 1 6 6 N 1.46931 * 108.77309 * 54.63979 * 5 4 2 7 7 S 1.65604 * 120.62885 * 126.41385 * 6 5 4 8 8 O 1.42100 * 104.27303 * 206.07084 * 7 6 5 9 9 O 1.42092 * 104.27569 * 333.92451 * 7 6 5 10 10 C 1.81402 * 104.44894 * 89.99816 * 7 6 5 11 11 C 1.53000 * 109.46849 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47015 * 180.02562 * 11 10 7 13 13 H 1.08000 * 119.99768 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99835 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99687 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 11 17 17 H 1.48490 * 109.47269 * 90.00027 * 16 14 12 18 18 H 1.48500 * 109.46842 * 209.99948 * 16 14 12 19 19 H 1.48500 * 109.46913 * 329.99911 * 16 14 12 20 20 C 1.46923 * 118.73730 * 306.38501 * 6 5 4 21 21 C 1.53046 * 109.45800 * 119.97300 * 2 1 3 22 22 H 1.08999 * 109.49785 * 61.42553 * 21 2 1 23 23 O 1.42898 * 109.49866 * 301.32176 * 21 2 1 24 24 H 1.09002 * 109.47165 * 300.02251 * 1 2 3 25 25 H 1.09001 * 109.47452 * 60.02628 * 1 2 3 26 26 H 1.09005 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.49738 * 298.57642 * 4 2 1 28 28 H 1.09003 * 109.49388 * 58.63757 * 4 2 1 29 29 H 1.09001 * 109.58881 * 174.42505 * 5 4 2 30 30 H 1.09004 * 109.59068 * 294.85220 * 5 4 2 31 31 H 1.08999 * 109.47400 * 299.99750 * 10 7 6 32 32 H 1.08999 * 109.46901 * 59.99849 * 10 7 6 33 33 H 1.08999 * 109.47135 * 300.00181 * 11 10 7 34 34 H 1.08998 * 109.46974 * 59.99888 * 11 10 7 35 35 H 0.97010 * 119.99695 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.59375 * 293.82604 * 20 6 5 37 37 H 1.09006 * 109.58686 * 173.39604 * 20 6 5 38 38 H 0.96695 * 113.99964 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 3.5711 -0.6889 -1.2645 6 7 4.0676 -1.2493 -0.0003 7 16 5.1661 -2.4886 -0.0005 8 8 4.9456 -3.1525 1.2363 9 8 4.9457 -3.1520 -1.2376 10 6 6.7809 -1.6620 -0.0003 11 6 7.8921 -2.7137 0.0002 12 6 9.2336 -2.0270 0.0010 13 1 9.2881 -0.9484 0.0008 14 6 10.3913 -2.7758 0.0010 15 7 11.5620 -2.1766 0.0012 16 14 10.2970 -4.6415 -0.0008 17 1 10.2728 -5.1346 -1.4012 18 1 11.4826 -5.1976 0.6994 19 1 9.0606 -5.0752 0.6982 20 6 3.5714 -0.6890 1.2640 21 6 2.0398 -0.7209 1.2501 22 1 1.6976 -1.7558 1.2382 23 8 1.5385 -0.0653 2.4166 24 1 -0.3633 0.5142 0.8898 25 1 -0.3634 0.5134 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 1.6973 -1.7556 -1.2384 28 1 1.6565 -0.2210 -2.1398 29 1 3.9412 -1.2848 -2.0987 30 1 3.9142 0.3406 -1.3676 31 1 6.8703 -1.0389 -0.8901 32 1 6.8701 -1.0392 0.8898 33 1 7.8026 -3.3365 0.8902 34 1 7.8030 -3.3368 -0.8897 35 1 12.3765 -2.7034 0.0008 36 1 3.9144 0.3404 1.3672 37 1 3.9416 -1.2851 2.0982 38 1 1.8227 -0.4696 3.2477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305756690.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -163.281201 kcal Electronic energy + Delta-G solvation = -20518.727946 eV Core-core repulsion = 17293.640057 eV Total energy + Delta-G solvation = -3225.087889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19181 -38.29641 -37.10769 -36.80732 -35.90722 -34.52289 -33.48610 -31.02839 -28.58781 -27.83035 -24.23447 -23.84380 -23.03351 -21.25923 -19.90123 -19.31090 -18.67245 -18.09555 -17.34937 -17.07647 -16.41438 -16.09213 -15.85491 -15.49113 -15.20978 -14.89359 -14.74234 -14.22507 -13.96473 -13.81617 -13.44231 -13.29660 -13.25653 -13.09085 -13.08402 -12.97748 -12.82213 -12.51633 -12.25115 -11.96843 -11.91822 -11.72798 -11.54332 -11.33329 -11.22027 -11.10418 -10.85691 -9.90150 -8.37832 -6.43928 -0.78950 1.31363 1.33094 1.43133 1.62661 2.28500 2.76734 2.96064 3.08411 3.25748 3.65519 3.76940 3.85944 3.94154 4.01305 4.10998 4.28694 4.32629 4.46241 4.54648 4.68272 4.69555 4.81259 4.87842 4.91944 5.02981 5.04658 5.09213 5.13680 5.22088 5.42807 5.45954 5.46529 5.57209 6.15281 6.62177 6.84263 7.20674 8.77759 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.037003 B = 0.004393 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.509202 B = 6372.567204 C = 6449.277722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 H 0.084 0.916 4 C -0.122 4.122 5 C 0.103 3.897 6 N -0.993 5.993 7 S 2.616 3.384 8 O -0.987 6.987 9 O -0.984 6.984 10 C -0.588 4.588 11 C -0.017 4.017 12 C -0.529 4.529 13 H 0.049 0.951 14 C 0.014 3.986 15 N -0.940 5.940 16 Si 0.925 3.075 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.250 1.250 20 C 0.081 3.919 21 C 0.102 3.898 22 H 0.050 0.950 23 O -0.569 6.569 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.270 0.730 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.137 4.882 0.191 22.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.103 4.103 3 H 0.102 0.898 4 C -0.161 4.161 5 C -0.021 4.021 6 N -0.833 5.833 7 S 2.714 3.286 8 O -0.978 6.978 9 O -0.974 6.974 10 C -0.719 4.719 11 C -0.056 4.056 12 C -0.568 4.568 13 H 0.067 0.933 14 C -0.185 4.185 15 N -0.579 5.579 16 Si 0.748 3.252 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.173 1.173 20 C -0.044 4.044 21 C 0.041 3.959 22 H 0.068 0.932 23 O -0.376 6.376 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -22.474 4.316 -0.242 22.886 hybrid contribution 1.353 -0.542 0.516 1.546 sum -21.121 3.774 0.274 21.457 Atomic orbital electron populations 1.21705 0.93914 1.01709 1.02252 1.21114 0.96870 1.00070 0.92205 0.89796 1.21955 0.94161 1.01399 0.98617 1.21812 0.95544 1.00718 0.84057 1.57523 1.57781 1.55338 1.12671 1.04671 0.76382 0.74609 0.72986 1.93495 1.85059 1.72836 1.46388 1.93503 1.85016 1.72726 1.46191 1.30347 1.17391 1.11824 1.12354 1.19375 0.93926 0.94503 0.97817 1.21176 0.89853 0.94284 1.51460 0.93315 1.25880 0.94925 1.03754 0.93919 1.70013 0.98358 1.37978 1.51592 0.86018 0.79152 0.80099 0.79936 1.18443 1.19849 1.17336 1.22348 0.95917 1.00996 0.85160 1.22060 0.91290 0.95728 0.86835 0.93183 1.86468 1.75362 1.59099 1.16679 0.92563 0.91356 0.93243 0.92148 0.87565 0.88929 0.88781 0.84246 0.84438 0.95017 0.95067 0.92080 0.88923 0.88967 0.75603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.03 71.98 0.65 -1.40 16 2 C -0.08 -1.36 2.43 -10.76 -0.03 -1.39 16 3 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.12 -1.94 5.36 30.67 0.16 -1.78 16 5 C 0.10 1.93 6.43 86.36 0.56 2.49 16 6 N -0.99 -23.21 3.22 -513.06 -1.65 -24.87 16 7 S 2.62 83.94 5.45 -56.49 -0.31 83.63 16 8 O -0.99 -36.41 16.59 -127.65 -2.12 -38.53 16 9 O -0.98 -36.18 16.59 -127.65 -2.12 -38.30 16 10 C -0.59 -20.70 6.12 71.98 0.44 -20.26 16 11 C -0.02 -0.80 4.05 29.85 0.12 -0.68 16 12 C -0.53 -29.80 9.66 25.60 0.25 -29.55 16 13 H 0.05 2.93 7.99 -2.91 -0.02 2.91 16 14 C 0.01 0.80 5.47 84.65 0.46 1.26 16 15 N -0.94 -57.62 13.96 21.45 0.30 -57.32 16 16 Si 0.93 43.60 27.47 68.60 1.88 45.48 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 20 C 0.08 1.63 6.06 86.36 0.52 2.15 16 21 C 0.10 1.89 3.07 30.67 0.09 1.98 16 22 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 23 O -0.57 -9.65 12.60 -148.98 -1.88 -11.53 16 24 H 0.06 0.92 7.65 -2.39 -0.02 0.90 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.88 6.86 -2.39 -0.02 1.86 16 30 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 32 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 33 H 0.03 1.46 7.20 -2.39 -0.02 1.45 16 34 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 35 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.92 6.86 -2.38 -0.02 1.91 16 38 H 0.39 3.97 9.08 -74.06 -0.67 3.30 16 Total: -1.00 -73.41 317.24 -2.34 -75.74 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.32 Total: 12.86 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 3.23 Total: -47.17 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.35 Total: -82.19 kcal Atomic # 8 Polarization: -82.25 SS G_CDS: -6.11 Total: -88.36 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Atomic # 16 Polarization: 83.94 SS G_CDS: -0.31 Total: 83.63 kcal Total: -73.41 -2.34 -75.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305756690.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.537 kcal (2) G-P(sol) polarization free energy of solvation -73.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds