Wall clock time and date at job start Mon Mar 30 2020 01:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53952 * 113.74182 * 248.74143 * 3 2 1 5 5 N 1.47814 * 86.03670 * 222.08715 * 4 3 2 6 6 S 1.65601 * 134.45455 * 204.64599 * 5 4 3 7 7 O 1.42103 * 104.27663 * 25.93518 * 6 5 4 8 8 O 1.42110 * 104.27727 * 153.79314 * 6 5 4 9 9 C 1.81393 * 104.44830 * 269.86273 * 6 5 4 10 10 C 1.53008 * 109.47091 * 179.97438 * 9 6 5 11 11 C 1.52997 * 109.47093 * 299.99921 * 10 9 6 12 12 C 1.52996 * 109.46763 * 60.00425 * 10 9 6 13 13 C 1.50704 * 109.46787 * 180.02562 * 10 9 6 14 14 H 1.07993 * 120.00410 * 359.97438 * 13 10 9 15 15 C 1.37882 * 119.99662 * 180.02562 * 13 10 9 16 16 N 1.31509 * 119.99779 * 359.97438 * 15 13 10 17 17 Si 1.86792 * 119.99980 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47192 * 59.99908 * 17 15 13 19 19 H 1.48497 * 109.47200 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47290 * 299.99906 * 17 15 13 21 21 C 1.47583 * 91.05136 * 24.54698 * 5 4 3 22 22 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 23 23 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.09004 * 112.94781 * 20.33399 * 3 2 1 26 26 H 1.08996 * 113.76681 * 336.34716 * 4 3 2 27 27 H 1.08997 * 113.77061 * 107.74793 * 4 3 2 28 28 H 1.08994 * 109.47761 * 299.99990 * 9 6 5 29 29 H 1.09004 * 109.47455 * 60.00288 * 9 6 5 30 30 H 1.09001 * 109.46951 * 60.00391 * 11 10 9 31 31 H 1.09003 * 109.46647 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47600 * 299.99857 * 11 10 9 33 33 H 1.09003 * 109.47537 * 59.99652 * 12 10 9 34 34 H 1.09003 * 109.47181 * 179.97438 * 12 10 9 35 35 H 1.09001 * 109.47295 * 299.99618 * 12 10 9 36 36 H 0.97003 * 120.00247 * 180.02562 * 16 15 13 37 37 H 1.08999 * 113.76875 * 221.15398 * 21 5 4 38 38 H 1.08996 * 113.86941 * 89.76767 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7290 1.6640 -1.3133 5 7 3.7843 2.2457 -0.4572 6 16 4.9357 3.4167 -0.6697 7 8 4.3974 4.2581 -1.6805 8 8 5.1802 3.9097 0.6405 9 6 6.3840 2.5197 -1.2928 10 6 7.5300 3.5048 -1.5321 11 6 7.0967 4.5510 -2.5609 12 6 7.8877 4.2001 -0.2171 13 6 8.7330 2.7595 -2.0504 14 1 8.6851 1.6903 -2.1942 15 6 9.8951 3.4427 -2.3399 16 7 9.9535 4.7447 -2.1642 17 14 11.3864 2.5190 -2.9815 18 1 11.0393 1.8444 -4.2581 19 1 12.4987 3.4751 -3.2139 20 1 11.8067 1.5031 -1.9833 21 6 3.3981 1.3660 0.6632 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.3231 2.0765 0.3488 26 1 3.0566 0.7962 -1.8858 27 1 2.1980 2.3986 -1.9185 28 1 6.6924 1.7740 -0.5602 29 1 6.1293 2.0246 -2.2300 30 1 6.2265 5.0901 -2.1865 31 1 7.9130 5.2531 -2.7310 32 1 6.8419 4.0557 -3.4978 33 1 8.1964 3.4546 0.5159 34 1 8.7045 4.9016 -0.3874 35 1 7.0175 4.7392 0.1574 36 1 10.7709 5.2255 -2.3682 37 1 3.4003 1.8634 1.6331 38 1 3.9218 0.4102 0.6742 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408458280.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:45 Heat of formation + Delta-G solvation = -101.363592 kcal Electronic energy + Delta-G solvation = -20688.529842 eV Core-core repulsion = 17466.126902 eV Total energy + Delta-G solvation = -3222.402940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51605 -38.15585 -38.13531 -37.36318 -36.92429 -33.65254 -29.43665 -28.22960 -27.72327 -27.28052 -27.25341 -26.83965 -22.18843 -21.29700 -19.65566 -18.85552 -18.02891 -17.90964 -17.26883 -16.85333 -16.72376 -16.09340 -15.85952 -15.27941 -14.88631 -14.65375 -14.55031 -14.45491 -13.87255 -13.71435 -13.50928 -13.16463 -13.10334 -12.88368 -12.82808 -12.54501 -12.51292 -12.26421 -12.20406 -12.15750 -12.07859 -11.97078 -11.59874 -11.41945 -10.70717 -10.51023 -10.43158 -10.00815 -8.04813 -6.23971 -0.71610 1.44452 1.44526 1.52182 1.65966 2.42957 2.79778 2.93938 3.06005 3.17655 3.47789 3.60234 4.01354 4.06245 4.07080 4.51970 4.56717 4.58413 4.60654 4.63360 4.69842 4.82693 4.82990 4.88223 4.90306 4.95812 4.97159 5.08207 5.34021 5.42322 5.48521 5.62015 5.94501 6.08674 6.25427 6.31794 6.80143 7.44304 8.94923 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033547 B = 0.004648 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.457968 B = 6022.177518 C = 6365.719707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.389 6.389 3 C 0.068 3.932 4 C 0.097 3.903 5 N -1.045 6.045 6 S 2.635 3.365 7 O -0.984 6.984 8 O -0.984 6.984 9 C -0.589 4.589 10 C 0.067 3.933 11 C -0.158 4.158 12 C -0.158 4.158 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 0.956 3.044 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.116 3.884 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.099 0.901 25 H 0.115 0.885 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.032 0.968 36 H 0.262 0.738 37 H 0.095 0.905 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.120 -9.593 3.755 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C 0.007 3.993 4 C -0.027 4.027 5 N -0.886 5.886 6 S 2.735 3.265 7 O -0.975 6.975 8 O -0.975 6.975 9 C -0.721 4.721 10 C 0.065 3.935 11 C -0.216 4.216 12 C -0.216 4.216 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.182 4.182 16 N -0.546 5.546 17 Si 0.782 3.218 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.008 4.008 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.117 0.883 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.892 -8.528 3.901 19.321 hybrid contribution 1.338 -0.455 -0.645 1.554 sum -15.554 -8.983 3.256 18.255 Atomic orbital electron populations 1.23049 0.79215 1.04085 1.01154 1.87924 1.21741 1.26581 1.94470 1.24204 0.93846 0.86186 0.95016 1.23620 0.85500 0.98245 0.95378 1.60124 1.48043 1.54922 1.25530 1.04189 0.74623 0.74183 0.73533 1.93490 1.77975 1.64527 1.61499 1.93492 1.85882 1.78309 1.39772 1.30556 1.16156 1.12845 1.12551 1.17949 0.91508 0.90993 0.93043 1.22191 0.99859 1.00405 0.99140 1.22192 1.01579 1.00972 0.96871 1.21258 0.96526 0.94143 1.44033 0.92067 1.25689 1.01201 0.95687 0.95578 1.69931 1.28099 1.07862 1.48731 0.85644 0.78875 0.78364 0.78932 1.19711 1.21153 1.19697 1.23220 0.92929 0.94046 0.90649 0.92945 0.92785 0.88296 0.86781 0.87825 0.88979 0.84959 0.85004 0.94923 0.90942 0.94217 0.94200 0.90937 0.94912 0.92836 0.88627 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.86 113.37 1.23 1.45 16 2 O -0.39 -6.62 10.73 -148.98 -1.60 -8.22 16 3 C 0.07 1.21 4.48 31.26 0.14 1.35 16 4 C 0.10 2.04 8.76 86.44 0.76 2.80 16 5 N -1.05 -28.59 4.00 -533.54 -2.13 -30.73 16 6 S 2.63 98.79 4.97 -56.49 -0.28 98.51 16 7 O -0.98 -41.72 15.64 -127.65 -2.00 -43.71 16 8 O -0.98 -41.68 15.65 -127.65 -2.00 -43.67 16 9 C -0.59 -23.14 5.12 71.98 0.37 -22.77 16 10 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 11 C -0.16 -8.00 7.77 71.98 0.56 -7.44 16 12 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 13 C -0.52 -27.62 8.01 25.60 0.21 -27.42 16 14 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 15 C 0.02 0.96 5.15 84.66 0.44 1.40 16 16 N -0.91 -50.77 9.35 21.45 0.20 -50.57 16 17 Si 0.96 42.51 29.54 68.60 2.03 44.53 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 C 0.12 2.45 8.75 86.49 0.76 3.21 16 22 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.11 1.68 7.89 -2.39 -0.02 1.66 16 26 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.13 4.71 8.14 -2.39 -0.02 4.69 16 29 H 0.13 4.70 8.14 -2.39 -0.02 4.68 16 30 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 31 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 32 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 3.98 6.07 -2.39 -0.01 3.97 16 35 H 0.03 1.58 5.47 -2.39 -0.01 1.56 16 36 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -68.33 314.95 0.25 -68.09 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.04 Total: 17.37 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 4.99 Total: -51.59 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.93 Total: -81.30 kcal Atomic # 8 Polarization: -90.01 SS G_CDS: -5.59 Total: -95.61 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 98.79 SS G_CDS: -0.28 Total: 98.51 kcal Total: -68.33 0.25 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408458280.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.278 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds