Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47981 * 2 1 4 4 C 1.53095 * 109.47648 * 120.01732 * 2 1 3 5 5 C 1.53184 * 109.16248 * 177.59857 * 4 2 1 6 6 H 1.09000 * 109.54227 * 183.06483 * 5 4 2 7 7 N 1.46499 * 109.54323 * 62.88562 * 5 4 2 8 8 S 1.65593 * 119.99833 * 145.00335 * 7 5 4 9 9 O 1.42104 * 104.27905 * 308.92754 * 8 7 5 10 10 O 1.42102 * 104.27718 * 181.06534 * 8 7 5 11 11 C 1.81399 * 104.45079 * 64.99683 * 8 7 5 12 12 C 1.53005 * 109.47445 * 179.97438 * 11 8 7 13 13 C 1.50696 * 109.47353 * 179.97438 * 12 11 8 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99993 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00415 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00139 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47176 * 89.99933 * 17 15 13 19 19 H 1.48504 * 109.47386 * 210.00135 * 17 15 13 20 20 H 1.48504 * 109.46946 * 329.99954 * 17 15 13 21 21 C 1.53179 * 109.03189 * 303.01622 * 5 4 2 22 22 C 1.53092 * 109.16132 * 56.98458 * 21 5 4 23 23 O 1.42902 * 109.48361 * 239.95850 * 2 1 3 24 24 H 1.08995 * 109.47558 * 299.98164 * 1 2 3 25 25 H 1.09008 * 109.46694 * 59.98790 * 1 2 3 26 26 H 1.09010 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.52262 * 57.69008 * 4 2 1 28 28 H 1.09000 * 109.57242 * 297.53157 * 4 2 1 29 29 H 0.97001 * 119.99882 * 324.99807 * 7 5 4 30 30 H 1.09001 * 109.47190 * 299.99797 * 11 8 7 31 31 H 1.09004 * 109.47089 * 59.99930 * 11 8 7 32 32 H 1.09001 * 109.46962 * 300.00183 * 12 11 8 33 33 H 1.09004 * 109.46832 * 60.00020 * 12 11 8 34 34 H 0.96999 * 120.00929 * 180.02562 * 16 15 13 35 35 H 1.08992 * 109.52040 * 176.88496 * 21 5 4 36 36 H 1.08996 * 109.52710 * 297.07635 * 21 5 4 37 37 H 1.09003 * 109.47789 * 182.41051 * 22 21 5 38 38 H 1.08997 * 109.49424 * 62.37517 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7221 1.2498 5 6 3.5711 -0.7706 1.2125 6 1 3.9391 -1.3309 2.0720 7 7 4.1057 0.5929 1.2509 8 16 5.5203 0.9052 2.0530 9 8 5.3302 0.3267 3.3370 10 8 5.7076 2.3056 1.9008 11 6 6.7799 -0.0102 1.1226 12 6 8.1487 0.2015 1.7729 13 6 9.1950 -0.5596 1.0003 14 1 8.9123 -1.1362 0.1320 15 6 10.5133 -0.5197 1.4019 16 7 11.4267 -1.1834 0.7274 17 14 11.0024 0.4772 2.9041 18 1 10.9183 -0.3785 4.1148 19 1 12.3944 0.9682 2.7407 20 1 10.0833 1.6343 3.0509 21 6 4.0177 -1.4600 -0.0804 22 6 3.4309 -0.7094 -1.2787 23 8 2.0066 -0.6744 -1.1662 24 1 -0.3634 0.5135 0.8901 25 1 -0.3633 0.5141 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6442 -1.7373 1.2713 28 1 1.7146 -0.1849 2.1405 29 1 3.6310 1.3126 0.8063 30 1 6.5352 -1.0724 1.1279 31 1 6.8067 0.3514 0.0946 32 1 8.3932 1.2637 1.7672 33 1 8.1222 -0.1598 2.8010 34 1 12.3541 -1.1557 1.0101 35 1 5.1058 -1.4497 -0.1415 36 1 3.6614 -2.4901 -0.0857 37 1 3.7101 -1.2207 -2.2000 38 1 3.8193 0.3088 -1.2958 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408075861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -162.191839 kcal Electronic energy + Delta-G solvation = -20608.768989 eV Core-core repulsion = 17383.728338 eV Total energy + Delta-G solvation = -3225.040651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.73315 -38.20262 -37.07164 -36.46546 -35.90366 -33.73739 -33.44009 -31.72306 -28.56638 -27.85062 -25.19236 -23.33444 -23.07561 -21.30696 -20.14028 -19.37451 -18.59284 -17.44656 -17.23198 -17.10514 -16.73366 -16.41387 -16.29796 -15.52742 -15.31057 -14.96477 -14.82448 -14.26748 -13.87090 -13.71446 -13.36066 -13.26078 -13.14615 -13.10000 -13.04039 -13.00799 -12.69250 -12.58611 -12.23635 -12.11027 -12.03319 -11.94147 -11.70812 -11.28185 -11.22548 -10.83891 -10.54189 -10.26265 -8.35988 -6.41453 -0.72929 1.32000 1.34297 1.43770 1.76010 2.29723 2.73482 2.88509 2.98270 3.21867 3.65330 3.77471 3.86018 3.91190 4.01533 4.05962 4.22448 4.29009 4.43035 4.54938 4.61978 4.69995 4.78572 4.84829 4.91100 5.04256 5.06143 5.07880 5.16092 5.20144 5.28087 5.35263 5.47927 6.03102 6.17306 6.33925 6.64857 7.23080 8.79425 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.004790 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.529512 B = 5843.593589 C = 6378.611353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.060 0.940 4 C -0.147 4.147 5 C 0.137 3.863 6 H 0.099 0.901 7 N -1.104 6.104 8 S 2.621 3.379 9 O -0.989 6.989 10 O -0.994 6.994 11 C -0.589 4.589 12 C -0.017 4.017 13 C -0.525 4.525 14 H 0.051 0.949 15 C 0.014 3.986 16 N -0.940 5.940 17 Si 0.923 3.077 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.250 1.250 21 C -0.184 4.184 22 C 0.059 3.941 23 O -0.393 6.393 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.421 0.579 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.269 0.731 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.868 1.344 -1.125 21.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.019 3.981 3 H 0.078 0.922 4 C -0.186 4.186 5 C 0.030 3.970 6 H 0.117 0.883 7 N -0.865 5.865 8 S 2.716 3.284 9 O -0.979 6.979 10 O -0.984 6.984 11 C -0.720 4.720 12 C -0.056 4.056 13 C -0.564 4.564 14 H 0.070 0.930 15 C -0.184 4.184 16 N -0.580 5.580 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.174 1.174 21 C -0.223 4.223 22 C -0.018 4.018 23 O -0.312 6.312 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.258 0.742 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.666 1.636 -0.384 21.731 hybrid contribution 1.085 0.176 -0.141 1.108 sum -20.581 1.812 -0.525 20.667 Atomic orbital electron populations 1.21778 0.91789 1.03255 1.03152 1.22242 0.96126 0.95045 0.84694 0.92225 1.22455 0.92974 1.03756 0.99450 1.21086 0.96011 0.81139 0.98765 0.88328 1.55467 1.40612 1.16838 1.73601 1.04470 0.75029 0.73937 0.74922 1.93521 1.84990 1.80086 1.39331 1.93522 1.86165 1.31533 1.87225 1.30403 1.11606 1.15447 1.14587 1.19373 0.91786 0.97856 0.96606 1.21166 0.91941 1.30013 1.13261 0.93026 1.25845 0.96647 0.96209 0.99726 1.70002 1.02425 1.43670 1.41875 0.86054 0.78548 0.80515 0.80285 1.18547 1.20060 1.17373 1.22866 1.02528 1.01526 0.95376 1.22603 0.80422 1.00221 0.98547 1.87922 1.21509 1.78192 1.43609 0.89595 0.91956 0.91660 0.88522 0.89199 0.74176 0.83936 0.83956 0.95088 0.95068 0.92165 0.89933 0.88490 0.87871 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.56 71.98 0.69 -1.07 16 2 C 0.08 1.20 3.07 30.63 0.09 1.29 16 3 H 0.06 0.89 6.70 -2.39 -0.02 0.88 16 4 C -0.15 -2.24 5.11 30.69 0.16 -2.08 16 5 C 0.14 2.59 3.05 45.11 0.14 2.73 16 6 H 0.10 1.94 7.48 -2.39 -0.02 1.92 16 7 N -1.10 -23.78 4.76 -168.88 -0.80 -24.59 16 8 S 2.62 81.24 5.44 -56.49 -0.31 80.93 16 9 O -0.99 -35.97 17.39 -127.65 -2.22 -38.19 16 10 O -0.99 -36.66 18.08 -127.65 -2.31 -38.97 16 11 C -0.59 -19.88 5.12 71.98 0.37 -19.51 16 12 C -0.02 -0.78 4.05 29.85 0.12 -0.66 16 13 C -0.52 -28.97 9.66 25.60 0.25 -28.72 16 14 H 0.05 3.03 7.99 -2.91 -0.02 3.00 16 15 C 0.01 0.82 5.47 84.65 0.46 1.28 16 16 N -0.94 -57.16 13.96 21.44 0.30 -56.86 16 17 Si 0.92 43.36 27.47 68.60 1.88 45.24 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 21 C -0.18 -3.29 5.82 30.68 0.18 -3.11 16 22 C 0.06 1.05 6.68 72.01 0.48 1.53 16 23 O -0.39 -7.59 10.41 -148.98 -1.55 -9.14 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.42 7.60 7.04 -96.75 -0.68 6.91 16 30 H 0.14 4.27 6.88 -2.39 -0.02 4.25 16 31 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 32 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 33 H 0.03 1.39 7.57 -2.38 -0.02 1.37 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.08 1.57 5.82 -2.39 -0.01 1.56 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.05 0.95 7.63 -2.39 -0.02 0.93 16 Total: -1.00 -72.49 313.60 -1.75 -74.25 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.32 Total: 15.65 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 2.94 Total: -48.32 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -0.50 Total: -81.45 kcal Atomic # 8 Polarization: -80.22 SS G_CDS: -6.08 Total: -86.30 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Atomic # 16 Polarization: 81.24 SS G_CDS: -0.31 Total: 80.93 kcal Total: -72.49 -1.75 -74.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408075861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.945 kcal (2) G-P(sol) polarization free energy of solvation -72.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds