Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09003 * 110.63854 * 303.30705 * 3 2 1 5 5 C 1.54316 * 110.72327 * 66.45243 * 3 2 1 6 6 N 1.47026 * 107.27365 * 140.55544 * 5 3 2 7 7 S 1.65595 * 125.65010 * 180.79414 * 6 5 3 8 8 O 1.42099 * 104.27801 * 206.07396 * 7 6 5 9 9 O 1.42095 * 104.27940 * 333.93106 * 7 6 5 10 10 C 1.81400 * 104.44931 * 90.00365 * 7 6 5 11 11 C 1.53000 * 109.47165 * 180.02562 * 10 7 6 12 12 C 1.50703 * 109.47162 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00044 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00082 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99946 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00291 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46761 * 60.00147 * 16 14 12 18 18 H 1.48497 * 109.47223 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46757 * 300.00579 * 16 14 12 20 20 C 1.47425 * 108.70074 * 1.05989 * 6 5 3 21 21 C 1.54910 * 104.83231 * 335.87083 * 20 6 5 22 22 H 1.09002 * 111.00267 * 155.08153 * 21 20 6 23 23 O 1.42893 * 111.04029 * 278.91915 * 21 20 6 24 24 H 1.09002 * 109.46917 * 300.00024 * 1 2 3 25 25 H 1.08996 * 109.47245 * 59.99761 * 1 2 3 26 26 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47122 * 239.99465 * 2 1 3 28 28 H 1.09000 * 109.46911 * 119.99862 * 2 1 3 29 29 H 1.09004 * 109.88447 * 21.14413 * 5 3 2 30 30 H 1.08996 * 110.01243 * 260.04843 * 5 3 2 31 31 H 1.09010 * 109.46913 * 299.99498 * 10 7 6 32 32 H 1.08996 * 109.47355 * 59.99732 * 10 7 6 33 33 H 1.08999 * 109.47064 * 299.99930 * 11 10 7 34 34 H 1.09000 * 109.46865 * 59.99855 * 11 10 7 35 35 H 0.96997 * 119.99982 * 179.97438 * 15 14 12 36 36 H 1.09001 * 110.36478 * 94.71036 * 20 6 5 37 37 H 1.08998 * 110.36859 * 217.03414 * 20 6 5 38 38 H 0.96701 * 114.00206 * 292.21720 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6399 1.9914 -0.8525 5 6 1.6784 2.1495 1.3231 6 7 2.8295 2.9819 1.7021 7 16 2.9346 3.9227 3.0608 8 8 3.8554 4.9459 2.7082 9 8 1.5844 4.2303 3.3794 10 6 3.6510 2.8266 4.3161 11 6 3.7995 3.5892 5.6342 12 6 4.3941 2.6784 6.6772 13 1 4.6417 1.6578 6.4251 14 6 4.6230 3.1482 7.9531 15 7 4.3219 4.3912 8.2600 16 14 5.3607 2.0195 9.2459 17 1 6.6947 1.5515 8.7912 18 1 5.5047 2.7596 10.5252 19 1 4.4685 0.8498 9.4488 20 6 3.8722 2.8452 0.6689 21 6 3.5912 1.4762 0.0006 22 1 3.9830 1.4502 -1.0163 23 8 4.1265 0.4052 0.7804 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.4856 1.4084 2.0989 30 1 0.7979 2.7764 1.1825 31 1 2.9960 1.9681 4.4653 32 1 4.6300 2.4830 3.9824 33 1 4.4542 4.4479 5.4853 34 1 2.8202 3.9324 5.9677 35 1 4.4826 4.7216 9.1577 36 1 3.7888 3.6488 -0.0628 37 1 4.8618 2.8482 1.1259 38 1 5.0929 0.3852 0.8103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340599927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = -163.925541 kcal Electronic energy + Delta-G solvation = -20460.376885 eV Core-core repulsion = 17235.261055 eV Total energy + Delta-G solvation = -3225.115830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28059 -38.24087 -37.08560 -36.24634 -35.92159 -34.78156 -33.15617 -30.11256 -29.00428 -27.61478 -24.82479 -23.53276 -22.68731 -20.94954 -20.03595 -19.20199 -18.47959 -18.26110 -17.20876 -16.97162 -16.55743 -16.11028 -15.67527 -15.39294 -15.11547 -14.76463 -14.48204 -14.24027 -13.78794 -13.76239 -13.42689 -13.28557 -13.18263 -13.06685 -12.94125 -12.91300 -12.82752 -12.48989 -12.26896 -12.19548 -11.85132 -11.73404 -11.51278 -11.29230 -11.18686 -10.89301 -10.66055 -9.87183 -8.27843 -6.42644 -0.77933 1.39450 1.43362 1.51692 1.71506 2.36845 2.79651 3.00237 3.05242 3.37876 3.45961 3.72138 3.93922 3.98301 4.08379 4.27935 4.38403 4.53351 4.54873 4.62034 4.68623 4.70261 4.81299 4.93701 4.98989 5.05592 5.19453 5.21525 5.24052 5.27413 5.40296 5.49477 5.60560 5.65446 6.03558 6.70198 6.99517 7.27651 8.84349 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022354 B = 0.004760 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.247101 B = 5880.705829 C = 6282.378159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.085 4.085 4 H 0.116 0.884 5 C 0.116 3.884 6 N -1.010 6.010 7 S 2.632 3.368 8 O -0.991 6.991 9 O -0.995 6.995 10 C -0.584 4.584 11 C 0.021 3.979 12 C -0.542 4.542 13 H 0.074 0.926 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.264 1.264 20 C 0.077 3.923 21 C 0.104 3.896 22 H 0.113 0.887 23 O -0.569 6.569 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.007 0.993 34 H 0.005 0.995 35 H 0.268 0.732 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -10.384 -20.892 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.139 4.139 3 C -0.105 4.105 4 H 0.134 0.866 5 C -0.009 4.009 6 N -0.849 5.849 7 S 2.731 3.269 8 O -0.981 6.981 9 O -0.986 6.986 10 C -0.716 4.716 11 C -0.018 4.018 12 C -0.580 4.580 13 H 0.092 0.908 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.186 1.186 18 H -0.208 1.208 19 H -0.189 1.189 20 C -0.048 4.048 21 C 0.044 3.956 22 H 0.131 0.869 23 O -0.377 6.377 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.157 0.843 33 H 0.026 0.974 34 H 0.023 0.977 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -2.914 -9.400 -20.563 22.796 hybrid contribution 1.023 -0.304 1.308 1.688 sum -1.890 -9.704 -19.254 21.644 Atomic orbital electron populations 1.21866 0.95626 1.02084 1.02006 1.21286 0.95513 0.94174 1.02901 1.22464 0.93851 0.97575 0.96611 0.86618 1.22007 0.87590 0.93053 0.98233 1.58395 1.26075 1.63836 1.36574 1.04164 0.73498 0.75031 0.74254 1.93487 1.66618 1.55421 1.82586 1.93480 1.36570 1.83685 1.84823 1.30353 1.13668 1.15006 1.12576 1.18823 0.96625 0.95455 0.90858 1.21461 1.42387 0.98558 0.95632 0.90805 1.26133 0.95813 0.96890 1.01281 1.70099 1.48675 1.17089 1.21496 0.85338 0.79268 0.78349 0.77135 1.18632 1.20755 1.18872 1.23091 0.90946 1.00028 0.90729 1.23021 0.94005 0.83922 0.94696 0.86919 1.86491 1.27396 1.49749 1.74037 0.93560 0.91645 0.92220 0.90292 0.92383 0.91989 0.91554 0.84861 0.84262 0.97427 0.97696 0.92298 0.89427 0.89858 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.76 71.98 0.70 -1.54 16 2 C -0.10 -1.51 4.92 30.59 0.15 -1.36 16 3 C -0.09 -1.35 2.91 -9.61 -0.03 -1.37 16 4 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 5 C 0.12 2.75 5.64 86.73 0.49 3.24 16 6 N -1.01 -27.98 3.62 -506.43 -1.83 -29.81 16 7 S 2.63 100.96 5.65 -56.49 -0.32 100.64 16 8 O -0.99 -42.91 17.60 -127.65 -2.25 -45.16 16 9 O -1.00 -44.36 17.60 -127.65 -2.25 -46.61 16 10 C -0.58 -23.63 6.12 71.98 0.44 -23.19 16 11 C 0.02 1.16 4.98 29.85 0.15 1.30 16 12 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 13 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 14 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 15 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 16 Si 0.98 43.82 29.54 68.60 2.03 45.85 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 20 C 0.08 1.54 6.62 86.86 0.58 2.11 16 21 C 0.10 1.47 4.16 31.99 0.13 1.61 16 22 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 23 O -0.57 -9.12 12.22 -148.98 -1.82 -10.94 16 24 H 0.05 0.76 7.49 -2.39 -0.02 0.74 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.10 7.44 -2.39 -0.02 1.09 16 29 H 0.06 1.53 7.76 -2.38 -0.02 1.51 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.13 4.95 8.14 -2.39 -0.02 4.93 16 32 H 0.14 4.96 8.14 -2.39 -0.02 4.94 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.39 3.41 9.12 -74.06 -0.68 2.74 16 Total: -1.00 -78.66 326.07 -2.48 -81.14 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.37 Total: 11.74 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 3.31 Total: -49.47 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -1.55 Total: -87.19 kcal Atomic # 8 Polarization: -96.40 SS G_CDS: -6.31 Total: -102.71 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 100.96 SS G_CDS: -0.32 Total: 100.64 kcal Total: -78.66 -2.48 -81.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340599927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.781 kcal (2) G-P(sol) polarization free energy of solvation -78.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds