Wall clock time and date at job start Mon Mar 30 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 H 1.09008 * 110.91331 * 57.44694 * 3 2 1 5 5 C 1.54908 * 111.00368 * 293.54646 * 3 2 1 6 6 N 1.47425 * 104.92961 * 204.85960 * 5 3 2 7 7 S 1.65600 * 125.65067 * 204.15751 * 6 5 3 8 8 O 1.42100 * 104.27608 * 206.07146 * 7 6 5 9 9 O 1.42107 * 104.27253 * 333.92420 * 7 6 5 10 10 C 1.81391 * 104.45184 * 89.99607 * 7 6 5 11 11 C 1.52997 * 109.47209 * 180.02562 * 10 7 6 12 12 C 1.50700 * 109.47471 * 180.02562 * 11 10 7 13 13 H 1.08006 * 119.99596 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00403 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99851 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00197 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46985 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46911 * 120.00236 * 16 14 12 19 19 H 1.48501 * 109.47314 * 240.00278 * 16 14 12 20 20 C 1.47290 * 108.55742 * 24.15407 * 6 5 3 21 21 C 1.54325 * 107.30599 * 358.92448 * 20 6 5 22 22 H 1.09002 * 110.72180 * 219.45147 * 21 20 6 23 23 O 1.42901 * 110.86965 * 96.25484 * 21 20 6 24 24 H 1.08998 * 109.46915 * 60.00403 * 1 2 3 25 25 H 1.08999 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47431 * 299.99824 * 1 2 3 27 27 H 1.08994 * 109.47310 * 239.99649 * 2 1 3 28 28 H 1.09004 * 109.47334 * 119.99616 * 2 1 3 29 29 H 1.09002 * 110.36632 * 323.75356 * 5 3 2 30 30 H 1.08995 * 110.36781 * 85.96593 * 5 3 2 31 31 H 1.08998 * 109.47228 * 300.00401 * 10 7 6 32 32 H 1.09003 * 109.47110 * 60.00464 * 10 7 6 33 33 H 1.09005 * 109.46802 * 300.00055 * 11 10 7 34 34 H 1.08991 * 109.47516 * 59.99858 * 11 10 7 35 35 H 0.97001 * 119.99865 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.85762 * 239.50064 * 20 6 5 37 37 H 1.08995 * 110.00297 * 118.43011 * 20 6 5 38 38 H 0.96693 * 114.00397 * 66.38921 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6531 1.9920 0.8583 5 6 1.6804 2.1585 -1.3257 6 7 2.6865 3.2270 -1.4653 7 16 2.4983 4.6221 -2.3375 8 8 3.8232 4.9973 -2.6885 9 8 1.5436 4.2855 -3.3349 10 6 1.7940 5.8037 -1.1551 11 6 1.5704 7.1484 -1.8497 12 6 0.9859 8.1303 -0.8673 13 1 0.7928 7.8255 0.1507 14 6 0.6977 9.4177 -1.2678 15 7 0.9324 9.7887 -2.5076 16 14 -0.0276 10.6346 -0.0501 17 1 -0.1950 9.9742 1.2694 18 1 0.8854 11.7972 0.0910 19 1 -1.3490 11.0997 -0.5426 20 6 3.8853 2.8450 -0.6995 21 6 3.5906 1.4841 -0.0341 22 1 3.9996 1.4520 0.9758 23 8 4.1081 0.4098 -0.8215 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7468 1.4632 -2.1626 30 1 0.6793 2.5856 -1.2668 31 1 0.8419 5.4235 -0.7850 32 1 2.4819 5.9357 -0.3199 33 1 2.5225 7.5287 -2.2201 34 1 0.8825 7.0162 -2.6847 35 1 0.7299 10.6945 -2.7893 36 1 4.0908 3.5946 0.0648 37 1 4.7412 2.7532 -1.3679 38 1 5.0734 0.3907 -0.8748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340599929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:01 Heat of formation + Delta-G solvation = -135.872828 kcal Electronic energy + Delta-G solvation = -20325.683799 eV Core-core repulsion = 17101.784426 eV Total energy + Delta-G solvation = -3223.899373 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.45953 -36.60634 -35.56840 -35.41778 -33.97998 -33.88694 -31.16774 -29.23018 -28.17840 -25.61627 -23.92612 -22.08447 -21.45393 -20.21713 -18.69091 -17.85651 -17.44428 -16.52716 -15.61576 -15.55741 -15.00006 -14.81821 -14.59015 -14.41888 -14.07359 -13.56710 -13.18511 -13.11951 -12.55674 -12.47367 -12.32756 -11.98042 -11.76505 -11.66229 -11.56673 -11.52538 -11.10516 -10.99968 -10.97060 -10.77281 -10.53431 -10.40738 -10.40122 -10.23583 -9.78303 -9.32876 -8.74400 -8.51954 -6.13713 -4.19404 0.72317 3.04287 3.24255 3.31462 3.34840 3.89410 4.25608 4.27040 4.31506 4.39185 4.62122 4.79936 5.02388 5.05731 5.21503 5.25180 5.26955 5.34136 5.43706 5.59554 5.59948 5.66964 5.68897 5.77265 5.88487 5.92679 6.07855 6.17490 6.27312 6.46714 6.47453 7.28674 7.34600 7.41401 7.79342 8.16145 8.84185 9.45478 10.97391 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.004441 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.830113 B = 6303.056688 C = 6733.008211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.104 4.104 3 C -0.094 4.094 4 H 0.096 0.904 5 C 0.130 3.870 6 N -1.017 6.017 7 S 2.605 3.395 8 O -0.963 6.963 9 O -0.960 6.960 10 C -0.589 4.589 11 C 0.027 3.973 12 C -0.520 4.520 13 H 0.062 0.938 14 C 0.058 3.942 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.091 3.909 21 C 0.098 3.902 22 H 0.076 0.924 23 O -0.555 6.555 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -18.953 7.674 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.114 4.114 4 H 0.114 0.886 5 C 0.004 3.996 6 N -0.853 5.853 7 S 2.705 3.295 8 O -0.953 6.953 9 O -0.951 6.951 10 C -0.722 4.722 11 C -0.012 4.012 12 C -0.559 4.559 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.035 4.035 21 C 0.037 3.963 22 H 0.093 0.907 23 O -0.360 6.360 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 3.483 -18.789 6.484 20.179 hybrid contribution 0.019 1.149 1.325 1.753 sum 3.501 -17.641 7.809 19.607 Atomic orbital electron populations 1.21855 0.95841 1.01692 1.02159 1.21276 0.95337 0.94674 1.02950 1.22567 0.92789 0.97505 0.98542 0.88582 1.21993 0.91345 0.89144 0.97093 1.58922 1.22925 1.34995 1.68500 1.05340 0.74785 0.73506 0.75878 1.93528 1.37170 1.82631 1.82010 1.93542 1.64103 1.82181 1.55264 1.30493 1.11682 1.14417 1.15614 1.18977 0.98743 0.87100 0.96374 1.21036 1.42710 0.95456 0.96713 0.92005 1.25073 0.95534 0.98429 0.95455 1.69969 1.47565 1.18993 1.16307 0.86408 0.78860 0.80931 0.81050 1.19661 1.20782 1.20764 1.22460 0.88551 0.97049 0.95427 1.22798 0.94993 0.85227 0.93269 0.90664 1.86507 1.26077 1.49785 1.73677 0.92302 0.92743 0.92723 0.90654 0.91884 0.91027 0.90643 0.86277 0.86335 0.94850 0.94814 0.92562 0.90943 0.90661 0.77376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.76 37.16 0.36 -0.91 16 2 C -0.10 -0.90 5.06 -26.73 -0.14 -1.03 16 3 C -0.09 -0.90 3.00 -88.47 -0.27 -1.16 16 4 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 5 C 0.13 1.61 5.53 -2.53 -0.01 1.60 16 6 N -1.02 -14.59 3.63 -111.22 -0.40 -14.99 16 7 S 2.61 48.84 5.65 -107.50 -0.61 48.24 16 8 O -0.96 -20.58 17.61 -57.54 -1.01 -21.60 16 9 O -0.96 -20.74 17.61 -57.54 -1.01 -21.75 16 10 C -0.59 -11.45 6.12 37.16 0.23 -11.22 16 11 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 12 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.09 1.04 6.69 -2.92 -0.02 1.02 16 21 C 0.10 0.87 4.08 -24.90 -0.10 0.77 16 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 23 O -0.55 -4.96 12.10 -35.23 -0.43 -5.39 16 24 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.74 7.42 -51.93 -0.39 0.35 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 30 H 0.08 0.89 8.06 -51.93 -0.42 0.48 16 31 H 0.12 2.09 8.14 -51.93 -0.42 1.66 16 32 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 38 H 0.38 1.90 9.12 45.56 0.42 2.31 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -35.70 326.14 -8.71 -44.40 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.38 Total: -0.57 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -0.50 Total: -23.59 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.33 Total: -40.83 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -2.45 Total: -48.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 48.84 SS G_CDS: -0.61 Total: 48.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.70 -8.71 -44.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340599929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.468 kcal (2) G-P(sol) polarization free energy of solvation -35.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds