Wall clock time and date at job start Mon Mar 30 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47911 * 2 1 4 4 C 1.53084 * 109.48368 * 120.03065 * 2 1 3 5 5 C 1.53174 * 109.16456 * 177.59004 * 4 2 1 6 6 H 1.08997 * 109.61789 * 62.93035 * 5 4 2 7 7 N 1.46504 * 109.54455 * 183.14981 * 5 4 2 8 8 S 1.65599 * 120.00236 * 214.55451 * 7 5 4 9 9 O 1.42096 * 104.27654 * 181.07244 * 8 7 5 10 10 O 1.42099 * 104.27692 * 308.92741 * 8 7 5 11 11 C 1.81394 * 104.44605 * 65.00112 * 8 7 5 12 12 C 1.53010 * 109.47069 * 179.97438 * 11 8 7 13 13 C 1.50694 * 109.47064 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00367 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99700 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00360 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00116 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47287 * 59.99945 * 17 15 13 19 19 H 1.48496 * 109.47455 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47145 * 299.99725 * 17 15 13 21 21 C 1.53176 * 109.03724 * 303.01556 * 5 4 2 22 22 C 1.53091 * 109.21206 * 56.94941 * 21 5 4 23 23 O 1.42906 * 109.47551 * 239.97049 * 2 1 3 24 24 H 1.09010 * 109.46671 * 299.97314 * 1 2 3 25 25 H 1.08996 * 109.47238 * 59.97028 * 1 2 3 26 26 H 1.08996 * 109.47603 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.52269 * 57.68131 * 4 2 1 28 28 H 1.09003 * 109.51985 * 297.49505 * 4 2 1 29 29 H 0.97005 * 119.99901 * 34.55432 * 7 5 4 30 30 H 1.09000 * 109.47671 * 299.99577 * 11 8 7 31 31 H 1.09003 * 109.47446 * 60.00469 * 11 8 7 32 32 H 1.09000 * 109.46568 * 300.00301 * 12 11 8 33 33 H 1.09003 * 109.46564 * 59.99977 * 12 11 8 34 34 H 0.96996 * 120.00461 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.52410 * 176.88783 * 21 5 4 36 36 H 1.09004 * 109.52533 * 297.01429 * 21 5 4 37 37 H 1.08998 * 109.48266 * 62.40567 * 22 21 5 38 38 H 1.08996 * 109.48151 * 182.44157 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 1.2494 5 6 3.5711 -0.7709 1.2120 6 1 3.9703 0.2429 1.2414 7 7 4.0659 -1.5259 2.3659 8 16 5.4887 -1.0900 3.0924 9 8 5.6565 -2.0422 4.1337 10 8 6.4178 -1.0051 2.0206 11 6 5.1594 0.5554 3.7813 12 6 6.4140 1.0728 4.4880 13 6 6.1407 2.4400 5.0598 14 1 5.1692 2.8943 4.9324 15 6 7.1309 3.1109 5.7457 16 7 8.3137 2.5575 5.9013 17 14 6.7920 4.8053 6.4552 18 1 5.6753 4.7195 7.4303 19 1 8.0100 5.3081 7.1398 20 1 6.4214 5.7360 5.3588 21 6 4.0176 -1.4601 -0.0810 22 6 3.4306 -0.7107 -1.2800 23 8 2.0064 -0.6742 -1.1664 24 1 -0.3633 0.5135 0.8903 25 1 -0.3633 0.5143 -0.8897 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6443 -1.7375 1.2708 28 1 1.7149 -0.1843 2.1398 29 1 3.5600 -2.2813 2.7043 30 1 4.8875 1.2386 2.9767 31 1 4.3397 0.4923 4.4971 32 1 6.6856 0.3896 5.2927 33 1 7.2340 1.1358 3.7726 34 1 9.0104 3.0296 6.3835 35 1 5.1058 -1.4499 -0.1423 36 1 3.6622 -2.4906 -0.0860 37 1 3.8190 0.3075 -1.2979 38 1 3.7098 -1.2227 -2.2008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408075860.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:18 Heat of formation + Delta-G solvation = -169.063169 kcal Electronic energy + Delta-G solvation = -20279.521119 eV Core-core repulsion = 17054.182505 eV Total energy + Delta-G solvation = -3225.338614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54679 -38.16747 -37.04733 -36.65597 -35.89959 -33.67648 -33.13413 -31.87740 -28.38589 -27.60231 -24.86053 -23.63447 -23.09664 -21.48396 -20.28076 -19.11202 -18.31448 -17.60033 -17.24070 -16.99808 -16.65808 -16.53001 -16.01698 -15.65414 -15.13937 -15.06522 -14.66892 -14.45965 -13.74605 -13.45361 -13.24263 -13.20654 -13.12460 -13.05848 -12.90959 -12.83831 -12.75815 -12.49920 -12.29832 -12.18998 -12.07636 -11.98703 -11.73757 -11.25841 -11.15454 -10.63866 -10.52049 -10.35812 -8.25888 -6.40176 -0.69527 1.41358 1.44569 1.52783 1.80911 2.38214 2.78962 2.87578 3.07703 3.25561 3.63966 3.78663 3.85801 3.98735 4.03127 4.08287 4.21808 4.28408 4.44623 4.57416 4.72166 4.75015 4.78392 4.82909 4.90652 5.08295 5.12204 5.19248 5.26368 5.27253 5.34374 5.37674 5.68047 6.05632 6.10591 6.33007 6.73458 7.30258 8.86214 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.004656 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.899027 B = 6012.706746 C = 6784.968745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.066 0.934 4 C -0.150 4.150 5 C 0.141 3.859 6 H 0.088 0.912 7 N -1.101 6.101 8 S 2.618 3.382 9 O -1.001 7.001 10 O -0.993 6.993 11 C -0.588 4.588 12 C 0.020 3.980 13 C -0.540 4.540 14 H 0.077 0.923 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.974 3.026 18 H -0.263 1.263 19 H -0.285 1.285 20 H -0.262 1.262 21 C -0.176 4.176 22 C 0.064 3.936 23 O -0.394 6.394 24 H 0.087 0.913 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.425 0.575 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.005 0.995 33 H 0.007 0.993 34 H 0.267 0.733 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.676 -4.866 -12.233 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.021 3.979 3 H 0.084 0.916 4 C -0.189 4.189 5 C 0.034 3.966 6 H 0.106 0.894 7 N -0.861 5.861 8 S 2.714 3.286 9 O -0.991 6.991 10 O -0.983 6.983 11 C -0.720 4.720 12 C -0.019 4.019 13 C -0.579 4.579 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.215 4.215 22 C -0.014 4.014 23 O -0.314 6.314 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.262 0.738 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.734 -5.346 -12.342 20.699 hybrid contribution 0.193 0.848 0.983 1.313 sum -15.540 -4.498 -11.359 19.768 Atomic orbital electron populations 1.21767 0.91555 1.03176 1.03359 1.22281 0.96317 0.95283 0.84032 0.91562 1.22578 0.92701 1.03624 1.00046 1.21028 0.96135 0.94884 0.84528 0.89362 1.55407 1.43672 1.44209 1.42825 1.04547 0.73635 0.77017 0.73369 1.93503 1.85494 1.60352 1.59755 1.93504 1.62147 1.87770 1.54872 1.30347 1.08645 1.20636 1.12401 1.18820 0.90718 0.97536 0.94826 1.21490 0.99320 1.01793 1.35281 0.90498 1.26111 0.94675 1.02949 0.96418 1.70093 1.04527 1.40371 1.42435 0.85370 0.77770 0.78326 0.78822 1.18774 1.21079 1.18704 1.22767 1.02146 1.01482 0.95151 1.22626 0.80302 1.00224 0.98215 1.87909 1.21485 1.78258 1.43727 0.89427 0.91732 0.91863 0.89625 0.88377 0.73842 0.84016 0.83783 0.97641 0.97466 0.92401 0.90745 0.90212 0.92315 0.87233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.56 71.98 0.69 -1.04 16 2 C 0.08 1.25 3.27 30.62 0.10 1.35 16 3 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 4 C -0.15 -2.32 4.95 30.68 0.15 -2.17 16 5 C 0.14 2.91 2.65 45.11 0.12 3.03 16 6 H 0.09 1.79 7.16 -2.39 -0.02 1.77 16 7 N -1.10 -25.74 5.37 -168.89 -0.91 -26.65 16 8 S 2.62 90.48 5.38 -56.49 -0.30 90.18 16 9 O -1.00 -41.36 18.08 -127.65 -2.31 -43.67 16 10 O -0.99 -40.22 17.18 -127.65 -2.19 -42.41 16 11 C -0.59 -21.37 5.90 71.99 0.42 -20.95 16 12 C 0.02 1.02 4.98 29.85 0.15 1.17 16 13 C -0.54 -29.44 9.11 25.60 0.23 -29.21 16 14 H 0.08 3.83 7.74 -2.91 -0.02 3.80 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 17 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 18 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 21 C -0.18 -3.69 5.74 30.68 0.18 -3.51 16 22 C 0.06 1.15 6.85 72.01 0.49 1.64 16 23 O -0.39 -7.67 10.40 -148.98 -1.55 -9.22 16 24 H 0.09 0.80 8.14 -2.38 -0.02 0.79 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.43 8.05 8.80 -96.74 -0.85 7.20 16 30 H 0.14 4.39 7.44 -2.39 -0.02 4.38 16 31 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.07 1.85 7.50 -2.39 -0.02 1.83 16 36 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -74.59 323.68 -1.76 -76.35 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.19 Total: 16.42 kcal Atomic # 6 Polarization: -52.40 SS G_CDS: 3.00 Total: -49.40 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -0.62 Total: -82.92 kcal Atomic # 8 Polarization: -89.24 SS G_CDS: -6.05 Total: -95.30 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 90.48 SS G_CDS: -0.30 Total: 90.18 kcal Total: -74.59 -1.76 -76.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408075860.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.710 kcal (2) G-P(sol) polarization free energy of solvation -74.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds