Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 C 1.50708 * 109.47004 * 240.00559 * 2 1 3 5 5 H 1.07999 * 119.99492 * 240.00031 * 4 2 1 6 6 C 1.37877 * 120.00114 * 59.99993 * 4 2 1 7 7 N 1.31512 * 119.99925 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99762 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46995 * 60.00218 * 8 6 4 10 10 H 1.48505 * 109.46808 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47318 * 299.99789 * 8 6 4 12 12 C 1.52998 * 109.47295 * 120.00250 * 2 1 3 13 13 S 1.81395 * 109.47062 * 300.00184 * 12 2 1 14 14 O 1.42096 * 110.54431 * 68.37458 * 13 12 2 15 15 O 1.42093 * 110.54171 * 291.61739 * 13 12 2 16 16 N 1.65607 * 104.44732 * 179.97438 * 13 12 2 17 17 C 1.47164 * 120.94478 * 269.93489 * 16 13 12 18 18 C 1.53300 * 108.37481 * 230.51658 * 17 16 13 19 19 O 1.42961 * 109.26618 * 307.77372 * 18 17 16 20 20 C 1.42967 * 114.16831 * 62.55217 * 19 18 17 21 21 C 1.47157 * 120.97883 * 89.99937 * 16 13 12 22 22 H 1.09001 * 109.46880 * 299.99906 * 1 2 3 23 23 H 1.08999 * 109.47029 * 59.99698 * 1 2 3 24 24 H 1.09003 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47304 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47389 * 300.00683 * 3 2 1 27 27 H 1.09002 * 109.46511 * 60.00259 * 3 2 1 28 28 H 0.96996 * 120.00197 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47334 * 179.97438 * 12 2 1 30 30 H 1.09003 * 109.46567 * 60.00168 * 12 2 1 31 31 H 1.08996 * 109.64217 * 110.82322 * 17 16 13 32 32 H 1.08999 * 109.72598 * 350.25974 * 17 16 13 33 33 H 1.09002 * 109.51290 * 187.82368 * 18 17 16 34 34 H 1.08997 * 109.51158 * 67.72466 * 18 17 16 35 35 H 1.09005 * 109.50496 * 57.34540 * 20 19 18 36 36 H 1.08995 * 109.51193 * 177.44508 * 20 19 18 37 37 H 1.09004 * 109.67827 * 9.71358 * 21 16 13 38 38 H 1.09000 * 109.68235 * 249.15740 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0081 9 1 1.8280 -2.5196 -4.0084 10 1 1.8269 -0.4195 -5.2205 11 1 3.8075 -1.1187 -4.0079 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1337 2.7303 14 8 0.0280 -0.0185 2.8543 15 8 2.0480 1.4098 2.8544 16 7 2.0531 -0.7411 3.9935 17 6 1.3039 -1.8683 4.5713 18 6 1.2492 -1.6833 6.0921 19 8 2.5733 -1.4779 6.5903 20 6 3.2097 -0.2985 6.0923 21 6 3.3660 -0.4131 4.5716 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9562 0.8901 28 1 0.7087 1.1615 -3.4843 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -1.7490 1.2490 31 1 1.8091 -2.8044 4.3333 32 1 0.2919 -1.8834 4.1667 33 1 0.8212 -2.5741 6.5521 34 1 0.6317 -0.8176 6.3315 35 1 2.5996 0.5727 6.3310 36 1 4.1918 -0.1926 6.5530 37 1 3.7190 0.5352 4.1663 38 1 4.0791 -1.2026 4.3343 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408458405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -112.967276 kcal Electronic energy + Delta-G solvation = -21240.099245 eV Core-core repulsion = 18017.193131 eV Total energy + Delta-G solvation = -3222.906114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.23175 -36.69368 -36.31021 -35.41091 -34.73461 -31.68915 -31.45047 -27.30729 -26.43010 -25.75306 -25.25279 -24.27751 -21.47772 -19.50234 -18.55194 -17.62265 -16.47270 -16.07286 -15.76529 -15.66294 -15.21374 -15.08906 -14.67634 -14.56427 -14.12469 -13.10143 -13.05593 -12.67578 -12.54079 -12.19983 -12.02432 -11.98085 -11.53613 -11.33297 -11.15710 -11.06281 -10.98920 -10.72974 -10.65114 -10.41245 -10.30620 -10.29885 -10.10327 -9.68743 -9.58611 -8.90360 -8.61684 -8.42515 -6.05797 -4.18097 0.74839 2.96778 3.25388 3.30952 3.32552 3.70975 4.28618 4.36566 4.50984 4.67734 4.77247 4.98652 5.13237 5.15772 5.20044 5.33135 5.44188 5.46556 5.62192 5.69014 5.70110 5.82512 6.05606 6.34252 6.54452 6.66940 6.75987 6.86740 6.97597 7.00278 7.27769 7.46792 7.65033 7.94670 8.06310 8.29988 8.80140 9.47427 10.95516 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036092 B = 0.005126 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.608243 B = 5461.035022 C = 5560.668325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.579 4.579 13 S 2.592 3.408 14 O -0.961 6.961 15 O -0.961 6.961 16 N -1.013 6.013 17 C 0.082 3.918 18 C 0.051 3.949 19 O -0.382 6.382 20 C 0.051 3.949 21 C 0.082 3.918 22 H 0.027 0.973 23 H 0.095 0.905 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.095 0.905 27 H 0.027 0.973 28 H 0.263 0.737 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -4.199 14.077 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 C -0.713 4.713 13 S 2.692 3.308 14 O -0.951 6.951 15 O -0.951 6.951 16 N -0.850 5.850 17 C -0.044 4.044 18 C -0.027 4.027 19 O -0.300 6.300 20 C -0.027 4.027 21 C -0.044 4.044 22 H 0.046 0.954 23 H 0.114 0.886 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.114 0.886 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.422 -3.424 14.192 14.799 hybrid contribution 0.635 -0.898 -1.399 1.780 sum 3.057 -4.322 12.793 13.845 Atomic orbital electron populations 1.22274 0.96887 1.00627 1.02321 1.17945 0.92854 0.92225 0.89081 1.22273 0.99712 0.97799 1.02317 1.20900 1.31843 1.12128 0.89389 0.92375 1.24938 0.94854 0.94976 0.98932 1.69786 1.36198 1.22560 1.23635 0.86585 0.79155 0.79708 0.82103 1.20267 1.21145 1.20262 1.30555 1.11252 1.12769 1.16730 1.05777 0.74657 0.75042 0.75351 1.93524 1.29404 1.86531 1.85676 1.93523 1.78132 1.37802 1.85677 1.58132 1.29088 1.47266 1.50507 1.22099 0.98038 0.89392 0.94882 1.22908 0.84392 1.02201 0.93237 1.87915 1.29058 1.44324 1.68723 1.22912 0.98634 0.87957 0.93236 1.22095 0.84606 1.02817 0.94882 0.95407 0.88616 0.94468 0.94470 0.88617 0.95415 0.92651 0.86431 0.86433 0.90759 0.87744 0.87816 0.92548 0.92547 0.87809 0.87765 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 4 C -0.50 -13.18 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.03 9.35 55.43 0.52 -23.51 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 C -0.58 -11.28 5.12 37.16 0.19 -11.09 16 13 S 2.59 47.87 4.50 -107.50 -0.48 47.38 16 14 O -0.96 -19.75 14.23 -57.54 -0.82 -20.57 16 15 O -0.96 -19.75 14.24 -57.54 -0.82 -20.57 16 16 N -1.01 -14.52 3.27 -113.04 -0.37 -14.89 16 17 C 0.08 0.99 6.67 -3.52 -0.02 0.97 16 18 C 0.05 0.55 6.98 37.31 0.26 0.81 16 19 O -0.38 -4.57 10.74 -35.23 -0.38 -4.95 16 20 C 0.05 0.55 6.99 37.31 0.26 0.81 16 21 C 0.08 0.99 6.67 -3.53 -0.02 0.97 16 22 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 23 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 24 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 27 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 30 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.10 1.28 6.88 -51.93 -0.36 0.93 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.28 6.88 -51.93 -0.36 0.92 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -31.39 303.16 -7.69 -39.08 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.68 Total: 2.84 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 0.79 Total: -24.91 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.15 Total: -38.40 kcal Atomic # 8 Polarization: -44.07 SS G_CDS: -2.02 Total: -46.09 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 47.87 SS G_CDS: -0.48 Total: 47.38 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.39 -7.69 -39.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408458405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.883 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds