Wall clock time and date at job start Mon Mar 30 2020 01:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 H 1.08998 * 109.47200 * 300.70576 * 3 2 1 5 5 C 1.53000 * 109.47059 * 180.70740 * 3 2 1 6 6 O 1.42898 * 109.47165 * 305.00001 * 5 3 2 7 7 N 1.46502 * 109.46941 * 60.70925 * 3 2 1 8 8 S 1.65605 * 119.99674 * 233.42292 * 7 3 2 9 9 O 1.42095 * 104.27178 * 181.55685 * 8 7 3 10 10 O 1.42099 * 104.27870 * 309.41423 * 8 7 3 11 11 C 1.81401 * 104.44981 * 65.48636 * 8 7 3 12 12 C 1.52999 * 109.47105 * 172.95517 * 11 8 7 13 13 C 1.50697 * 115.54781 * 53.72623 * 12 11 8 14 14 H 1.07997 * 120.00002 * 264.72766 * 13 12 11 15 15 C 1.37878 * 120.00291 * 84.72968 * 13 12 11 16 16 N 1.31512 * 120.00321 * 176.62556 * 15 13 12 17 17 Si 1.86806 * 119.99768 * 356.62752 * 15 13 12 18 18 H 1.48501 * 109.46894 * 88.91702 * 17 15 13 19 19 H 1.48493 * 109.47171 * 208.91656 * 17 15 13 20 20 H 1.48504 * 109.47169 * 328.91453 * 17 15 13 21 21 C 1.52996 * 117.50039 * 268.05332 * 12 11 8 22 22 C 1.53001 * 117.50045 * 199.39439 * 12 11 8 23 23 H 1.08993 * 109.47315 * 63.74412 * 1 2 3 24 24 H 1.09005 * 109.46855 * 183.74901 * 1 2 3 25 25 H 1.08997 * 109.46764 * 303.73870 * 1 2 3 26 26 H 1.09007 * 109.46935 * 240.00167 * 2 1 3 27 27 H 1.09001 * 109.47868 * 120.00329 * 2 1 3 28 28 H 1.09000 * 109.46865 * 185.00211 * 5 3 2 29 29 H 1.08997 * 109.47116 * 65.00229 * 5 3 2 30 30 H 0.96703 * 113.99541 * 180.02562 * 6 5 3 31 31 H 0.96996 * 120.00043 * 53.42423 * 7 3 2 32 32 H 1.08999 * 109.47168 * 292.95907 * 11 8 7 33 33 H 1.09001 * 109.46977 * 52.95842 * 11 8 7 34 34 H 0.96998 * 119.99921 * 180.02562 * 16 15 13 35 35 H 1.09000 * 117.49809 * 0.02562 * 21 12 11 36 36 H 1.09001 * 117.49962 * 145.02332 * 21 12 11 37 37 H 1.09001 * 117.50060 * 214.98620 * 22 12 11 38 38 H 1.09004 * 117.49448 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6663 1.9600 -0.8836 5 6 3.5698 1.4425 -0.0178 6 8 4.0590 0.6652 1.0770 7 7 1.5656 2.1281 1.2047 8 16 0.7504 3.5637 1.0735 9 8 0.4869 3.9409 2.4179 10 8 1.5775 4.3613 0.2375 11 6 -0.7908 3.1327 0.2195 12 6 -1.7164 4.3506 0.1919 13 6 -1.1160 5.6104 -0.3767 14 1 -0.6803 6.3464 0.2828 15 6 -1.1228 5.8236 -1.7389 16 7 -0.6592 6.9519 -2.2303 17 14 -1.7908 4.5096 -2.8865 18 1 -3.2499 4.7121 -3.0747 19 1 -1.1045 4.6041 -4.1999 20 1 -1.5491 3.1682 -2.2970 21 6 -2.7208 4.5007 1.3363 22 6 -3.2048 4.1013 -0.0599 23 1 -0.3633 0.4546 -0.9216 24 1 -0.3633 -1.0255 0.0672 25 1 -0.3633 0.5708 0.8546 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9342 2.4659 0.0718 29 1 3.9223 1.0121 -0.9551 30 1 5.0237 0.6216 1.1283 31 1 1.7290 1.7412 2.0790 32 1 -0.5664 2.8237 -0.8014 33 1 -1.2820 2.3150 0.7469 34 1 -0.6644 7.1020 -3.1886 35 1 -2.7219 3.7320 2.1090 36 1 -2.9476 5.5108 1.6776 37 1 -3.7498 4.8487 -0.6365 38 1 -3.5245 3.0696 -0.2063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331792132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:26 Heat of formation + Delta-G solvation = -134.659347 kcal Electronic energy + Delta-G solvation = -21324.852029 eV Core-core repulsion = 18101.005277 eV Total energy + Delta-G solvation = -3223.846752 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.05200 -38.82624 -37.91614 -36.77428 -36.22275 -34.30217 -32.52809 -30.19479 -29.23577 -27.58839 -24.35372 -23.30767 -21.93243 -21.36947 -20.34566 -18.84230 -18.44332 -17.94557 -17.29461 -16.92000 -16.88065 -15.97576 -15.67511 -15.53189 -15.19140 -14.85257 -14.73044 -14.44703 -14.13598 -13.62076 -13.25482 -13.16830 -12.97044 -12.91394 -12.82512 -12.59752 -12.38154 -12.23662 -12.08902 -11.89927 -11.71673 -11.69524 -11.64132 -10.95860 -10.84711 -10.70880 -10.47814 -10.10103 -8.32524 -6.47668 -0.54449 1.33934 1.36870 1.48463 2.04972 2.35313 2.91526 3.00314 3.17219 3.41341 3.45689 3.70571 3.83965 4.05775 4.13894 4.30171 4.34171 4.38399 4.43826 4.54001 4.61093 4.62537 4.82875 4.87320 4.95797 5.01173 5.05962 5.19410 5.22775 5.43796 5.47068 5.52843 5.62412 6.18324 6.20819 6.64589 6.93698 7.27012 8.84147 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.007435 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.908099 B = 3765.074517 C = 3846.245879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.119 4.119 3 C 0.138 3.862 4 H 0.093 0.907 5 C 0.064 3.936 6 O -0.577 6.577 7 N -1.104 6.104 8 S 2.618 3.382 9 O -1.003 7.003 10 O -0.992 6.992 11 C -0.573 4.573 12 C -0.032 4.032 13 C -0.523 4.523 14 H 0.025 0.975 15 C 0.030 3.970 16 N -0.939 5.939 17 Si 0.930 3.070 18 H -0.260 1.260 19 H -0.293 1.293 20 H -0.209 1.209 21 C -0.171 4.171 22 C -0.166 4.166 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.395 0.605 31 H 0.422 0.578 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.269 0.731 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -19.811 2.254 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.158 4.158 3 C 0.031 3.969 4 H 0.111 0.889 5 C -0.015 4.015 6 O -0.385 6.385 7 N -0.864 5.864 8 S 2.715 3.285 9 O -0.993 6.993 10 O -0.982 6.982 11 C -0.705 4.705 12 C -0.035 4.035 13 C -0.560 4.560 14 H 0.043 0.957 15 C -0.170 4.170 16 N -0.577 5.577 17 Si 0.752 3.248 18 H -0.185 1.185 19 H -0.220 1.220 20 H -0.131 1.131 21 C -0.208 4.208 22 C -0.205 4.205 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.245 0.755 31 H 0.258 0.742 32 H 0.154 0.846 33 H 0.175 0.825 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.008 -18.849 2.369 19.233 hybrid contribution 0.303 0.221 -0.681 0.777 sum 3.311 -18.628 1.688 18.995 Atomic orbital electron populations 1.22057 0.95693 1.03025 1.02090 1.21744 0.96108 0.93727 1.04175 1.21213 0.93607 0.95479 0.86580 0.88930 1.22559 0.93776 0.94675 0.90524 1.86383 1.28150 1.73389 1.50576 1.55494 1.72678 1.43031 1.15189 1.04461 0.76957 0.73269 0.73812 1.93448 1.87000 1.82069 1.36771 1.93522 1.66217 1.67566 1.70877 1.30306 1.18707 1.06930 1.14563 1.18733 0.89160 0.91997 1.03568 1.20469 1.39943 1.03022 0.92602 0.95701 1.25972 0.93739 0.97363 0.99897 1.70062 1.47004 1.26848 1.13776 0.86057 0.79178 0.82258 0.77287 1.18490 1.22022 1.13146 1.23052 1.03931 1.02305 0.91541 1.23078 0.95996 1.02280 0.99110 0.92456 0.90760 0.92751 0.89161 0.90240 0.94584 0.90053 0.75549 0.74175 0.84570 0.82517 0.92241 0.86924 0.90449 0.90314 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.15 71.98 0.66 -2.32 16 2 C -0.12 -2.09 5.43 30.59 0.17 -1.92 16 3 C 0.14 3.30 2.59 44.99 0.12 3.42 16 4 H 0.09 2.31 7.76 -2.39 -0.02 2.29 16 5 C 0.06 1.37 6.88 71.98 0.50 1.87 16 6 O -0.58 -10.75 12.74 -148.98 -1.90 -12.65 16 7 N -1.10 -31.35 4.42 -169.39 -0.75 -32.10 16 8 S 2.62 105.50 4.80 -56.49 -0.27 105.23 16 9 O -1.00 -45.59 18.08 -127.65 -2.31 -47.90 16 10 O -0.99 -50.03 17.09 -127.65 -2.18 -52.22 16 11 C -0.57 -20.45 4.92 71.98 0.35 -20.10 16 12 C -0.03 -1.42 0.94 -52.93 -0.05 -1.47 16 13 C -0.52 -30.22 8.13 25.60 0.21 -30.01 16 14 H 0.02 1.67 8.06 -2.91 -0.02 1.65 16 15 C 0.03 1.74 5.47 84.66 0.46 2.21 16 16 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 17 Si 0.93 41.53 25.27 68.60 1.73 43.27 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.21 -7.66 5.24 99.48 0.52 -7.14 16 21 C -0.17 -6.65 9.92 30.62 0.30 -6.34 16 22 C -0.17 -6.17 7.81 30.62 0.24 -5.93 16 23 H 0.06 1.01 8.07 -2.39 -0.02 0.99 16 24 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.05 0.98 5.82 -2.39 -0.01 0.97 16 26 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.08 1.40 7.58 -2.39 -0.02 1.38 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.40 3.98 9.12 -74.06 -0.68 3.31 16 31 H 0.42 10.64 8.92 -96.75 -0.86 9.78 16 32 H 0.14 4.55 5.74 -2.39 -0.01 4.54 16 33 H 0.16 4.07 6.64 -2.39 -0.02 4.05 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.08 3.21 8.14 -2.39 -0.02 3.20 16 37 H 0.08 3.15 7.59 -2.39 -0.02 3.13 16 38 H 0.12 3.41 8.14 -2.38 -0.02 3.39 16 Total: -1.00 -81.67 317.67 -3.07 -84.74 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: -0.65 Total: 31.82 kcal Atomic # 6 Polarization: -63.56 SS G_CDS: 2.96 Total: -60.60 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -0.45 Total: -91.69 kcal Atomic # 8 Polarization: -106.38 SS G_CDS: -6.39 Total: -112.77 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.73 Total: 43.27 kcal Atomic # 16 Polarization: 105.50 SS G_CDS: -0.27 Total: 105.23 kcal Total: -81.67 -3.07 -84.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331792132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.923 kcal (2) G-P(sol) polarization free energy of solvation -81.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds