Wall clock time and date at job start Mon Mar 30 2020 02:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.98597 * 2 1 4 4 O 1.43743 * 109.87735 * 238.91446 * 2 1 3 5 5 C 1.44379 * 106.97780 * 267.08989 * 4 2 1 6 6 C 1.55350 * 103.50037 * 319.90767 * 5 4 2 7 7 C 1.54098 * 109.87836 * 121.08366 * 2 1 3 8 8 C 1.53003 * 110.48839 * 236.20494 * 7 2 1 9 9 N 1.46504 * 110.48988 * 358.71943 * 7 2 1 10 10 S 1.65599 * 120.00318 * 195.77761 * 9 7 2 11 11 O 1.42101 * 104.27401 * 312.21010 * 10 9 7 12 12 O 1.42102 * 104.27908 * 184.35380 * 10 9 7 13 13 C 1.81398 * 104.44866 * 68.27964 * 10 9 7 14 14 C 1.52998 * 109.47173 * 171.98691 * 13 10 9 15 15 C 1.50696 * 109.47491 * 180.02562 * 14 13 10 16 16 H 1.08003 * 119.99685 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00118 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00045 * 359.72726 * 17 15 14 19 19 Si 1.86803 * 119.99810 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46820 * 90.00276 * 19 17 15 21 21 H 1.48496 * 109.47273 * 210.00246 * 19 17 15 22 22 H 1.48500 * 109.47455 * 330.00714 * 19 17 15 23 23 H 1.08987 * 109.47142 * 298.91400 * 1 2 3 24 24 H 1.09002 * 109.46944 * 58.91966 * 1 2 3 25 25 H 1.08997 * 109.46703 * 178.91576 * 1 2 3 26 26 H 1.09000 * 110.61924 * 78.44259 * 5 4 2 27 27 H 1.09001 * 110.62094 * 201.44670 * 5 4 2 28 28 H 1.09001 * 110.96169 * 278.92562 * 6 5 4 29 29 H 1.09001 * 111.01004 * 155.20680 * 6 5 4 30 30 H 1.08999 * 109.46989 * 188.76021 * 8 7 2 31 31 H 1.08998 * 109.46917 * 308.75807 * 8 7 2 32 32 H 1.09003 * 109.46661 * 68.75740 * 8 7 2 33 33 H 0.97003 * 119.99226 * 15.77474 * 9 7 2 34 34 H 1.09002 * 109.47270 * 51.98544 * 13 10 9 35 35 H 1.08996 * 109.46935 * 291.98756 * 13 10 9 36 36 H 1.09002 * 109.47142 * 59.99775 * 14 13 10 37 37 H 1.09008 * 109.47227 * 300.00280 * 14 13 10 38 38 H 0.97004 * 119.99837 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 2.2281 -2.0714 -0.7647 6 6 2.8347 -1.9525 0.6605 7 6 2.0540 -0.7482 1.2411 8 6 2.9858 0.1518 2.0552 9 7 0.9382 -1.2118 2.0695 10 16 1.2094 -1.6905 3.6314 11 8 2.3270 -2.5635 3.5412 12 8 -0.0545 -2.1623 4.0778 13 6 1.6624 -0.1641 4.5005 14 6 1.7459 -0.4385 6.0033 15 6 2.1216 0.8297 6.7255 16 1 2.2850 1.7403 6.1681 17 6 2.2568 0.8275 8.0976 18 7 2.0526 -0.2799 8.7767 19 14 2.7232 2.3995 8.9926 20 1 1.4917 3.1417 9.3638 21 1 3.4869 2.0619 10.2206 22 1 3.5617 3.2445 8.1048 23 1 -0.3633 0.4968 0.8995 24 1 -0.3633 0.5305 -0.8802 25 1 -0.3632 -1.0275 -0.0194 26 1 1.2814 -2.6108 -0.7356 27 1 2.9296 -2.5612 -1.4401 28 1 3.9022 -1.7376 0.6132 29 1 2.6462 -2.8550 1.2420 30 1 3.4670 -0.4359 2.8370 31 1 3.7462 0.5755 1.3992 32 1 2.4080 0.9569 2.5092 33 1 0.0404 -1.2382 1.7030 34 1 0.9074 0.5992 4.3118 35 1 2.6301 0.1853 4.1406 36 1 2.5008 -1.2018 6.1920 37 1 0.7781 -0.7880 6.3632 38 1 2.1481 -0.2815 9.7420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343975230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:24 Heat of formation + Delta-G solvation = -141.880484 kcal Electronic energy + Delta-G solvation = -20985.440754 eV Core-core repulsion = 17761.280870 eV Total energy + Delta-G solvation = -3224.159884 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22159 -38.19007 -37.02486 -36.50697 -35.89786 -33.27302 -32.35699 -31.29367 -29.82828 -27.55110 -25.50483 -23.46737 -22.82726 -21.47435 -20.10016 -19.06934 -18.54513 -17.85982 -17.41233 -16.94851 -16.67104 -16.50572 -15.47708 -15.26929 -15.14921 -14.68662 -14.46757 -14.33309 -13.97319 -13.80400 -13.47254 -13.26770 -13.13059 -13.06166 -12.89564 -12.77487 -12.67127 -12.49329 -12.28879 -12.18069 -12.03394 -11.92173 -11.77120 -11.45678 -11.12814 -10.63481 -10.61171 -10.42571 -8.24822 -6.38632 -0.67069 1.42193 1.43631 1.54714 1.79708 2.38926 2.78371 2.91039 3.09101 3.24373 3.44520 3.68022 3.73300 3.94421 4.09969 4.16012 4.23161 4.26968 4.36890 4.56424 4.61609 4.70109 4.76624 4.82501 4.93854 5.03058 5.08560 5.16274 5.24467 5.28496 5.29825 5.34578 5.69954 5.87827 6.06676 6.08813 6.75532 7.31809 8.87578 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.004877 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.529881 B = 5740.225325 C = 6076.095233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.123 0.877 4 O -0.381 6.381 5 C 0.046 3.954 6 C -0.175 4.175 7 C 0.149 3.851 8 C -0.202 4.202 9 N -1.100 6.100 10 S 2.613 3.387 11 O -0.989 6.989 12 O -1.004 7.004 13 C -0.601 4.601 14 C 0.021 3.979 15 C -0.536 4.536 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.973 3.027 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.256 1.256 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.425 0.575 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.052 2.560 -19.855 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.020 3.980 3 H 0.141 0.859 4 O -0.300 6.300 5 C -0.030 4.030 6 C -0.214 4.214 7 C 0.060 3.940 8 C -0.260 4.260 9 N -0.864 5.864 10 S 2.710 3.290 11 O -0.979 6.979 12 O -0.994 6.994 13 C -0.733 4.733 14 C -0.018 4.018 15 C -0.575 4.575 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.797 3.203 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.179 1.179 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.128 0.872 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.265 0.735 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.051 1.656 -19.541 19.611 hybrid contribution -0.240 0.642 1.095 1.292 sum -0.189 2.298 -18.445 18.589 Atomic orbital electron populations 1.22326 0.94840 1.02894 1.03992 1.23067 0.94955 0.97294 0.82644 0.85909 1.88906 1.86197 1.21526 1.33357 1.23709 1.00470 0.83882 0.94955 1.23851 1.01468 0.98950 0.97136 1.21533 0.85927 0.94329 0.92176 1.22982 1.00882 1.00393 1.01742 1.55751 1.17406 1.84034 1.29190 1.04691 0.73114 0.77431 0.73799 1.93496 1.55078 1.63497 1.85797 1.93501 1.43890 1.80480 1.81569 1.30949 1.13955 1.20057 1.08350 1.18815 0.96311 0.98129 0.88509 1.21521 1.47476 0.96110 0.92351 0.90337 1.26106 0.95062 1.00149 0.98888 1.70107 1.50150 1.29309 1.07998 0.85327 0.78572 0.78612 0.77836 1.19726 1.21059 1.17946 0.89768 0.90390 0.92076 0.91912 0.87162 0.88449 0.89997 0.91955 0.87039 0.88759 0.73472 0.83629 0.82586 0.97827 0.97768 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.13 71.98 0.59 -2.15 16 2 C 0.08 1.36 3.76 30.97 0.12 1.47 16 3 H 0.12 1.68 7.69 -2.39 -0.02 1.66 16 4 O -0.38 -7.50 11.19 -148.98 -1.67 -9.17 16 5 C 0.05 0.83 7.67 72.79 0.56 1.39 16 6 C -0.17 -3.74 6.07 32.02 0.19 -3.55 16 7 C 0.15 3.09 0.99 4.59 0.00 3.09 16 8 C -0.20 -3.99 6.30 71.98 0.45 -3.54 16 9 N -1.10 -26.34 5.03 -148.30 -0.75 -27.09 16 10 S 2.61 91.11 4.98 -56.49 -0.28 90.83 16 11 O -0.99 -39.04 15.47 -127.65 -1.97 -41.02 16 12 O -1.00 -42.41 18.08 -127.65 -2.31 -44.72 16 13 C -0.60 -21.76 4.54 71.98 0.33 -21.43 16 14 C 0.02 1.09 4.98 29.85 0.15 1.24 16 15 C -0.54 -28.99 9.11 25.60 0.23 -28.75 16 16 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 18 N -0.94 -56.62 13.29 21.45 0.28 -56.34 16 19 Si 0.97 42.58 29.54 68.60 2.03 44.61 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 23 H 0.08 1.13 7.55 -2.39 -0.02 1.11 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.06 0.93 7.12 -2.39 -0.02 0.92 16 26 H 0.06 1.09 8.11 -2.39 -0.02 1.07 16 27 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.10 1.88 7.87 -2.39 -0.02 1.86 16 29 H 0.08 2.11 6.69 -2.39 -0.02 2.10 16 30 H 0.06 1.49 5.67 -2.39 -0.01 1.48 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.65 6.69 -2.39 -0.02 1.64 16 33 H 0.42 8.62 5.62 -96.74 -0.54 8.07 16 34 H 0.15 4.48 8.14 -2.39 -0.02 4.46 16 35 H 0.16 4.90 4.58 -2.39 -0.01 4.89 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -73.98 308.40 -1.06 -75.05 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.52 Total: 19.84 kcal Atomic # 6 Polarization: -55.07 SS G_CDS: 3.08 Total: -51.99 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -0.46 Total: -83.43 kcal Atomic # 8 Polarization: -88.96 SS G_CDS: -5.95 Total: -94.91 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 91.11 SS G_CDS: -0.28 Total: 90.83 kcal Total: -73.98 -1.06 -75.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343975230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.835 kcal (2) G-P(sol) polarization free energy of solvation -73.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds