Wall clock time and date at job start Mon Mar 30 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 H 1.08998 * 109.47200 * 300.70576 * 3 2 1 5 5 C 1.53000 * 109.47059 * 180.70740 * 3 2 1 6 6 O 1.42898 * 109.47165 * 305.00001 * 5 3 2 7 7 N 1.46502 * 109.46941 * 60.70925 * 3 2 1 8 8 S 1.65605 * 119.99674 * 233.42292 * 7 3 2 9 9 O 1.42095 * 104.27178 * 181.55685 * 8 7 3 10 10 O 1.42099 * 104.27870 * 309.41423 * 8 7 3 11 11 C 1.81401 * 104.44981 * 65.48636 * 8 7 3 12 12 C 1.52999 * 109.47105 * 172.95517 * 11 8 7 13 13 C 1.50697 * 115.54781 * 53.72623 * 12 11 8 14 14 H 1.07997 * 120.00002 * 264.72766 * 13 12 11 15 15 C 1.37878 * 120.00291 * 84.72968 * 13 12 11 16 16 N 1.31512 * 120.00321 * 176.62556 * 15 13 12 17 17 Si 1.86806 * 119.99768 * 356.62752 * 15 13 12 18 18 H 1.48501 * 109.46894 * 88.91702 * 17 15 13 19 19 H 1.48493 * 109.47171 * 208.91656 * 17 15 13 20 20 H 1.48504 * 109.47169 * 328.91453 * 17 15 13 21 21 C 1.52996 * 117.50039 * 268.05332 * 12 11 8 22 22 C 1.53001 * 117.50045 * 199.39439 * 12 11 8 23 23 H 1.08993 * 109.47315 * 63.74412 * 1 2 3 24 24 H 1.09005 * 109.46855 * 183.74901 * 1 2 3 25 25 H 1.08997 * 109.46764 * 303.73870 * 1 2 3 26 26 H 1.09007 * 109.46935 * 240.00167 * 2 1 3 27 27 H 1.09001 * 109.47868 * 120.00329 * 2 1 3 28 28 H 1.09000 * 109.46865 * 185.00211 * 5 3 2 29 29 H 1.08997 * 109.47116 * 65.00229 * 5 3 2 30 30 H 0.96703 * 113.99541 * 180.02562 * 6 5 3 31 31 H 0.96996 * 120.00043 * 53.42423 * 7 3 2 32 32 H 1.08999 * 109.47168 * 292.95907 * 11 8 7 33 33 H 1.09001 * 109.46977 * 52.95842 * 11 8 7 34 34 H 0.96998 * 119.99921 * 180.02562 * 16 15 13 35 35 H 1.09000 * 117.49809 * 0.02562 * 21 12 11 36 36 H 1.09001 * 117.49962 * 145.02332 * 21 12 11 37 37 H 1.09001 * 117.50060 * 214.98620 * 22 12 11 38 38 H 1.09004 * 117.49448 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6663 1.9600 -0.8836 5 6 3.5698 1.4425 -0.0178 6 8 4.0590 0.6652 1.0770 7 7 1.5656 2.1281 1.2047 8 16 0.7504 3.5637 1.0735 9 8 0.4869 3.9409 2.4179 10 8 1.5775 4.3613 0.2375 11 6 -0.7908 3.1327 0.2195 12 6 -1.7164 4.3506 0.1919 13 6 -1.1160 5.6104 -0.3767 14 1 -0.6803 6.3464 0.2828 15 6 -1.1228 5.8236 -1.7389 16 7 -0.6592 6.9519 -2.2303 17 14 -1.7908 4.5096 -2.8865 18 1 -3.2499 4.7121 -3.0747 19 1 -1.1045 4.6041 -4.1999 20 1 -1.5491 3.1682 -2.2970 21 6 -2.7208 4.5007 1.3363 22 6 -3.2048 4.1013 -0.0599 23 1 -0.3633 0.4546 -0.9216 24 1 -0.3633 -1.0255 0.0672 25 1 -0.3633 0.5708 0.8546 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9342 2.4659 0.0718 29 1 3.9223 1.0121 -0.9551 30 1 5.0237 0.6216 1.1283 31 1 1.7290 1.7412 2.0790 32 1 -0.5664 2.8237 -0.8014 33 1 -1.2820 2.3150 0.7469 34 1 -0.6644 7.1020 -3.1886 35 1 -2.7219 3.7320 2.1090 36 1 -2.9476 5.5108 1.6776 37 1 -3.7498 4.8487 -0.6365 38 1 -3.5245 3.0696 -0.2063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331792132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:27 Heat of formation + Delta-G solvation = -103.914500 kcal Electronic energy + Delta-G solvation = -21323.518832 eV Core-core repulsion = 18101.005277 eV Total energy + Delta-G solvation = -3222.513556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.09800 -37.11013 -36.22703 -35.32258 -35.04171 -32.17853 -31.51877 -28.71007 -28.16560 -25.52603 -23.49759 -21.68750 -20.93653 -19.66056 -18.76440 -17.55626 -16.79314 -16.58077 -16.01486 -15.29270 -15.14628 -14.69455 -14.51238 -14.33170 -13.94885 -13.51297 -13.02992 -12.68819 -12.55239 -12.52066 -12.38841 -11.71451 -11.37406 -11.30089 -11.15702 -11.13564 -10.94107 -10.85470 -10.75059 -10.62612 -10.36928 -10.08377 -9.98662 -9.76582 -9.24237 -9.13077 -8.66791 -8.45425 -6.17937 -4.27090 1.02505 3.20003 3.28292 3.30655 3.44903 4.22618 4.32814 4.50496 4.67042 4.78580 4.89918 5.00926 5.08843 5.15145 5.22586 5.36494 5.45463 5.54574 5.64877 5.72535 5.90070 5.90491 5.94509 6.04258 6.05863 6.19521 6.28038 6.39764 6.43090 6.63646 6.86378 7.06736 7.33198 7.55142 7.58948 8.35648 8.86432 9.43353 10.93755 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.007435 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.908099 B = 3765.074517 C = 3846.245879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C 0.154 3.846 4 H 0.099 0.901 5 C 0.064 3.936 6 O -0.569 6.569 7 N -1.122 6.122 8 S 2.618 3.382 9 O -0.969 6.969 10 O -0.938 6.938 11 C -0.585 4.585 12 C 0.004 3.996 13 C -0.519 4.519 14 H 0.086 0.914 15 C 0.094 3.906 16 N -0.879 5.879 17 Si 0.873 3.127 18 H -0.274 1.274 19 H -0.290 1.290 20 H -0.256 1.256 21 C -0.173 4.173 22 C -0.186 4.186 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.376 0.624 31 H 0.414 0.586 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -15.344 2.672 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.167 4.167 3 C 0.046 3.954 4 H 0.116 0.884 5 C -0.016 4.016 6 O -0.374 6.374 7 N -0.878 5.878 8 S 2.712 3.288 9 O -0.960 6.960 10 O -0.927 6.927 11 C -0.716 4.716 12 C 0.001 3.999 13 C -0.556 4.556 14 H 0.104 0.896 15 C -0.111 4.111 16 N -0.513 5.513 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.181 1.181 21 C -0.210 4.210 22 C -0.225 4.225 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.223 0.777 31 H 0.247 0.753 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.237 -14.367 2.734 15.226 hybrid contribution -0.161 -1.228 -0.921 1.543 sum 4.077 -15.594 1.813 16.220 Atomic orbital electron populations 1.21975 0.95797 1.01900 1.02428 1.21795 0.96003 0.95793 1.03091 1.20836 0.92448 0.94166 0.87931 0.88354 1.22643 0.94618 0.95438 0.88881 1.86436 1.26177 1.73914 1.50876 1.56033 1.73356 1.44627 1.13798 1.04872 0.76439 0.72555 0.74897 1.93506 1.86447 1.80672 1.35342 1.93582 1.64364 1.64885 1.69905 1.30491 1.20378 1.07286 1.13448 1.18800 0.87344 0.92694 1.01021 1.20369 1.40394 1.01823 0.93037 0.89614 1.24927 0.93441 0.94869 0.97906 1.69881 1.44246 1.23853 1.13338 0.86976 0.79466 0.83393 0.80097 1.19979 1.21605 1.18087 1.22942 1.05630 1.01857 0.90616 1.22987 0.99196 1.00186 1.00100 0.92392 0.92527 0.92213 0.91212 0.90422 0.92169 0.92887 0.77738 0.75292 0.85713 0.87302 0.92238 0.90335 0.88762 0.88982 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.15 37.16 0.34 -1.48 16 2 C -0.13 -1.38 5.43 -26.73 -0.15 -1.53 16 3 C 0.15 2.02 2.59 -67.93 -0.18 1.85 16 4 H 0.10 1.33 7.76 -51.93 -0.40 0.93 16 5 C 0.06 0.74 6.88 37.16 0.26 0.99 16 6 O -0.57 -5.98 12.74 -35.23 -0.45 -6.43 16 7 N -1.12 -16.81 4.42 -4.89 -0.02 -16.84 16 8 S 2.62 52.96 4.80 -107.50 -0.52 52.44 16 9 O -0.97 -21.82 18.08 -57.54 -1.04 -22.86 16 10 O -0.94 -22.71 17.09 -57.54 -0.98 -23.69 16 11 C -0.59 -11.35 4.92 37.16 0.18 -11.17 16 12 C 0.00 0.09 0.94 -155.66 -0.15 -0.05 16 13 C -0.52 -14.49 8.13 -34.44 -0.28 -14.77 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 15 C 0.09 2.68 5.47 -17.82 -0.10 2.58 16 16 N -0.88 -26.63 13.96 55.43 0.77 -25.85 16 17 Si 0.87 20.80 25.27 -169.99 -4.30 16.50 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.26 -5.47 5.24 56.52 0.30 -5.18 16 21 C -0.17 -3.55 9.92 -26.70 -0.26 -3.82 16 22 C -0.19 -3.82 7.81 -26.70 -0.21 -4.03 16 23 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.69 5.82 -51.93 -0.30 0.38 16 26 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.08 0.84 7.58 -51.93 -0.39 0.45 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.38 2.33 9.12 45.56 0.42 2.75 16 31 H 0.41 5.57 8.92 -34.48 -0.31 5.26 16 32 H 0.12 2.34 5.74 -51.92 -0.30 2.05 16 33 H 0.11 1.71 6.64 -51.92 -0.34 1.36 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 37 H 0.09 1.97 7.59 -51.93 -0.39 1.58 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -35.05 317.67 -7.35 -42.40 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.07 Total: 10.97 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: -0.54 Total: -31.43 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.75 Total: -42.69 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.47 Total: -52.99 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.30 Total: 16.50 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.52 Total: 52.44 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.05 -7.35 -42.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331792132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.511 kcal (2) G-P(sol) polarization free energy of solvation -35.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds