Wall clock time and date at job start Mon Mar 30 2020 02:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.87326 * 2 1 4 4 O 1.43741 * 109.88259 * 238.83845 * 2 1 3 5 5 C 1.44377 * 106.97956 * 214.06315 * 4 2 1 6 6 C 1.55005 * 103.48954 * 40.05646 * 5 4 2 7 7 C 1.54095 * 109.88006 * 121.00484 * 2 1 3 8 8 C 1.52999 * 110.48842 * 2.64437 * 7 2 1 9 9 N 1.46506 * 110.49272 * 240.13228 * 7 2 1 10 10 S 1.65597 * 120.00192 * 161.88444 * 9 7 2 11 11 O 1.42103 * 104.27368 * 175.94882 * 10 9 7 12 12 O 1.42103 * 104.27842 * 303.80298 * 10 9 7 13 13 C 1.81401 * 104.44999 * 59.87739 * 10 9 7 14 14 C 1.53002 * 109.47025 * 173.50961 * 13 10 9 15 15 C 1.50692 * 109.46901 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00340 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99857 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00167 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46795 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47011 * 119.99801 * 19 17 15 22 22 H 1.48498 * 109.47083 * 240.00067 * 19 17 15 23 23 H 1.09002 * 109.47443 * 298.99720 * 1 2 3 24 24 H 1.09002 * 109.47213 * 178.99289 * 1 2 3 25 25 H 1.09003 * 109.47046 * 58.99385 * 1 2 3 26 26 H 1.09002 * 110.61653 * 281.56076 * 5 4 2 27 27 H 1.08998 * 110.75763 * 158.62219 * 5 4 2 28 28 H 1.08994 * 110.90531 * 204.77945 * 6 5 4 29 29 H 1.08998 * 110.93541 * 81.19275 * 6 5 4 30 30 H 1.09002 * 109.46837 * 60.00272 * 8 7 2 31 31 H 1.09001 * 109.47340 * 179.97438 * 8 7 2 32 32 H 1.08995 * 109.47366 * 300.00318 * 8 7 2 33 33 H 0.96999 * 119.99555 * 341.88449 * 9 7 2 34 34 H 1.08993 * 109.47068 * 293.50830 * 13 10 9 35 35 H 1.08999 * 109.47187 * 53.51370 * 13 10 9 36 36 H 1.09000 * 109.47174 * 300.00255 * 14 13 10 37 37 H 1.08999 * 109.46804 * 60.00175 * 14 13 10 38 38 H 0.97001 * 119.99723 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 3.2379 -1.3651 -0.7629 6 6 2.9195 -1.8905 0.6603 7 6 2.0539 -0.7465 1.2421 8 6 0.8897 -1.3133 2.0570 9 7 2.8710 0.1448 2.0693 10 16 3.1799 -0.2436 3.6492 11 8 4.0621 0.7774 4.0949 12 8 1.8924 -0.4038 4.2288 13 6 4.0422 -1.8372 3.5632 14 6 4.5281 -2.2301 4.9598 15 6 5.2439 -3.5543 4.8885 16 1 5.3428 -4.0644 3.9418 17 6 5.7726 -4.1146 6.0321 18 7 5.6527 -3.4931 7.1849 19 14 6.6606 -5.7557 5.9436 20 1 6.6596 -6.2440 4.5412 21 1 8.0608 -5.5866 6.4085 22 1 5.9666 -6.7413 6.8109 23 1 -0.3634 0.4982 0.8988 24 1 -0.3634 -1.0275 -0.0181 25 1 -0.3633 0.5294 -0.8808 26 1 4.0685 -0.6598 -0.7347 27 1 3.4612 -2.1925 -1.4364 28 1 3.8331 -2.0207 1.2402 29 1 2.3542 -2.8213 0.6144 30 1 0.3192 -2.0082 1.4406 31 1 1.2784 -1.8375 2.9300 32 1 0.2419 -0.4986 2.3805 33 1 3.2311 0.9625 1.6915 34 1 3.3598 -2.5998 3.1882 35 1 4.8967 -1.7523 2.8919 36 1 5.2106 -1.4674 5.3350 37 1 3.6737 -2.3151 5.6312 38 1 6.0243 -3.8875 7.9894 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343975231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:26 Heat of formation + Delta-G solvation = -148.471197 kcal Electronic energy + Delta-G solvation = -20978.815680 eV Core-core repulsion = 17754.370001 eV Total energy + Delta-G solvation = -3224.445679 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17705 -38.23908 -37.05841 -36.36642 -35.91006 -33.24185 -32.85074 -31.60784 -28.49221 -27.62668 -25.80665 -23.99614 -22.84197 -21.02027 -20.18508 -19.00049 -18.59683 -17.83281 -17.17192 -16.74210 -16.64082 -16.53232 -16.28183 -15.41135 -15.05090 -14.85452 -14.50312 -14.11555 -13.92276 -13.72332 -13.50347 -13.33332 -13.18912 -13.09122 -12.95620 -12.78320 -12.45833 -12.30548 -12.23391 -12.17775 -11.95158 -11.88830 -11.68618 -11.55955 -11.14600 -10.65011 -10.64153 -10.44175 -8.25521 -6.39065 -0.70066 1.42012 1.42034 1.55234 1.76367 2.38326 2.76034 2.86882 3.08640 3.23437 3.44462 3.66748 3.76344 3.87918 4.06796 4.12575 4.18934 4.28813 4.43269 4.66641 4.67856 4.70891 4.75505 4.87231 4.93516 5.08557 5.09120 5.17413 5.22048 5.27559 5.29528 5.47533 5.69410 5.91143 6.05806 6.08518 6.75071 7.31351 8.87038 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024433 B = 0.005263 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.709750 B = 5319.309721 C = 5925.949049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.080 3.920 3 H 0.082 0.918 4 O -0.384 6.384 5 C 0.047 3.953 6 C -0.190 4.190 7 C 0.144 3.856 8 C -0.177 4.177 9 N -1.097 6.097 10 S 2.615 3.385 11 O -1.003 7.003 12 O -0.984 6.984 13 C -0.589 4.589 14 C 0.022 3.978 15 C -0.535 4.535 16 H 0.078 0.922 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.254 1.254 21 H -0.280 1.280 22 H -0.279 1.279 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.424 0.576 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 4.044 -17.583 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.021 3.979 3 H 0.100 0.900 4 O -0.303 6.303 5 C -0.029 4.029 6 C -0.229 4.229 7 C 0.055 3.945 8 C -0.235 4.235 9 N -0.858 5.858 10 S 2.712 3.288 11 O -0.993 6.993 12 O -0.974 6.974 13 C -0.721 4.721 14 C -0.017 4.017 15 C -0.574 4.574 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.178 1.178 21 H -0.206 1.206 22 H -0.205 1.205 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.261 0.739 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.156 4.446 -16.796 19.193 hybrid contribution 1.130 -0.688 0.366 1.372 sum -7.026 3.758 -16.430 18.260 Atomic orbital electron populations 1.22082 0.92105 1.03834 1.03102 1.22963 0.96459 0.95615 0.82886 0.90018 1.88886 1.40511 1.67901 1.33032 1.23647 0.87276 0.97160 0.94797 1.24057 1.01736 0.99050 0.98030 1.21653 0.90832 0.89885 0.92131 1.22699 0.98025 1.02865 0.99896 1.55479 1.65868 1.33816 1.30621 1.04627 0.74293 0.76776 0.73063 1.93502 1.68658 1.56757 1.80373 1.93546 1.39676 1.87221 1.76956 1.30505 1.14039 1.20255 1.07266 1.18810 0.96045 0.97872 0.88949 1.21537 1.35821 1.04880 0.95136 0.90408 1.26094 0.97043 1.02066 0.94957 1.70110 1.46677 1.40875 0.99831 0.85290 0.77801 0.78282 0.79029 1.17769 1.20567 1.20508 0.90243 0.90812 0.91231 0.91215 0.87045 0.88727 0.87834 0.88372 0.92284 0.90417 0.73864 0.83825 0.83731 0.97576 0.97585 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.40 71.98 0.60 -1.83 16 2 C 0.08 1.47 3.84 30.96 0.12 1.59 16 3 H 0.08 1.38 7.57 -2.39 -0.02 1.36 16 4 O -0.38 -7.67 11.19 -148.98 -1.67 -9.33 16 5 C 0.05 0.79 7.72 72.67 0.56 1.35 16 6 C -0.19 -3.55 5.62 31.90 0.18 -3.37 16 7 C 0.14 3.01 1.09 4.59 0.01 3.02 16 8 C -0.18 -4.02 5.98 71.98 0.43 -3.59 16 9 N -1.10 -26.00 5.46 -148.31 -0.81 -26.81 16 10 S 2.62 90.04 5.01 -56.49 -0.28 89.76 16 11 O -1.00 -41.78 18.08 -127.65 -2.31 -44.09 16 12 O -0.98 -38.30 14.67 -127.65 -1.87 -40.17 16 13 C -0.59 -21.19 4.18 71.98 0.30 -20.89 16 14 C 0.02 1.12 4.98 29.85 0.15 1.27 16 15 C -0.53 -28.78 9.11 25.60 0.23 -28.55 16 16 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 17 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 18 N -0.94 -56.26 13.29 21.45 0.28 -55.97 16 19 Si 0.97 42.48 29.54 68.60 2.03 44.51 16 20 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 21 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H 0.08 1.21 6.83 -2.39 -0.02 1.20 16 24 H 0.07 1.11 6.72 -2.39 -0.02 1.09 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 1.82 5.24 -2.39 -0.01 1.81 16 29 H 0.10 1.73 7.85 -2.39 -0.02 1.72 16 30 H 0.10 1.73 6.80 -2.39 -0.02 1.71 16 31 H 0.06 1.60 5.31 -2.39 -0.01 1.59 16 32 H 0.08 1.81 6.53 -2.39 -0.02 1.80 16 33 H 0.42 8.24 8.33 -96.75 -0.81 7.43 16 34 H 0.14 4.49 6.72 -2.39 -0.02 4.48 16 35 H 0.14 4.47 7.39 -2.39 -0.02 4.45 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -72.96 306.98 -1.32 -74.28 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.27 Total: 18.55 kcal Atomic # 6 Polarization: -53.76 SS G_CDS: 3.04 Total: -50.72 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -0.52 Total: -82.78 kcal Atomic # 8 Polarization: -87.74 SS G_CDS: -5.85 Total: -93.59 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 90.04 SS G_CDS: -0.28 Total: 89.76 kcal Total: -72.96 -1.32 -74.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343975231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.196 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds