Wall clock time and date at job start Mon Mar 30 2020 02:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.98597 * 2 1 4 4 O 1.43743 * 109.87735 * 238.91446 * 2 1 3 5 5 C 1.44379 * 106.97780 * 267.08989 * 4 2 1 6 6 C 1.55350 * 103.50037 * 319.90767 * 5 4 2 7 7 C 1.54098 * 109.87836 * 121.08366 * 2 1 3 8 8 C 1.53003 * 110.48839 * 236.20494 * 7 2 1 9 9 N 1.46504 * 110.48988 * 358.71943 * 7 2 1 10 10 S 1.65599 * 120.00318 * 195.77761 * 9 7 2 11 11 O 1.42101 * 104.27401 * 312.21010 * 10 9 7 12 12 O 1.42102 * 104.27908 * 184.35380 * 10 9 7 13 13 C 1.81398 * 104.44866 * 68.27964 * 10 9 7 14 14 C 1.52998 * 109.47173 * 171.98691 * 13 10 9 15 15 C 1.50696 * 109.47491 * 180.02562 * 14 13 10 16 16 H 1.08003 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00118 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00045 * 359.72726 * 17 15 14 19 19 Si 1.86803 * 119.99810 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46820 * 90.00276 * 19 17 15 21 21 H 1.48496 * 109.47273 * 210.00246 * 19 17 15 22 22 H 1.48500 * 109.47455 * 330.00714 * 19 17 15 23 23 H 1.08987 * 109.47142 * 298.91400 * 1 2 3 24 24 H 1.09002 * 109.46944 * 58.91966 * 1 2 3 25 25 H 1.08997 * 109.46703 * 178.91576 * 1 2 3 26 26 H 1.09000 * 110.61924 * 78.44259 * 5 4 2 27 27 H 1.09001 * 110.62094 * 201.44670 * 5 4 2 28 28 H 1.09001 * 110.96169 * 278.92562 * 6 5 4 29 29 H 1.09001 * 111.01004 * 155.20680 * 6 5 4 30 30 H 1.08999 * 109.46989 * 188.76021 * 8 7 2 31 31 H 1.08998 * 109.46917 * 308.75807 * 8 7 2 32 32 H 1.09003 * 109.46661 * 68.75740 * 8 7 2 33 33 H 0.97003 * 119.99226 * 15.77474 * 9 7 2 34 34 H 1.09002 * 109.47270 * 51.98544 * 13 10 9 35 35 H 1.08996 * 109.46935 * 291.98756 * 13 10 9 36 36 H 1.09002 * 109.47142 * 59.99775 * 14 13 10 37 37 H 1.09008 * 109.47227 * 300.00280 * 14 13 10 38 38 H 0.97004 * 119.99837 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 2.2281 -2.0714 -0.7647 6 6 2.8347 -1.9525 0.6605 7 6 2.0540 -0.7482 1.2411 8 6 2.9858 0.1518 2.0552 9 7 0.9382 -1.2118 2.0695 10 16 1.2094 -1.6905 3.6314 11 8 2.3270 -2.5635 3.5412 12 8 -0.0545 -2.1623 4.0778 13 6 1.6624 -0.1641 4.5005 14 6 1.7459 -0.4385 6.0033 15 6 2.1216 0.8297 6.7255 16 1 2.2850 1.7403 6.1681 17 6 2.2568 0.8275 8.0976 18 7 2.0526 -0.2799 8.7767 19 14 2.7232 2.3995 8.9926 20 1 1.4917 3.1417 9.3638 21 1 3.4869 2.0619 10.2206 22 1 3.5617 3.2445 8.1048 23 1 -0.3633 0.4968 0.8995 24 1 -0.3633 0.5305 -0.8802 25 1 -0.3632 -1.0275 -0.0194 26 1 1.2814 -2.6108 -0.7356 27 1 2.9296 -2.5612 -1.4401 28 1 3.9022 -1.7376 0.6132 29 1 2.6462 -2.8550 1.2420 30 1 3.4670 -0.4359 2.8370 31 1 3.7462 0.5755 1.3992 32 1 2.4080 0.9569 2.5092 33 1 0.0404 -1.2382 1.7030 34 1 0.9074 0.5992 4.3118 35 1 2.6301 0.1853 4.1406 36 1 2.5008 -1.2018 6.1920 37 1 0.7781 -0.7880 6.3632 38 1 2.1481 -0.2815 9.7420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343975230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:24 Heat of formation + Delta-G solvation = -115.710075 kcal Electronic energy + Delta-G solvation = -20984.305920 eV Core-core repulsion = 17761.280870 eV Total energy + Delta-G solvation = -3223.025050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36673 -36.68043 -35.61294 -35.38435 -33.97353 -31.64429 -31.32924 -30.27154 -28.90874 -25.74660 -24.53668 -22.07490 -21.60722 -20.43949 -18.79198 -17.74222 -16.93438 -16.81088 -16.21436 -15.43740 -15.28953 -14.69078 -14.56444 -14.26795 -13.69964 -13.60831 -13.54890 -12.98311 -12.70579 -12.47148 -12.24890 -12.00851 -11.72443 -11.62867 -11.55280 -11.45477 -11.38204 -11.11978 -11.08860 -10.91652 -10.71619 -10.41053 -10.24213 -9.86997 -9.78178 -9.50169 -9.07398 -8.52034 -6.14334 -4.20053 0.77445 3.05325 3.24429 3.30928 3.33245 3.70910 4.11518 4.32592 4.40314 4.50073 4.56091 4.66553 4.92382 5.04588 5.06360 5.09438 5.21017 5.34906 5.37977 5.46713 5.55483 5.60196 5.73437 5.76201 5.79301 5.91858 5.94954 6.08515 6.16998 6.48714 6.68649 7.04216 7.27762 7.34843 7.78457 8.15536 8.83438 9.44929 10.96713 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.004877 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.529881 B = 5740.225325 C = 6076.095233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.077 3.923 3 H 0.105 0.895 4 O -0.371 6.371 5 C 0.045 3.955 6 C -0.169 4.169 7 C 0.156 3.844 8 C -0.194 4.194 9 N -1.119 6.119 10 S 2.589 3.411 11 O -0.966 6.966 12 O -0.968 6.968 13 C -0.604 4.604 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.414 0.586 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.030 0.970 37 H 0.034 0.966 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.395 0.422 -18.122 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.018 3.982 3 H 0.123 0.877 4 O -0.290 6.290 5 C -0.032 4.032 6 C -0.208 4.208 7 C 0.066 3.934 8 C -0.251 4.251 9 N -0.879 5.879 10 S 2.687 3.313 11 O -0.956 6.956 12 O -0.958 6.958 13 C -0.737 4.737 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.252 0.748 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.283 -0.489 -17.794 17.803 hybrid contribution -0.140 1.352 0.648 1.506 sum -0.423 0.863 -17.146 17.173 Atomic orbital electron populations 1.22280 0.95595 1.02693 1.03071 1.22975 0.94288 0.96922 0.84014 0.87722 1.88910 1.86043 1.21124 1.32910 1.23643 0.99946 0.84038 0.95544 1.23822 1.00694 0.99817 0.96428 1.21289 0.86426 0.93932 0.91712 1.22894 1.00174 1.00406 1.01668 1.56201 1.16132 1.84308 1.31233 1.05670 0.74433 0.78131 0.73066 1.93525 1.54283 1.62728 1.85096 1.93555 1.42337 1.79763 1.80141 1.30996 1.11558 1.18410 1.12769 1.18959 0.98890 0.99264 0.83941 1.20992 1.48264 0.94985 0.91705 0.92045 1.25063 0.95136 0.96580 0.97661 1.69953 1.48582 1.26646 1.07652 0.86479 0.78603 0.83003 0.79251 1.20480 1.21011 1.19758 0.90558 0.91384 0.91880 0.92197 0.88853 0.89334 0.87961 0.90043 0.89536 0.89802 0.74805 0.86118 0.84886 0.95134 0.94767 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.13 37.16 0.30 -1.29 16 2 C 0.08 0.78 3.76 -26.15 -0.10 0.68 16 3 H 0.11 0.92 7.69 -51.93 -0.40 0.52 16 4 O -0.37 -4.17 11.19 -35.23 -0.39 -4.57 16 5 C 0.04 0.45 7.67 38.40 0.29 0.74 16 6 C -0.17 -1.93 6.07 -24.53 -0.15 -2.08 16 7 C 0.16 1.78 0.99 -130.29 -0.13 1.65 16 8 C -0.19 -2.15 6.30 37.16 0.23 -1.92 16 9 N -1.12 -14.21 5.03 1.77 0.01 -14.21 16 10 S 2.59 45.14 4.98 -107.50 -0.54 44.61 16 11 O -0.97 -18.81 15.47 -57.54 -0.89 -19.70 16 12 O -0.97 -20.11 18.08 -57.54 -1.04 -21.16 16 13 C -0.60 -11.13 4.54 37.16 0.17 -10.96 16 14 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 15 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 19 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H 0.08 0.63 7.55 -51.94 -0.39 0.23 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.56 7.12 -51.93 -0.37 0.19 16 26 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 29 H 0.10 1.34 6.69 -51.93 -0.35 0.99 16 30 H 0.08 1.04 5.67 -51.93 -0.29 0.74 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.87 6.69 -51.93 -0.35 0.52 16 33 H 0.41 4.56 5.62 -34.48 -0.19 4.36 16 34 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 35 H 0.13 2.18 4.58 -51.93 -0.24 1.95 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.92 8.14 -51.92 -0.42 0.49 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -33.89 308.40 -7.90 -41.79 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.49 Total: 3.67 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 0.07 Total: -25.47 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.75 Total: -39.73 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.32 Total: -45.42 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 45.14 SS G_CDS: -0.54 Total: 44.61 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.89 -7.90 -41.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343975230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.918 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds