Wall clock time and date at job start Mon Mar 30 2020 01:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 H 1.09008 * 110.91331 * 57.44694 * 3 2 1 5 5 C 1.54908 * 111.00368 * 293.54646 * 3 2 1 6 6 N 1.47425 * 104.92961 * 204.85960 * 5 3 2 7 7 S 1.65600 * 125.65067 * 204.15751 * 6 5 3 8 8 O 1.42100 * 104.27608 * 206.07146 * 7 6 5 9 9 O 1.42107 * 104.27253 * 333.92420 * 7 6 5 10 10 C 1.81391 * 104.45184 * 89.99607 * 7 6 5 11 11 C 1.52997 * 109.47209 * 180.02562 * 10 7 6 12 12 C 1.50700 * 109.47471 * 180.02562 * 11 10 7 13 13 H 1.08006 * 119.99596 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00403 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99851 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00197 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46985 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46911 * 120.00236 * 16 14 12 19 19 H 1.48501 * 109.47314 * 240.00278 * 16 14 12 20 20 C 1.47290 * 108.55742 * 24.15407 * 6 5 3 21 21 C 1.54325 * 107.30599 * 358.92448 * 20 6 5 22 22 H 1.09002 * 110.72180 * 219.45147 * 21 20 6 23 23 O 1.42901 * 110.86965 * 96.25484 * 21 20 6 24 24 H 1.08998 * 109.46915 * 60.00403 * 1 2 3 25 25 H 1.08999 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47431 * 299.99824 * 1 2 3 27 27 H 1.08994 * 109.47310 * 239.99649 * 2 1 3 28 28 H 1.09004 * 109.47334 * 119.99616 * 2 1 3 29 29 H 1.09002 * 110.36632 * 323.75356 * 5 3 2 30 30 H 1.08995 * 110.36781 * 85.96593 * 5 3 2 31 31 H 1.08998 * 109.47228 * 300.00401 * 10 7 6 32 32 H 1.09003 * 109.47110 * 60.00464 * 10 7 6 33 33 H 1.09005 * 109.46802 * 300.00055 * 11 10 7 34 34 H 1.08991 * 109.47516 * 59.99858 * 11 10 7 35 35 H 0.97001 * 119.99865 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.85762 * 239.50064 * 20 6 5 37 37 H 1.08995 * 110.00297 * 118.43011 * 20 6 5 38 38 H 0.96693 * 114.00397 * 66.38921 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6531 1.9920 0.8583 5 6 1.6804 2.1585 -1.3257 6 7 2.6865 3.2270 -1.4653 7 16 2.4983 4.6221 -2.3375 8 8 3.8232 4.9973 -2.6885 9 8 1.5436 4.2855 -3.3349 10 6 1.7940 5.8037 -1.1551 11 6 1.5704 7.1484 -1.8497 12 6 0.9859 8.1303 -0.8673 13 1 0.7928 7.8255 0.1507 14 6 0.6977 9.4177 -1.2678 15 7 0.9324 9.7887 -2.5076 16 14 -0.0276 10.6346 -0.0501 17 1 -0.1950 9.9742 1.2694 18 1 0.8854 11.7972 0.0910 19 1 -1.3490 11.0997 -0.5426 20 6 3.8853 2.8450 -0.6995 21 6 3.5906 1.4841 -0.0341 22 1 3.9996 1.4520 0.9758 23 8 4.1081 0.4098 -0.8215 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7468 1.4632 -2.1626 30 1 0.6793 2.5856 -1.2668 31 1 0.8419 5.4235 -0.7850 32 1 2.4819 5.9357 -0.3199 33 1 2.5225 7.5287 -2.2201 34 1 0.8825 7.0162 -2.6847 35 1 0.7299 10.6945 -2.7893 36 1 4.0908 3.5946 0.0648 37 1 4.7412 2.7532 -1.3679 38 1 5.0734 0.3907 -0.8748 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340599929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:01 Heat of formation + Delta-G solvation = -164.533360 kcal Electronic energy + Delta-G solvation = -20326.926613 eV Core-core repulsion = 17101.784426 eV Total energy + Delta-G solvation = -3225.142187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27486 -38.23744 -37.07572 -36.31051 -35.91921 -34.76250 -33.15171 -30.06968 -29.02812 -27.61666 -24.84442 -23.54928 -22.68938 -20.96960 -20.03227 -19.17832 -18.60784 -18.20607 -17.16685 -16.98585 -16.55006 -15.84181 -15.69738 -15.45815 -15.15929 -14.94390 -14.48609 -14.18738 -13.87595 -13.75277 -13.36415 -13.27781 -13.22247 -13.15892 -12.97377 -12.94243 -12.80344 -12.46298 -12.28330 -12.12737 -11.78722 -11.69599 -11.50845 -11.24484 -11.16432 -10.92908 -10.67166 -9.95085 -8.27485 -6.42047 -0.79283 1.40671 1.41432 1.54792 1.70982 2.37231 2.81482 3.00376 3.06210 3.35701 3.43803 3.72742 3.94536 3.97995 4.11201 4.31111 4.38480 4.43896 4.54430 4.57450 4.65941 4.71486 4.83305 4.97950 4.98754 5.06729 5.17824 5.22687 5.24766 5.27918 5.40273 5.46940 5.61341 5.66581 6.03758 6.71792 6.95934 7.28530 8.85157 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.004441 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.830113 B = 6303.056688 C = 6733.008211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.098 4.098 3 C -0.090 4.090 4 H 0.115 0.885 5 C 0.118 3.882 6 N -1.012 6.012 7 S 2.628 3.372 8 O -0.994 6.994 9 O -0.996 6.996 10 C -0.583 4.583 11 C 0.019 3.981 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.254 1.254 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.076 3.924 21 C 0.107 3.893 22 H 0.111 0.889 23 O -0.570 6.570 24 H 0.046 0.954 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.006 0.994 34 H 0.005 0.995 35 H 0.268 0.732 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 -20.016 10.706 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 C -0.110 4.110 4 H 0.133 0.867 5 C -0.007 4.007 6 N -0.851 5.851 7 S 2.727 3.273 8 O -0.984 6.984 9 O -0.986 6.986 10 C -0.715 4.715 11 C -0.020 4.020 12 C -0.577 4.577 13 H 0.095 0.905 14 C -0.203 4.203 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.178 1.178 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.049 4.049 21 C 0.046 3.954 22 H 0.129 0.871 23 O -0.379 6.379 24 H 0.066 0.934 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.025 0.975 34 H 0.024 0.976 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.423 -19.860 9.519 22.288 hybrid contribution 0.087 1.373 0.348 1.420 sum 3.509 -18.487 9.867 21.247 Atomic orbital electron populations 1.21866 0.95629 1.02149 1.01999 1.21220 0.95480 0.93992 1.02927 1.22640 0.93544 0.97747 0.97088 0.86743 1.22241 0.91086 0.88539 0.98786 1.58487 1.24736 1.33507 1.68419 1.04300 0.73467 0.73951 0.75559 1.93479 1.38454 1.83709 1.82784 1.93489 1.65019 1.82930 1.57177 1.30354 1.13764 1.11377 1.16023 1.18841 0.96580 0.90505 0.96049 1.21535 1.42417 0.96137 0.97623 0.90477 1.26141 0.95893 1.00821 0.97396 1.70116 1.48981 1.19704 1.18685 0.85231 0.77821 0.78054 0.78929 1.17797 1.20329 1.20385 1.22889 0.86995 0.99389 0.95637 1.22841 0.94583 0.83512 0.94425 0.87099 1.86479 1.27841 1.49569 1.73965 0.93447 0.92062 0.91879 0.92149 0.90342 0.92224 0.90410 0.84059 0.83840 0.97546 0.97650 0.92363 0.89045 0.91197 0.75450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.76 71.98 0.70 -1.54 16 2 C -0.10 -1.44 5.06 30.59 0.15 -1.29 16 3 C -0.09 -1.46 3.00 -9.40 -0.03 -1.49 16 4 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 5 C 0.12 2.80 5.53 86.85 0.48 3.28 16 6 N -1.01 -27.88 3.63 -505.79 -1.84 -29.72 16 7 S 2.63 99.44 5.65 -56.49 -0.32 99.12 16 8 O -0.99 -43.27 17.61 -127.65 -2.25 -45.52 16 9 O -1.00 -44.27 17.61 -127.65 -2.25 -46.51 16 10 C -0.58 -22.35 6.12 71.98 0.44 -21.91 16 11 C 0.02 1.02 4.98 29.85 0.15 1.17 16 12 C -0.54 -29.88 9.11 25.60 0.23 -29.64 16 13 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 14 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 15 N -0.94 -57.19 13.29 21.45 0.28 -56.90 16 16 Si 0.98 43.13 29.54 68.60 2.03 45.15 16 17 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 20 C 0.08 1.55 6.69 86.68 0.58 2.13 16 21 C 0.11 1.55 4.08 31.78 0.13 1.67 16 22 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 23 O -0.57 -8.75 12.10 -148.98 -1.80 -10.55 16 24 H 0.05 0.77 7.45 -2.39 -0.02 0.75 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 1.08 7.42 -2.39 -0.02 1.06 16 28 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.06 1.55 8.00 -2.39 -0.02 1.53 16 30 H 0.08 1.77 8.06 -2.39 -0.02 1.75 16 31 H 0.14 4.74 8.14 -2.39 -0.02 4.72 16 32 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 33 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.07 1.50 8.07 -2.39 -0.02 1.48 16 38 H 0.40 2.96 9.12 -74.06 -0.68 2.29 16 Total: -1.00 -78.61 326.14 -2.47 -81.08 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.36 Total: 11.24 kcal Atomic # 6 Polarization: -50.69 SS G_CDS: 3.30 Total: -47.39 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -1.55 Total: -86.62 kcal Atomic # 8 Polarization: -96.29 SS G_CDS: -6.30 Total: -102.59 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 99.44 SS G_CDS: -0.32 Total: 99.12 kcal Total: -78.61 -2.47 -81.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340599929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.452 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds