Wall clock time and date at job start Mon Mar 30 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46834 * 2 1 4 4 N 1.46498 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.36907 * 120.00098 * 264.36652 * 4 3 2 6 6 H 1.07997 * 120.00012 * 185.19146 * 5 4 3 7 7 C 1.39025 * 119.99982 * 5.19786 * 5 4 3 8 8 N 1.31379 * 120.00010 * 34.57120 * 7 5 4 9 9 Si 1.86801 * 119.99712 * 214.57876 * 7 5 4 10 10 H 1.48497 * 109.47575 * 94.99554 * 9 7 5 11 11 H 1.48505 * 109.46805 * 214.99609 * 9 7 5 12 12 H 1.48497 * 109.47190 * 334.99408 * 9 7 5 13 13 C 1.34773 * 119.99876 * 84.36333 * 4 3 2 14 14 O 1.21626 * 119.99609 * 185.58281 * 13 4 3 15 15 C 1.47434 * 120.00109 * 5.85629 * 13 4 3 16 16 C 1.39865 * 120.16274 * 54.71729 * 15 13 4 17 17 C 1.37733 * 119.97625 * 179.97438 * 16 15 13 18 18 C 1.38546 * 120.36455 * 359.97438 * 17 16 15 19 19 C 1.38457 * 120.38539 * 0.02838 * 18 17 16 20 20 C 1.39263 * 119.91726 * 359.69296 * 19 18 17 21 21 O 1.36216 * 108.72250 * 179.77196 * 20 19 18 22 22 C 1.43990 * 105.58596 * 343.12269 * 21 20 19 23 23 O 1.36529 * 131.49281 * 179.97438 * 19 18 17 24 24 H 1.09003 * 109.46845 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47234 * 299.99578 * 1 2 3 26 26 H 1.08999 * 109.46827 * 59.99907 * 1 2 3 27 27 H 1.08998 * 109.47234 * 240.00422 * 2 1 3 28 28 H 1.08999 * 109.46827 * 120.00093 * 2 1 3 29 29 H 1.08998 * 109.46865 * 60.00196 * 3 2 1 30 30 H 1.08999 * 109.47374 * 300.00231 * 3 2 1 31 31 H 0.97004 * 119.99798 * 179.97438 * 8 7 5 32 32 H 1.07996 * 120.00941 * 359.94671 * 16 15 13 33 33 H 1.08007 * 119.81807 * 179.97438 * 17 16 15 34 34 H 1.08000 * 119.80783 * 180.02562 * 18 17 16 35 35 H 1.09002 * 110.57710 * 268.30830 * 22 21 20 36 36 H 1.08994 * 110.70652 * 145.48859 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1890 1.5592 1.1808 6 1 5.2657 1.6437 1.1748 7 6 3.4977 1.5688 2.3869 8 7 2.4122 0.8421 2.5277 9 14 4.1121 2.6149 3.8073 10 1 3.4078 3.9222 3.8003 11 1 3.8442 1.9152 5.0895 12 1 5.5728 2.8389 3.6615 13 6 4.1793 1.3278 -1.1606 14 8 5.3912 1.2257 -1.1525 15 6 3.4484 1.3322 -2.4411 16 6 2.5838 2.3863 -2.7531 17 6 1.9033 2.3867 -3.9506 18 6 2.0702 1.3473 -4.8513 19 6 2.9223 0.2962 -4.5578 20 6 3.6217 0.2846 -3.3535 21 8 4.3806 -0.8453 -3.2995 22 6 3.8382 -1.7240 -4.3030 23 8 3.2525 -0.8248 -5.2636 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.9301 0.8485 3.3694 32 1 2.4494 3.1994 -2.0552 33 1 1.2359 3.2018 -4.1888 34 1 1.5325 1.3570 -5.7879 35 1 3.0767 -2.3739 -3.8720 36 1 4.6284 -2.3157 -4.7650 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352402807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:47 Heat of formation + Delta-G solvation = -51.741391 kcal Electronic energy + Delta-G solvation = -22288.884695 eV Core-core repulsion = 18933.189583 eV Total energy + Delta-G solvation = -3355.695111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.89856 -38.93332 -36.98644 -35.99183 -35.23251 -32.49062 -31.46190 -30.34094 -29.72393 -25.93258 -25.64016 -24.87522 -22.94754 -22.59861 -20.76962 -19.63259 -17.88562 -17.39781 -17.06064 -16.71381 -16.23810 -15.55971 -14.67843 -14.46104 -14.25213 -13.89482 -13.85940 -13.66016 -13.04120 -12.93497 -12.71096 -12.67944 -12.21553 -12.03594 -11.75183 -11.47541 -11.21167 -11.03110 -10.99377 -10.66719 -10.42569 -10.37234 -10.17580 -9.65139 -8.89855 -8.59779 -8.29027 -7.86207 -7.79195 -6.52447 -3.76386 1.31899 1.42735 2.99600 3.10193 3.24013 3.29803 3.60124 3.68022 3.98859 4.13569 4.61218 4.84323 4.91250 4.99377 5.04632 5.24420 5.38210 5.46638 5.52148 5.69350 5.90228 5.95131 6.17061 6.23108 6.26900 6.36104 6.50676 6.57210 6.62420 6.68796 6.74459 6.81386 7.18949 7.37586 7.39644 7.67111 8.03792 8.44434 9.11909 9.35701 9.95439 10.49534 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.022984 B = 0.006157 C = 0.005838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.929444 B = 4546.791373 C = 4795.003001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.116 3.884 4 N -0.423 5.423 5 C -0.316 4.316 6 H 0.109 0.891 7 C 0.041 3.959 8 N -0.841 5.841 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.469 3.531 14 O -0.582 6.582 15 C -0.064 4.064 16 C -0.090 4.090 17 C -0.117 4.117 18 C -0.103 4.103 19 C 0.021 3.979 20 C 0.068 3.932 21 O -0.291 6.291 22 C 0.209 3.791 23 O -0.314 6.314 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.270 0.730 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -0.425 -9.687 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C -0.007 4.007 4 N -0.139 5.139 5 C -0.443 4.443 6 H 0.126 0.874 7 C -0.166 4.166 8 N -0.477 5.477 9 Si 0.736 3.264 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.258 3.742 14 O -0.467 6.467 15 C -0.068 4.068 16 C -0.109 4.109 17 C -0.135 4.135 18 C -0.123 4.123 19 C -0.023 4.023 20 C 0.022 3.978 21 O -0.206 6.206 22 C 0.097 3.903 23 O -0.230 6.230 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.149 0.851 35 H 0.099 0.901 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.310 -0.663 -9.576 11.487 hybrid contribution 0.096 0.039 0.691 0.699 sum -6.214 -0.624 -8.885 10.860 Atomic orbital electron populations 1.21602 0.97135 1.00179 1.00573 1.21872 0.94088 0.98162 1.02380 1.21691 0.80684 0.97237 1.01128 1.43799 1.05307 1.59667 1.05144 1.19750 0.94082 1.48386 0.82068 0.87352 1.25191 0.96388 0.96456 0.98525 1.70197 1.19277 1.31799 1.26470 0.86172 0.79925 0.80487 0.79836 1.20259 1.21108 1.19145 1.17482 0.87325 0.86456 0.82961 1.90643 1.13515 1.56031 1.86558 1.19330 0.98684 0.93566 0.95255 1.21125 0.95333 0.97315 0.97132 1.20753 1.00992 0.98133 0.93650 1.19988 0.98324 0.92682 1.01257 1.19703 1.00195 0.91749 0.90673 1.19659 0.93052 0.90394 0.94668 1.87456 1.51814 1.25174 1.56180 1.25629 0.95814 0.89422 0.79422 1.87317 1.77199 1.25422 1.33079 0.93999 0.92735 0.94296 0.95205 0.88020 0.88864 0.93412 0.91999 0.84202 0.84523 0.85124 0.90140 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.16 0.37 -1.95 16 2 C -0.13 -2.65 5.80 -26.73 -0.15 -2.81 16 3 C 0.12 2.53 4.36 -4.04 -0.02 2.51 16 4 N -0.42 -10.80 2.63 -116.03 -0.31 -11.11 16 5 C -0.32 -8.67 9.36 -14.99 -0.14 -8.81 16 6 H 0.11 3.19 7.38 -52.49 -0.39 2.81 16 7 C 0.04 1.02 4.66 -17.45 -0.08 0.94 16 8 N -0.84 -20.76 9.15 55.50 0.51 -20.25 16 9 Si 0.91 19.74 29.67 -169.99 -5.04 14.70 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 13 C 0.47 12.17 7.04 -12.52 -0.09 12.08 16 14 O -0.58 -17.43 16.68 5.25 0.09 -17.35 16 15 C -0.06 -1.36 4.84 -104.88 -0.51 -1.87 16 16 C -0.09 -1.52 7.60 -39.16 -0.30 -1.82 16 17 C -0.12 -1.58 10.02 -39.65 -0.40 -1.98 16 18 C -0.10 -1.45 10.05 -39.39 -0.40 -1.85 16 19 C 0.02 0.36 7.14 -39.12 -0.28 0.08 16 20 C 0.07 1.39 6.88 -38.54 -0.27 1.12 16 21 O -0.29 -5.91 11.38 -44.77 -0.51 -6.42 16 22 C 0.21 2.99 8.90 101.05 0.90 3.89 16 23 O -0.31 -4.94 11.41 -45.79 -0.52 -5.46 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.63 8.00 -51.93 -0.42 0.22 16 28 H 0.10 2.45 6.33 -51.93 -0.33 2.12 16 29 H 0.09 2.14 5.98 -51.93 -0.31 1.83 16 30 H 0.05 0.91 4.53 -51.93 -0.24 0.68 16 31 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 32 H 0.14 2.20 7.35 -52.49 -0.39 1.82 16 33 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -32.12 303.51 -6.73 -38.84 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.16 Total: 2.93 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.36 Total: -0.46 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.20 Total: -31.36 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.94 Total: -29.23 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.04 Total: 14.70 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.12 -6.73 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352402807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.900 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds