Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.87326 * 2 1 4 4 O 1.43741 * 109.88259 * 238.83845 * 2 1 3 5 5 C 1.44377 * 106.97956 * 214.06315 * 4 2 1 6 6 C 1.55005 * 103.48954 * 40.05646 * 5 4 2 7 7 C 1.54095 * 109.88006 * 121.00484 * 2 1 3 8 8 C 1.52999 * 110.48842 * 2.64437 * 7 2 1 9 9 N 1.46506 * 110.49272 * 240.13228 * 7 2 1 10 10 S 1.65597 * 120.00192 * 161.88444 * 9 7 2 11 11 O 1.42103 * 104.27368 * 175.94882 * 10 9 7 12 12 O 1.42103 * 104.27842 * 303.80298 * 10 9 7 13 13 C 1.81401 * 104.44999 * 59.87739 * 10 9 7 14 14 C 1.53002 * 109.47025 * 173.50961 * 13 10 9 15 15 C 1.50692 * 109.46901 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00340 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46795 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47011 * 119.99801 * 19 17 15 22 22 H 1.48498 * 109.47083 * 240.00067 * 19 17 15 23 23 H 1.09002 * 109.47443 * 298.99720 * 1 2 3 24 24 H 1.09002 * 109.47213 * 178.99289 * 1 2 3 25 25 H 1.09003 * 109.47046 * 58.99385 * 1 2 3 26 26 H 1.09002 * 110.61653 * 281.56076 * 5 4 2 27 27 H 1.08998 * 110.75763 * 158.62219 * 5 4 2 28 28 H 1.08994 * 110.90531 * 204.77945 * 6 5 4 29 29 H 1.08998 * 110.93541 * 81.19275 * 6 5 4 30 30 H 1.09002 * 109.46837 * 60.00272 * 8 7 2 31 31 H 1.09001 * 109.47340 * 179.97438 * 8 7 2 32 32 H 1.08995 * 109.47366 * 300.00318 * 8 7 2 33 33 H 0.96999 * 119.99555 * 341.88449 * 9 7 2 34 34 H 1.08993 * 109.47068 * 293.50830 * 13 10 9 35 35 H 1.08999 * 109.47187 * 53.51370 * 13 10 9 36 36 H 1.09000 * 109.47174 * 300.00255 * 14 13 10 37 37 H 1.08999 * 109.46804 * 60.00175 * 14 13 10 38 38 H 0.97001 * 119.99723 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 3.2379 -1.3651 -0.7629 6 6 2.9195 -1.8905 0.6603 7 6 2.0539 -0.7465 1.2421 8 6 0.8897 -1.3133 2.0570 9 7 2.8710 0.1448 2.0693 10 16 3.1799 -0.2436 3.6492 11 8 4.0621 0.7774 4.0949 12 8 1.8924 -0.4038 4.2288 13 6 4.0422 -1.8372 3.5632 14 6 4.5281 -2.2301 4.9598 15 6 5.2439 -3.5543 4.8885 16 1 5.3428 -4.0644 3.9418 17 6 5.7726 -4.1146 6.0321 18 7 5.6527 -3.4931 7.1849 19 14 6.6606 -5.7557 5.9436 20 1 6.6596 -6.2440 4.5412 21 1 8.0608 -5.5866 6.4085 22 1 5.9666 -6.7413 6.8109 23 1 -0.3634 0.4982 0.8988 24 1 -0.3634 -1.0275 -0.0181 25 1 -0.3633 0.5294 -0.8808 26 1 4.0685 -0.6598 -0.7347 27 1 3.4612 -2.1925 -1.4364 28 1 3.8331 -2.0207 1.2402 29 1 2.3542 -2.8213 0.6144 30 1 0.3192 -2.0082 1.4406 31 1 1.2784 -1.8375 2.9300 32 1 0.2419 -0.4986 2.3805 33 1 3.2311 0.9625 1.6915 34 1 3.3598 -2.5998 3.1882 35 1 4.8967 -1.7523 2.8919 36 1 5.2106 -1.4674 5.3350 37 1 3.6737 -2.3151 5.6312 38 1 6.0243 -3.8875 7.9894 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343975231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -122.291959 kcal Electronic energy + Delta-G solvation = -20977.680463 eV Core-core repulsion = 17754.370001 eV Total energy + Delta-G solvation = -3223.310462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31742 -36.75588 -35.61768 -35.28752 -33.97304 -32.09465 -31.32778 -30.58433 -27.61909 -25.70385 -24.97828 -22.69715 -21.43187 -20.05191 -18.84960 -17.66000 -17.10132 -16.42534 -16.02905 -15.57369 -15.37912 -15.27293 -14.60158 -14.41574 -13.91968 -13.47259 -13.10284 -13.03123 -12.58032 -12.52402 -12.37824 -11.97445 -11.85187 -11.64786 -11.41876 -11.36353 -11.26014 -11.12358 -11.05427 -10.87188 -10.55999 -10.42178 -10.38238 -9.88430 -9.80792 -9.52990 -9.09975 -8.54076 -6.15983 -4.21692 0.73270 3.01180 3.22793 3.30330 3.33213 3.66850 4.15486 4.23294 4.34309 4.51361 4.62780 4.69010 4.89558 4.98937 5.04340 5.19438 5.21209 5.40455 5.48598 5.53633 5.58049 5.60798 5.66381 5.74933 5.84634 5.93460 5.97103 6.08549 6.34723 6.45687 6.71362 7.02043 7.25363 7.32007 7.76963 8.13319 8.81914 9.43440 10.95082 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024433 B = 0.005263 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.709750 B = 5319.309721 C = 5925.949049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.080 3.920 3 H 0.074 0.926 4 O -0.373 6.373 5 C 0.049 3.951 6 C -0.186 4.186 7 C 0.149 3.851 8 C -0.171 4.171 9 N -1.115 6.115 10 S 2.590 3.410 11 O -0.967 6.967 12 O -0.963 6.963 13 C -0.592 4.592 14 C 0.029 3.971 15 C -0.520 4.520 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.412 0.588 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.035 0.965 37 H 0.032 0.968 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 4.975 -15.196 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.020 3.980 3 H 0.092 0.908 4 O -0.292 6.292 5 C -0.028 4.028 6 C -0.225 4.225 7 C 0.060 3.940 8 C -0.229 4.229 9 N -0.872 5.872 10 S 2.688 3.312 11 O -0.957 6.957 12 O -0.952 6.952 13 C -0.725 4.725 14 C -0.010 4.010 15 C -0.559 4.559 16 H 0.080 0.920 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.246 0.754 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.089 5.374 -14.392 17.362 hybrid contribution 1.167 -1.024 -0.320 1.585 sum -6.922 4.350 -14.712 16.831 Atomic orbital electron populations 1.22060 0.93058 1.03388 1.02540 1.22920 0.95679 0.95519 0.83862 0.90810 1.88888 1.39875 1.67672 1.32760 1.23513 0.87578 0.96519 0.95143 1.24003 1.01960 0.98988 0.97506 1.21457 0.91005 0.89536 0.92037 1.22643 0.97569 1.02573 1.00150 1.55951 1.65940 1.33128 1.32172 1.05640 0.75340 0.77909 0.72274 1.93554 1.67686 1.55650 1.78836 1.93568 1.38932 1.87158 1.75576 1.30607 1.12466 1.18623 1.10825 1.18965 0.97571 0.98894 0.85586 1.21021 1.36267 1.04151 0.94493 0.91985 1.25067 0.96080 0.97957 0.95339 1.69964 1.45176 1.38746 0.98904 0.86424 0.79412 0.83296 0.78211 1.19646 1.20793 1.20785 0.90519 0.91151 0.92047 0.91931 0.88669 0.88452 0.88845 0.90701 0.90203 0.90033 0.75387 0.86011 0.86060 0.94678 0.94981 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.40 37.15 0.31 -1.09 16 2 C 0.08 0.83 3.84 -26.16 -0.10 0.73 16 3 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 4 O -0.37 -4.27 11.19 -35.23 -0.39 -4.66 16 5 C 0.05 0.48 7.72 38.22 0.29 0.78 16 6 C -0.19 -1.99 5.62 -24.72 -0.14 -2.13 16 7 C 0.15 1.73 1.09 -130.29 -0.14 1.58 16 8 C -0.17 -2.09 5.98 37.16 0.22 -1.87 16 9 N -1.12 -14.11 5.46 1.77 0.01 -14.10 16 10 S 2.59 44.81 5.01 -107.50 -0.54 44.27 16 11 O -0.97 -19.94 18.08 -57.54 -1.04 -20.98 16 12 O -0.96 -18.61 14.67 -57.54 -0.84 -19.46 16 13 C -0.59 -10.83 4.18 37.16 0.16 -10.67 16 14 C 0.03 0.72 4.98 -27.89 -0.14 0.58 16 15 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H 0.08 0.66 6.83 -51.93 -0.35 0.31 16 24 H 0.07 0.62 6.72 -51.93 -0.35 0.27 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.10 1.07 5.24 -51.93 -0.27 0.80 16 29 H 0.09 0.92 7.85 -51.93 -0.41 0.52 16 30 H 0.07 0.74 6.80 -51.93 -0.35 0.39 16 31 H 0.08 1.12 5.31 -51.93 -0.28 0.85 16 32 H 0.08 1.00 6.53 -51.93 -0.34 0.66 16 33 H 0.41 4.39 8.33 -34.47 -0.29 4.10 16 34 H 0.12 1.99 6.72 -51.93 -0.35 1.64 16 35 H 0.12 1.97 7.39 -51.92 -0.38 1.59 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -33.66 306.98 -7.83 -41.49 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.42 Total: 3.22 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 0.05 Total: -24.88 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.75 Total: -39.48 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -2.28 Total: -45.09 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 44.81 SS G_CDS: -0.54 Total: 44.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.66 -7.83 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343975231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.798 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds