Wall clock time and date at job start Mon Mar 30 2020 01:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47457 * 2 1 4 4 H 1.08993 * 110.88373 * 57.42584 * 3 2 1 5 5 C 1.54911 * 111.00075 * 293.54609 * 3 2 1 6 6 N 1.47426 * 104.83316 * 204.87695 * 5 3 2 7 7 S 1.65595 * 125.64847 * 204.09292 * 6 5 3 8 8 O 1.42093 * 104.27935 * 333.92646 * 7 6 5 9 9 O 1.42105 * 104.27413 * 206.06697 * 7 6 5 10 10 C 1.81401 * 104.44822 * 90.00115 * 7 6 5 11 11 C 1.52997 * 109.47149 * 179.97438 * 10 7 6 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 7 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46616 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47104 * 119.99966 * 16 14 12 19 19 H 1.48489 * 109.47200 * 240.00246 * 16 14 12 20 20 C 1.47021 * 108.69856 * 24.35458 * 6 5 3 21 21 C 1.54336 * 107.26798 * 358.58845 * 20 6 5 22 22 H 1.09004 * 110.51409 * 96.45306 * 21 20 6 23 23 O 1.42902 * 111.00104 * 219.59488 * 21 20 6 24 24 H 1.09000 * 109.46565 * 300.00177 * 1 2 3 25 25 H 1.08996 * 109.46827 * 59.99693 * 1 2 3 26 26 H 1.09001 * 109.47173 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47296 * 239.99822 * 2 1 3 28 28 H 1.09004 * 109.47371 * 119.99966 * 2 1 3 29 29 H 1.09001 * 110.36558 * 86.03469 * 5 3 2 30 30 H 1.09003 * 110.46097 * 323.76551 * 5 3 2 31 31 H 1.09002 * 109.47085 * 299.99812 * 10 7 6 32 32 H 1.09001 * 109.47417 * 59.99938 * 10 7 6 33 33 H 1.09002 * 109.47153 * 299.99990 * 11 10 7 34 34 H 1.08998 * 109.47533 * 59.99620 * 11 10 7 35 35 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.87940 * 118.13104 * 20 6 5 37 37 H 1.09003 * 109.88671 * 239.29245 * 20 6 5 38 38 H 0.96692 * 114.00687 * 293.78320 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6528 1.9916 0.8581 5 6 1.6805 2.1585 -1.3258 6 7 2.6880 3.2260 -1.4635 7 16 2.5026 4.6213 -2.3359 8 8 1.5494 4.2860 -3.3349 9 8 3.8285 4.9953 -2.6845 10 6 1.7976 5.8035 -1.1544 11 6 1.5776 7.1489 -1.8488 12 6 0.9914 8.1309 -0.8675 13 1 0.7956 7.8259 0.1499 14 6 0.7058 9.4189 -1.2681 15 7 0.9447 9.7903 -2.5070 16 14 -0.0216 10.6359 -0.0519 17 1 -0.1937 9.9749 1.2667 18 1 0.8923 11.7974 0.0927 19 1 -1.3409 11.1029 -0.5481 20 6 3.8868 2.8436 -0.7032 21 6 3.5907 1.4849 -0.0337 22 1 3.9859 0.6676 -0.6369 23 8 4.1267 1.4388 1.2902 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 0.6798 2.5866 -1.2664 30 1 1.7462 1.4644 -2.1637 31 1 0.8444 5.4243 -0.7859 32 1 2.4842 5.9346 -0.3180 33 1 2.5310 7.5279 -2.2169 34 1 0.8913 7.0182 -2.6854 35 1 0.7442 10.6966 -2.7888 36 1 4.7385 2.7492 -1.3769 37 1 4.0966 3.5930 0.0600 38 1 5.0927 1.4627 1.3246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340599924.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:54 Heat of formation + Delta-G solvation = -165.786197 kcal Electronic energy + Delta-G solvation = -20263.057945 eV Core-core repulsion = 17037.861431 eV Total energy + Delta-G solvation = -3225.196514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26052 -38.25070 -37.09504 -36.62693 -35.92920 -34.82746 -33.16120 -29.97591 -29.02840 -27.62401 -24.86396 -23.54299 -22.70188 -21.21592 -20.04617 -19.15775 -18.50431 -18.09232 -17.41254 -17.11061 -16.55339 -16.31859 -15.69635 -15.29859 -15.11583 -14.57883 -14.45673 -14.15643 -14.03322 -13.76708 -13.60765 -13.36000 -13.28695 -13.17292 -12.97384 -12.89950 -12.81922 -12.57414 -12.29781 -12.14598 -11.80973 -11.75697 -11.49158 -11.37430 -11.18585 -10.96469 -10.67802 -9.99310 -8.28534 -6.42913 -0.81077 1.39648 1.40301 1.53771 1.66270 2.36346 2.77879 2.99336 3.05006 3.23283 3.42179 3.64507 3.96323 4.03887 4.07543 4.19183 4.34462 4.35439 4.49563 4.60522 4.63522 4.69644 4.83430 4.85529 4.96739 4.99776 5.16673 5.21858 5.23393 5.24927 5.35710 5.42157 5.53575 5.65627 6.03332 6.70506 6.90156 7.27530 8.84024 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022275 B = 0.004474 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.723295 B = 6256.631912 C = 6518.514406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.087 0.913 5 C 0.115 3.885 6 N -1.011 6.011 7 S 2.633 3.367 8 O -0.988 6.988 9 O -0.991 6.991 10 C -0.588 4.588 11 C 0.020 3.980 12 C -0.540 4.540 13 H 0.074 0.926 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.257 1.257 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.078 3.922 21 C 0.109 3.891 22 H 0.096 0.904 23 O -0.567 6.567 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.268 0.732 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.676 -21.091 8.044 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.106 0.894 5 C -0.009 4.009 6 N -0.851 5.851 7 S 2.732 3.268 8 O -0.979 6.979 9 O -0.981 6.981 10 C -0.720 4.720 11 C -0.019 4.019 12 C -0.579 4.579 13 H 0.092 0.908 14 C -0.201 4.201 15 N -0.573 5.573 16 Si 0.799 3.201 17 H -0.181 1.181 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.048 4.048 21 C 0.048 3.952 22 H 0.113 0.887 23 O -0.375 6.375 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 3.287 -20.826 7.102 22.248 hybrid contribution 0.087 1.364 0.462 1.443 sum 3.374 -19.462 7.564 21.151 Atomic orbital electron populations 1.21840 0.95330 1.02403 1.02016 1.21439 0.96277 0.93415 1.03206 1.22454 0.93660 0.97967 0.96900 0.89423 1.22339 0.91520 0.88788 0.98289 1.58384 1.24497 1.33880 1.68338 1.04199 0.73511 0.73771 0.75360 1.93495 1.64943 1.82819 1.56617 1.93487 1.38288 1.83618 1.82738 1.30388 1.13623 1.11808 1.16153 1.18832 0.96641 0.90350 0.96027 1.21525 1.42510 0.96233 0.97643 0.90809 1.26118 0.95858 1.00732 0.97403 1.70108 1.48889 1.19693 1.18628 0.85244 0.77934 0.78083 0.78865 1.18072 1.20227 1.20201 1.22714 0.87138 0.99228 0.95681 1.22838 0.94254 0.94242 0.83824 0.88656 1.86507 1.27928 1.96740 1.26299 0.92806 0.92682 0.91581 0.90587 0.90688 0.89980 0.89915 0.84290 0.84453 0.97455 0.97375 0.92307 0.90393 0.90552 0.75083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.76 71.98 0.70 -1.39 16 2 C -0.11 -1.38 5.45 30.60 0.17 -1.21 16 3 C -0.09 -1.54 2.80 -9.40 -0.03 -1.57 16 4 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 5 C 0.12 2.48 5.55 86.86 0.48 2.97 16 6 N -1.01 -27.16 3.62 -506.39 -1.83 -28.99 16 7 S 2.63 97.76 5.65 -56.49 -0.32 97.44 16 8 O -0.99 -42.07 17.60 -127.65 -2.25 -44.31 16 9 O -0.99 -42.35 17.60 -127.65 -2.25 -44.59 16 10 C -0.59 -23.10 6.12 71.98 0.44 -22.66 16 11 C 0.02 1.09 4.98 29.85 0.15 1.24 16 12 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 13 H 0.07 3.87 7.74 -2.91 -0.02 3.84 16 14 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 15 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 16 Si 0.98 43.62 29.54 68.60 2.03 45.65 16 17 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 C 0.08 1.66 6.68 86.73 0.58 2.24 16 21 C 0.11 1.73 3.78 31.78 0.12 1.85 16 22 H 0.10 1.13 8.04 -2.38 -0.02 1.11 16 23 O -0.57 -8.49 13.40 -148.98 -2.00 -10.49 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.77 7.45 -2.39 -0.02 0.75 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.84 8.10 -2.39 -0.02 0.82 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.75 8.07 -2.39 -0.02 1.73 16 30 H 0.08 1.62 8.01 -2.39 -0.02 1.60 16 31 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 32 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.08 1.60 8.06 -2.39 -0.02 1.58 16 38 H 0.40 2.59 9.12 -74.06 -0.68 1.91 16 Total: -1.00 -76.83 327.88 -2.66 -79.49 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.36 Total: 11.11 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 3.31 Total: -48.41 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.55 Total: -85.87 kcal Atomic # 8 Polarization: -92.91 SS G_CDS: -6.49 Total: -99.40 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 97.76 SS G_CDS: -0.32 Total: 97.44 kcal Total: -76.83 -2.66 -79.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340599924.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.301 kcal (2) G-P(sol) polarization free energy of solvation -76.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds