Wall clock time and date at job start Mon Mar 30 2020 01:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47457 * 2 1 4 4 H 1.08993 * 110.88373 * 57.42584 * 3 2 1 5 5 C 1.54911 * 111.00075 * 293.54609 * 3 2 1 6 6 N 1.47426 * 104.83316 * 204.87695 * 5 3 2 7 7 S 1.65595 * 125.64847 * 204.09292 * 6 5 3 8 8 O 1.42093 * 104.27935 * 333.92646 * 7 6 5 9 9 O 1.42105 * 104.27413 * 206.06697 * 7 6 5 10 10 C 1.81401 * 104.44822 * 90.00115 * 7 6 5 11 11 C 1.52997 * 109.47149 * 179.97438 * 10 7 6 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.47021 * 108.69856 * 24.35458 * 6 5 3 21 21 C 1.54336 * 107.26798 * 358.58845 * 20 6 5 22 22 H 1.09004 * 110.51409 * 96.45306 * 21 20 6 23 23 O 1.42902 * 111.00104 * 219.59488 * 21 20 6 24 24 H 1.09000 * 109.46565 * 300.00177 * 1 2 3 25 25 H 1.08996 * 109.46827 * 59.99693 * 1 2 3 26 26 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47296 * 239.99822 * 2 1 3 28 28 H 1.09004 * 109.47371 * 119.99966 * 2 1 3 29 29 H 1.09001 * 110.36558 * 86.03469 * 5 3 2 30 30 H 1.09003 * 110.46097 * 323.76551 * 5 3 2 31 31 H 1.09002 * 109.47085 * 299.99812 * 10 7 6 32 32 H 1.09001 * 109.47417 * 59.99938 * 10 7 6 33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 7 34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 7 35 35 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.87940 * 118.13104 * 20 6 5 37 37 H 1.09003 * 109.88671 * 239.29245 * 20 6 5 38 38 H 0.96692 * 114.00687 * 293.78320 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6528 1.9916 0.8581 5 6 1.6805 2.1585 -1.3258 6 7 2.6880 3.2260 -1.4635 7 16 2.5026 4.6213 -2.3359 8 8 1.5494 4.2860 -3.3349 9 8 3.8285 4.9953 -2.6845 10 6 1.7976 5.8035 -1.1544 11 6 1.5776 7.1489 -1.8488 12 6 0.9914 8.1309 -0.8675 13 1 0.7956 7.8259 0.1499 14 6 0.7058 9.4189 -1.2681 15 7 0.9447 9.7903 -2.5070 16 14 -0.0216 10.6359 -0.0519 17 1 -0.1937 9.9749 1.2667 18 1 0.8923 11.7974 0.0927 19 1 -1.3409 11.1029 -0.5481 20 6 3.8868 2.8436 -0.7032 21 6 3.5907 1.4849 -0.0337 22 1 3.9859 0.6676 -0.6369 23 8 4.1267 1.4388 1.2902 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.6798 2.5866 -1.2664 30 1 1.7462 1.4644 -2.1637 31 1 0.8444 5.4243 -0.7859 32 1 2.4842 5.9346 -0.3180 33 1 2.5310 7.5279 -2.2169 34 1 0.8913 7.0182 -2.6854 35 1 0.7442 10.6966 -2.7888 36 1 4.7385 2.7492 -1.3769 37 1 4.0966 3.5930 0.0600 38 1 5.0927 1.4627 1.3246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340599924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:55 Heat of formation + Delta-G solvation = -137.443143 kcal Electronic energy + Delta-G solvation = -20261.828898 eV Core-core repulsion = 17037.861431 eV Total energy + Delta-G solvation = -3223.967467 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.42610 -36.64444 -35.88314 -35.46682 -34.05303 -33.89047 -31.16556 -29.13165 -28.17936 -25.61173 -23.98052 -22.06284 -21.46676 -20.46489 -18.67785 -17.73905 -17.40441 -16.49295 -16.24131 -15.53657 -15.08152 -14.86881 -14.56032 -14.30454 -13.76761 -13.48757 -13.33677 -13.05079 -12.90598 -12.53031 -12.39209 -11.90962 -11.84378 -11.76317 -11.62743 -11.55937 -11.09892 -11.08612 -10.97025 -10.77769 -10.64587 -10.41456 -10.39720 -10.25347 -9.78065 -9.33676 -8.78977 -8.51372 -6.13262 -4.18795 0.69346 2.97746 3.25063 3.32316 3.36012 3.89844 4.14891 4.24057 4.27811 4.38526 4.70933 4.75987 4.91203 5.00622 5.18418 5.22033 5.25633 5.29605 5.42849 5.57821 5.60273 5.64082 5.68188 5.68390 5.79529 5.85606 6.00604 6.10248 6.15529 6.41631 6.47873 7.28696 7.34503 7.36912 7.80120 8.16697 8.84865 9.46116 10.97844 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022275 B = 0.004474 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.723295 B = 6256.631912 C = 6518.514406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.093 4.093 4 H 0.096 0.904 5 C 0.127 3.873 6 N -1.016 6.016 7 S 2.605 3.395 8 O -0.960 6.960 9 O -0.962 6.962 10 C -0.588 4.588 11 C 0.027 3.973 12 C -0.519 4.519 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.090 3.910 21 C 0.098 3.902 22 H 0.073 0.927 23 O -0.556 6.556 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 -19.578 6.111 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.113 4.113 4 H 0.114 0.886 5 C 0.001 3.999 6 N -0.853 5.853 7 S 2.705 3.295 8 O -0.951 6.951 9 O -0.952 6.952 10 C -0.721 4.721 11 C -0.012 4.012 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.037 4.037 21 C 0.038 3.962 22 H 0.091 0.909 23 O -0.361 6.361 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.339 -19.314 5.155 20.267 hybrid contribution 0.023 0.985 1.052 1.442 sum 3.361 -18.329 6.207 19.641 Atomic orbital electron populations 1.21819 0.95355 1.01806 1.02408 1.21467 0.96292 0.94762 1.02420 1.22471 0.93097 0.97145 0.98604 0.88583 1.22019 0.92058 0.89270 0.96544 1.58834 1.22778 1.35200 1.68501 1.05379 0.74806 0.73512 0.75847 1.93539 1.64156 1.82208 1.55155 1.93533 1.37068 1.82558 1.82072 1.30479 1.11735 1.14326 1.15570 1.18980 0.98747 0.87079 0.96369 1.21040 1.42624 0.95416 0.96816 0.91980 1.25071 0.95530 0.98420 0.95460 1.69969 1.47590 1.18958 1.16355 0.86405 0.78851 0.80923 0.81071 1.19636 1.20777 1.20769 1.22384 0.88136 0.97550 0.95589 1.22902 0.94562 0.95261 0.83508 0.90893 1.86542 1.25982 1.96913 1.26707 0.92451 0.92208 0.92635 0.91711 0.91219 0.90048 0.91057 0.86242 0.86255 0.94836 0.94814 0.92572 0.90862 0.90703 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.76 37.16 0.36 -0.83 16 2 C -0.11 -0.88 5.45 -26.73 -0.15 -1.03 16 3 C -0.09 -0.91 2.80 -88.47 -0.25 -1.16 16 4 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 5 C 0.13 1.48 5.55 -2.53 -0.01 1.46 16 6 N -1.02 -14.28 3.62 -111.41 -0.40 -14.69 16 7 S 2.60 48.15 5.65 -107.50 -0.61 47.54 16 8 O -0.96 -20.18 17.60 -57.54 -1.01 -21.20 16 9 O -0.96 -20.30 17.60 -57.54 -1.01 -21.32 16 10 C -0.59 -11.53 6.12 37.16 0.23 -11.30 16 11 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 16 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.09 1.04 6.68 -3.06 -0.02 1.02 16 21 C 0.10 0.92 3.78 -24.89 -0.09 0.82 16 22 H 0.07 0.57 8.04 -51.93 -0.42 0.15 16 23 O -0.56 -5.00 13.40 -35.23 -0.47 -5.47 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 31 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 32 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.38 1.81 9.12 45.56 0.42 2.22 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -35.43 327.88 -8.74 -44.18 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.41 Total: -0.69 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -0.48 Total: -23.72 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.33 Total: -40.56 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -2.50 Total: -47.98 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 48.15 SS G_CDS: -0.61 Total: 47.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.43 -8.74 -44.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340599924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.266 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds