Wall clock time and date at job start Mon Mar 30 2020 01:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47528 * 2 1 4 4 H 1.08996 * 110.77902 * 308.24432 * 3 2 1 5 5 C 1.54330 * 110.71573 * 71.47734 * 3 2 1 6 6 N 1.47019 * 107.26866 * 140.55848 * 5 3 2 7 7 S 1.65602 * 125.64643 * 181.02308 * 6 5 3 8 8 O 1.42101 * 104.27813 * 26.08762 * 7 6 5 9 9 O 1.42104 * 104.27715 * 153.94285 * 7 6 5 10 10 C 1.81401 * 104.44914 * 270.01523 * 7 6 5 11 11 C 1.52995 * 109.47166 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.47458 * 180.02562 * 11 10 7 13 13 H 1.07998 * 119.99547 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00490 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99956 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00126 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.46967 * 59.99664 * 16 14 12 18 18 H 1.48506 * 109.46981 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46775 * 299.99502 * 16 14 12 20 20 C 1.47426 * 108.70376 * 1.05523 * 6 5 3 21 21 C 1.54901 * 104.83400 * 335.87327 * 20 6 5 22 22 H 1.09002 * 111.00715 * 278.93203 * 21 20 6 23 23 O 1.42904 * 111.00695 * 155.08140 * 21 20 6 24 24 H 1.08999 * 109.47152 * 299.99937 * 1 2 3 25 25 H 1.09002 * 109.46981 * 59.99794 * 1 2 3 26 26 H 1.08994 * 109.47493 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47152 * 240.00063 * 2 1 3 28 28 H 1.09002 * 109.46981 * 120.00206 * 2 1 3 29 29 H 1.09000 * 109.88165 * 259.97140 * 5 3 2 30 30 H 1.08996 * 109.88261 * 21.13892 * 5 3 2 31 31 H 1.08999 * 109.47299 * 300.00116 * 10 7 6 32 32 H 1.09004 * 109.47136 * 59.99965 * 10 7 6 33 33 H 1.08999 * 109.47204 * 300.00294 * 11 10 7 34 34 H 1.09004 * 109.47024 * 60.00016 * 11 10 7 35 35 H 0.96999 * 120.00578 * 180.02562 * 15 14 12 36 36 H 1.09004 * 110.36498 * 217.03293 * 20 6 5 37 37 H 1.08999 * 110.36381 * 94.71554 * 20 6 5 38 38 H 0.96703 * 113.99522 * 67.79966 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5743 2.0173 -0.8004 5 6 1.7898 2.1100 1.3687 6 7 2.9693 2.9323 1.6755 7 16 3.1896 3.8289 3.0503 8 8 2.3951 3.1720 4.0282 9 8 4.6011 3.9147 3.1902 10 6 2.4899 5.4535 2.6481 11 6 2.6342 6.3837 3.8543 12 6 2.0523 7.7332 3.5205 13 1 1.6223 7.9096 2.5457 14 6 2.0691 8.7426 4.4595 15 7 2.5923 8.5276 5.6467 16 14 1.3472 10.4151 4.0459 17 1 -0.0907 10.2635 3.7075 18 1 1.4873 11.3179 5.2166 19 1 2.0707 10.9930 2.8850 20 6 3.9230 2.8271 0.5562 21 6 3.5861 1.4781 -0.1264 22 1 4.0412 0.6448 0.4091 23 8 3.9878 1.4834 -1.4978 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.9019 2.7402 1.3170 30 1 1.6607 1.3463 2.1356 31 1 3.0216 5.8774 1.7963 32 1 1.4344 5.3430 2.3992 33 1 2.1022 5.9596 4.7059 34 1 3.6895 6.4942 4.1036 35 1 2.6038 9.2376 6.3076 36 1 4.9469 2.8180 0.9299 37 1 3.7805 3.6517 -0.1422 38 1 4.9460 1.5054 -1.6268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340599926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:56 Heat of formation + Delta-G solvation = -165.276977 kcal Electronic energy + Delta-G solvation = -20197.885797 eV Core-core repulsion = 16972.711365 eV Total energy + Delta-G solvation = -3225.174432 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26282 -38.24743 -37.08982 -36.64101 -35.92086 -34.83758 -33.15456 -29.97799 -29.04570 -27.60973 -24.80728 -23.51698 -22.78230 -21.19635 -20.02831 -19.16232 -18.57635 -18.20620 -17.28038 -17.08408 -16.55380 -16.21024 -15.69978 -15.26665 -15.02041 -14.84570 -14.46661 -14.37838 -13.81801 -13.75917 -13.57090 -13.38521 -13.28352 -13.18818 -12.92622 -12.83750 -12.76244 -12.60221 -12.26515 -12.18855 -11.85492 -11.78389 -11.51846 -11.34520 -11.20189 -10.99764 -10.65618 -9.97132 -8.27579 -6.42210 -0.80878 1.40024 1.43563 1.51835 1.65774 2.37009 2.78442 2.99314 3.05748 3.17071 3.50001 3.63454 3.96704 3.97160 4.08168 4.23077 4.30379 4.39646 4.50541 4.57738 4.62491 4.70678 4.84554 4.87398 4.93328 4.98967 5.19563 5.21058 5.23602 5.24108 5.32190 5.43577 5.50922 5.65906 6.03846 6.70835 6.87554 7.28148 8.84512 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.004178 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.569525 B = 6700.717779 C = 6825.070373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.084 4.084 4 H 0.097 0.903 5 C 0.113 3.887 6 N -1.011 6.011 7 S 2.633 3.367 8 O -0.989 6.989 9 O -0.990 6.990 10 C -0.587 4.587 11 C 0.020 3.980 12 C -0.542 4.542 13 H 0.075 0.925 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.975 3.025 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.263 1.263 20 C 0.076 3.924 21 C 0.106 3.894 22 H 0.084 0.916 23 O -0.563 6.563 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.268 0.732 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -15.987 -15.682 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.104 4.104 4 H 0.115 0.885 5 C -0.012 4.012 6 N -0.851 5.851 7 S 2.732 3.268 8 O -0.980 6.980 9 O -0.980 6.980 10 C -0.719 4.719 11 C -0.019 4.019 12 C -0.581 4.581 13 H 0.093 0.907 14 C -0.201 4.201 15 N -0.573 5.573 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.050 4.050 21 C 0.045 3.955 22 H 0.102 0.898 23 O -0.371 6.371 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -1.099 -16.231 -14.742 21.954 hybrid contribution 0.177 1.486 0.167 1.506 sum -0.922 -14.745 -14.575 20.753 Atomic orbital electron populations 1.21819 0.94978 1.02373 1.02149 1.21518 0.96655 0.93791 1.02845 1.22274 0.94162 0.98077 0.95894 0.88456 1.22090 0.87274 0.94325 0.97481 1.58341 1.28880 1.61720 1.36133 1.04177 0.73614 0.76439 0.72557 1.93492 1.72315 1.73628 1.58525 1.93486 1.31410 1.87745 1.85407 1.30388 1.13857 1.18628 1.09071 1.18829 0.96792 0.95119 0.91117 1.21472 1.39774 0.96283 1.00545 0.90730 1.26118 0.95519 1.03812 0.94657 1.70092 1.45860 1.35215 1.06150 0.85352 0.79250 0.77636 0.77940 1.18781 1.20837 1.18772 1.22962 0.93287 1.00560 0.88185 1.22909 0.95333 0.94715 0.82549 0.89815 1.86472 1.30236 1.96965 1.23381 0.92769 0.92249 0.91804 0.90564 0.91480 0.90184 0.90785 0.84252 0.84214 0.97436 0.97448 0.92313 0.89797 0.89678 0.75033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.80 71.98 0.71 -1.35 16 2 C -0.11 -1.56 5.33 30.59 0.16 -1.39 16 3 C -0.08 -1.44 2.67 -9.60 -0.03 -1.46 16 4 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 5 C 0.11 2.47 5.89 86.73 0.51 2.98 16 6 N -1.01 -26.87 3.62 -506.43 -1.83 -28.70 16 7 S 2.63 96.58 5.65 -56.49 -0.32 96.26 16 8 O -0.99 -41.92 17.60 -127.65 -2.25 -44.16 16 9 O -0.99 -41.69 17.28 -127.65 -2.21 -43.89 16 10 C -0.59 -22.71 6.12 71.98 0.44 -22.27 16 11 C 0.02 1.08 4.98 29.85 0.15 1.23 16 12 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 13 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 15 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 16 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 20 C 0.08 1.60 6.81 86.85 0.59 2.19 16 21 C 0.11 1.77 3.88 31.98 0.12 1.89 16 22 H 0.08 1.27 8.05 -2.39 -0.02 1.25 16 23 O -0.56 -8.23 13.47 -148.98 -2.01 -10.23 16 24 H 0.05 0.76 7.68 -2.39 -0.02 0.75 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 0.94 7.93 -2.39 -0.02 0.93 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.65 7.68 -2.39 -0.02 1.64 16 31 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 32 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.08 1.81 7.67 -2.38 -0.02 1.79 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.40 2.56 9.12 -74.06 -0.68 1.89 16 Total: -1.00 -75.81 327.41 -2.58 -78.39 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.36 Total: 11.63 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.35 Total: -47.92 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -1.55 Total: -85.43 kcal Atomic # 8 Polarization: -91.83 SS G_CDS: -6.46 Total: -98.29 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 96.58 SS G_CDS: -0.32 Total: 96.26 kcal Total: -75.81 -2.58 -78.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340599926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.888 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds