Wall clock time and date at job start Mon Mar 30 2020 01:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09003 * 110.63854 * 303.30705 * 3 2 1 5 5 C 1.54316 * 110.72327 * 66.45243 * 3 2 1 6 6 N 1.47026 * 107.27365 * 140.55544 * 5 3 2 7 7 S 1.65595 * 125.65010 * 180.79414 * 6 5 3 8 8 O 1.42099 * 104.27801 * 206.07396 * 7 6 5 9 9 O 1.42095 * 104.27940 * 333.93106 * 7 6 5 10 10 C 1.81400 * 104.44931 * 90.00365 * 7 6 5 11 11 C 1.53000 * 109.47165 * 180.02562 * 10 7 6 12 12 C 1.50703 * 109.47162 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00044 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00082 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99946 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46761 * 60.00147 * 16 14 12 18 18 H 1.48497 * 109.47223 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46757 * 300.00579 * 16 14 12 20 20 C 1.47425 * 108.70074 * 1.05989 * 6 5 3 21 21 C 1.54910 * 104.83231 * 335.87083 * 20 6 5 22 22 H 1.09002 * 111.00267 * 155.08153 * 21 20 6 23 23 O 1.42893 * 111.04029 * 278.91915 * 21 20 6 24 24 H 1.09002 * 109.46917 * 300.00024 * 1 2 3 25 25 H 1.08996 * 109.47245 * 59.99761 * 1 2 3 26 26 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47122 * 239.99465 * 2 1 3 28 28 H 1.09000 * 109.46911 * 119.99862 * 2 1 3 29 29 H 1.09004 * 109.88447 * 21.14413 * 5 3 2 30 30 H 1.08996 * 110.01243 * 260.04843 * 5 3 2 31 31 H 1.09010 * 109.46913 * 299.99498 * 10 7 6 32 32 H 1.08996 * 109.47355 * 59.99732 * 10 7 6 33 33 H 1.08999 * 109.47064 * 299.99930 * 11 10 7 34 34 H 1.09000 * 109.46865 * 59.99855 * 11 10 7 35 35 H 0.96997 * 119.99982 * 179.97438 * 15 14 12 36 36 H 1.09001 * 110.36478 * 94.71036 * 20 6 5 37 37 H 1.08998 * 110.36859 * 217.03414 * 20 6 5 38 38 H 0.96701 * 114.00206 * 292.21720 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6399 1.9914 -0.8525 5 6 1.6784 2.1495 1.3231 6 7 2.8295 2.9819 1.7021 7 16 2.9346 3.9227 3.0608 8 8 3.8554 4.9459 2.7082 9 8 1.5844 4.2303 3.3794 10 6 3.6510 2.8266 4.3161 11 6 3.7995 3.5892 5.6342 12 6 4.3941 2.6784 6.6772 13 1 4.6417 1.6578 6.4251 14 6 4.6230 3.1482 7.9531 15 7 4.3219 4.3912 8.2600 16 14 5.3607 2.0195 9.2459 17 1 6.6947 1.5515 8.7912 18 1 5.5047 2.7596 10.5252 19 1 4.4685 0.8498 9.4488 20 6 3.8722 2.8452 0.6689 21 6 3.5912 1.4762 0.0006 22 1 3.9830 1.4502 -1.0163 23 8 4.1265 0.4052 0.7804 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.4856 1.4084 2.0989 30 1 0.7979 2.7764 1.1825 31 1 2.9960 1.9681 4.4653 32 1 4.6300 2.4830 3.9824 33 1 4.4542 4.4479 5.4853 34 1 2.8202 3.9324 5.9677 35 1 4.4826 4.7216 9.1577 36 1 3.7888 3.6488 -0.0628 37 1 4.8618 2.8482 1.1259 38 1 5.0929 0.3852 0.8103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340599927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:59 Heat of formation + Delta-G solvation = -135.178151 kcal Electronic energy + Delta-G solvation = -20459.130304 eV Core-core repulsion = 17235.261055 eV Total energy + Delta-G solvation = -3223.869249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.45925 -36.59391 -35.51926 -35.38201 -33.98192 -33.85619 -31.13182 -29.26866 -28.15651 -25.57624 -23.90151 -22.06866 -21.41708 -20.17969 -18.71259 -17.78597 -17.40100 -16.49985 -15.77792 -15.47450 -15.06299 -14.84191 -14.55625 -14.38093 -13.86102 -13.56790 -13.26329 -12.90099 -12.55153 -12.51678 -12.33391 -11.90248 -11.73380 -11.60705 -11.59242 -11.51347 -11.06903 -11.04586 -10.94995 -10.77274 -10.57399 -10.42667 -10.35324 -10.22531 -9.72829 -9.29852 -8.68756 -8.48581 -6.10795 -4.16369 0.76020 3.06751 3.28423 3.32987 3.35112 3.90999 4.26718 4.30386 4.33726 4.41769 4.59216 4.80485 5.01684 5.04990 5.21998 5.24183 5.35336 5.39580 5.43347 5.59616 5.61396 5.66941 5.70931 5.82113 5.85655 5.91616 6.08292 6.18911 6.28301 6.49454 6.52540 7.31426 7.37565 7.47966 7.82196 8.19439 8.86832 9.48206 11.00267 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.004760 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.247101 B = 5880.705829 C = 6282.378159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.089 4.089 4 H 0.093 0.907 5 C 0.128 3.872 6 N -1.014 6.014 7 S 2.606 3.394 8 O -0.964 6.964 9 O -0.962 6.962 10 C -0.585 4.585 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.093 3.907 21 C 0.094 3.906 22 H 0.075 0.925 23 O -0.551 6.551 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -8.262 -19.163 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.109 4.109 4 H 0.112 0.888 5 C 0.002 3.998 6 N -0.850 5.850 7 S 2.705 3.295 8 O -0.955 6.955 9 O -0.953 6.953 10 C -0.719 4.719 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.033 4.033 21 C 0.034 3.966 22 H 0.093 0.907 23 O -0.356 6.356 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.661 -7.268 -18.836 20.519 hybrid contribution 1.276 -0.958 0.861 1.813 sum -2.385 -8.226 -17.974 19.911 Atomic orbital electron populations 1.21857 0.95919 1.01720 1.02019 1.21342 0.95283 0.94714 1.03103 1.22379 0.93076 0.97465 0.97993 0.88847 1.21732 0.88368 0.93274 0.96386 1.58819 1.24277 1.64136 1.37815 1.05309 0.74837 0.75338 0.73981 1.93531 1.65990 1.53908 1.82036 1.93530 1.35079 1.82900 1.83794 1.30454 1.11770 1.14885 1.14789 1.18969 0.98874 0.95564 0.87718 1.20968 1.42435 0.97742 0.94774 0.92084 1.25068 0.95503 0.95278 0.98609 1.69950 1.47354 1.14881 1.20754 0.86520 0.79662 0.80524 0.80504 1.20086 1.21067 1.20069 1.22640 0.91718 0.97687 0.91278 1.22965 0.94489 0.85751 0.93443 0.90688 1.86517 1.25752 1.49739 1.73641 0.92300 0.92876 0.92708 0.91877 0.90496 0.91328 0.91229 0.86247 0.86357 0.94922 0.94885 0.92484 0.90735 0.90340 0.77296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.76 37.16 0.36 -0.91 16 2 C -0.11 -0.93 4.92 -26.73 -0.13 -1.07 16 3 C -0.09 -0.84 2.91 -88.79 -0.26 -1.09 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.13 1.59 5.64 -3.07 -0.02 1.58 16 6 N -1.01 -14.61 3.62 -111.42 -0.40 -15.01 16 7 S 2.61 49.35 5.65 -107.50 -0.61 48.74 16 8 O -0.96 -20.61 17.60 -57.54 -1.01 -21.62 16 9 O -0.96 -20.87 17.60 -57.54 -1.01 -21.89 16 10 C -0.59 -11.74 6.12 37.16 0.23 -11.51 16 11 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 16 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 C 0.09 1.04 6.62 -2.53 -0.02 1.02 16 21 C 0.09 0.83 4.16 -24.58 -0.10 0.73 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 23 O -0.55 -5.24 12.22 -35.23 -0.43 -5.67 16 24 H 0.06 0.51 7.49 -51.93 -0.39 0.12 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.80 7.44 -51.93 -0.39 0.41 16 29 H 0.07 0.86 7.76 -51.93 -0.40 0.46 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.12 2.22 8.14 -51.92 -0.42 1.80 16 32 H 0.12 2.14 8.14 -51.93 -0.42 1.72 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.38 2.21 9.12 45.56 0.42 2.63 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -35.78 326.07 -8.70 -44.48 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.38 Total: -0.26 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -0.49 Total: -24.03 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.33 Total: -41.08 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.46 Total: -49.17 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.61 Total: 48.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.78 -8.70 -44.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340599927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.695 kcal (2) G-P(sol) polarization free energy of solvation -35.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds