Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47392 * 2 1 4 4 C 1.50708 * 109.47004 * 240.00559 * 2 1 3 5 5 H 1.07999 * 119.99492 * 240.00031 * 4 2 1 6 6 C 1.37877 * 120.00114 * 59.99993 * 4 2 1 7 7 N 1.31512 * 119.99925 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99762 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46995 * 60.00218 * 8 6 4 10 10 H 1.48505 * 109.46808 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47318 * 299.99789 * 8 6 4 12 12 C 1.52998 * 109.47295 * 120.00250 * 2 1 3 13 13 S 1.81395 * 109.47062 * 300.00184 * 12 2 1 14 14 O 1.42096 * 110.54431 * 68.37458 * 13 12 2 15 15 O 1.42093 * 110.54171 * 291.61739 * 13 12 2 16 16 N 1.65607 * 104.44732 * 179.97438 * 13 12 2 17 17 C 1.47164 * 120.94478 * 269.93489 * 16 13 12 18 18 C 1.53300 * 108.37481 * 230.51658 * 17 16 13 19 19 O 1.42961 * 109.26618 * 307.77372 * 18 17 16 20 20 C 1.42967 * 114.16831 * 62.55217 * 19 18 17 21 21 C 1.47157 * 120.97883 * 89.99937 * 16 13 12 22 22 H 1.09001 * 109.46880 * 299.99906 * 1 2 3 23 23 H 1.08999 * 109.47029 * 59.99698 * 1 2 3 24 24 H 1.09003 * 109.47176 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47304 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47389 * 300.00683 * 3 2 1 27 27 H 1.09002 * 109.46511 * 60.00259 * 3 2 1 28 28 H 0.96996 * 120.00197 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47334 * 179.97438 * 12 2 1 30 30 H 1.09003 * 109.46567 * 60.00168 * 12 2 1 31 31 H 1.08996 * 109.64217 * 110.82322 * 17 16 13 32 32 H 1.08999 * 109.72598 * 350.25974 * 17 16 13 33 33 H 1.09002 * 109.51290 * 187.82368 * 18 17 16 34 34 H 1.08997 * 109.51158 * 67.72466 * 18 17 16 35 35 H 1.09005 * 109.50496 * 57.34540 * 20 19 18 36 36 H 1.08995 * 109.51193 * 177.44508 * 20 19 18 37 37 H 1.09004 * 109.67827 * 9.71358 * 21 16 13 38 38 H 1.09000 * 109.68235 * 249.15740 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0081 9 1 1.8280 -2.5196 -4.0084 10 1 1.8269 -0.4195 -5.2205 11 1 3.8075 -1.1187 -4.0079 12 6 2.0400 -0.7213 1.2492 13 16 1.4353 0.1337 2.7303 14 8 0.0280 -0.0185 2.8543 15 8 2.0480 1.4098 2.8544 16 7 2.0531 -0.7411 3.9935 17 6 1.3039 -1.8683 4.5713 18 6 1.2492 -1.6833 6.0921 19 8 2.5733 -1.4779 6.5903 20 6 3.2097 -0.2985 6.0923 21 6 3.3660 -0.4131 4.5716 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9562 0.8901 28 1 0.7087 1.1615 -3.4843 29 1 3.1300 -0.7217 1.2490 30 1 1.6767 -1.7490 1.2490 31 1 1.8091 -2.8044 4.3333 32 1 0.2919 -1.8834 4.1667 33 1 0.8212 -2.5741 6.5521 34 1 0.6317 -0.8176 6.3315 35 1 2.5996 0.5727 6.3310 36 1 4.1918 -0.1926 6.5530 37 1 3.7190 0.5352 4.1663 38 1 4.0791 -1.2026 4.3343 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408458405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = -135.101873 kcal Electronic energy + Delta-G solvation = -21241.059073 eV Core-core repulsion = 18017.193131 eV Total energy + Delta-G solvation = -3223.865942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13763 -38.23463 -38.14956 -36.95699 -35.77798 -33.64645 -32.33072 -28.61901 -27.77462 -27.71727 -27.26249 -25.17436 -22.46677 -21.32243 -19.82407 -19.02665 -17.94652 -17.51459 -17.03412 -16.87911 -16.77943 -16.16350 -15.96552 -15.77982 -15.33345 -14.74834 -14.70927 -14.44759 -13.93884 -13.55098 -13.54943 -13.12019 -12.96080 -12.89241 -12.81240 -12.67642 -12.50219 -12.33644 -12.18169 -12.14491 -11.99984 -11.59684 -11.58968 -11.31907 -11.22427 -10.65323 -10.42560 -9.79255 -8.04308 -6.23378 -0.70080 1.44910 1.45208 1.52575 1.69680 2.43357 2.84488 2.91276 3.14988 3.19528 3.63263 3.85138 4.03674 4.09406 4.17970 4.26961 4.29571 4.44796 4.57414 4.66441 4.67799 4.80991 4.83819 4.84160 4.94866 4.98269 5.05134 5.09890 5.35961 5.45882 5.54359 5.62700 5.95220 6.09303 6.13722 6.32277 6.80983 7.45081 8.95344 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.036092 B = 0.005126 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.608243 B = 5461.035022 C = 5560.668325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.068 3.932 3 C -0.159 4.159 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.272 1.272 12 C -0.584 4.584 13 S 2.610 3.390 14 O -0.985 6.985 15 O -0.986 6.986 16 N -1.008 6.008 17 C 0.072 3.928 18 C 0.049 3.951 19 O -0.389 6.389 20 C 0.049 3.951 21 C 0.072 3.928 22 H 0.032 0.968 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 -5.783 15.258 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 C -0.217 4.217 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.716 4.716 13 S 2.709 3.291 14 O -0.976 6.976 15 O -0.976 6.976 16 N -0.847 5.847 17 C -0.053 4.053 18 C -0.029 4.029 19 O -0.307 6.307 20 C -0.029 4.029 21 C -0.053 4.053 22 H 0.051 0.949 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.151 0.849 37 H 0.118 0.882 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.546 -5.012 15.364 16.545 hybrid contribution 0.294 -0.415 -1.683 1.758 sum 3.839 -5.427 13.682 15.211 Atomic orbital electron populations 1.22199 0.97674 1.00493 1.01323 1.17943 0.92412 0.92185 0.90901 1.22199 0.99827 0.98339 1.01318 1.21257 1.31806 1.12349 0.90429 0.91982 1.25678 0.95129 0.95640 1.01674 1.69932 1.37072 1.23664 1.23967 0.85663 0.78743 0.78724 0.78793 1.19711 1.21260 1.19700 1.30494 1.12361 1.13267 1.15525 1.04923 0.73922 0.74696 0.75520 1.93484 1.31110 1.86886 1.86100 1.93483 1.78432 1.39565 1.86101 1.57801 1.30231 1.47657 1.49053 1.22401 0.97884 0.89303 0.95684 1.23050 0.84137 1.03351 0.92343 1.87912 1.29413 1.44607 1.68813 1.23053 1.00014 0.87469 0.92345 1.22398 0.83709 1.03472 0.95681 0.94912 0.91062 0.94088 0.94086 0.91063 0.94920 0.92874 0.84773 0.84777 0.88559 0.88219 0.84889 0.93235 0.93237 0.84880 0.88236 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 7.78 71.98 0.56 -7.31 16 2 C 0.07 3.25 0.52 -52.93 -0.03 3.23 16 3 C -0.16 -7.87 7.78 71.98 0.56 -7.31 16 4 C -0.52 -26.96 8.01 25.60 0.21 -26.75 16 5 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 6 C 0.02 0.97 5.15 84.65 0.44 1.40 16 7 N -0.91 -50.15 9.35 21.45 0.20 -49.95 16 8 Si 0.95 41.88 29.54 68.60 2.03 43.91 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 C -0.58 -21.97 5.12 71.98 0.37 -21.60 16 13 S 2.61 93.83 4.50 -56.49 -0.25 93.57 16 14 O -0.99 -39.98 14.23 -127.65 -1.82 -41.80 16 15 O -0.99 -39.99 14.24 -127.65 -1.82 -41.80 16 16 N -1.01 -26.83 3.27 -511.56 -1.67 -28.50 16 17 C 0.07 1.57 6.67 86.35 0.58 2.15 16 18 C 0.05 0.94 6.98 72.08 0.50 1.44 16 19 O -0.39 -8.14 10.74 -148.98 -1.60 -9.74 16 20 C 0.05 0.94 6.99 72.08 0.50 1.44 16 21 C 0.07 1.57 6.67 86.35 0.58 2.15 16 22 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 23 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 27 H 0.03 1.54 5.46 -2.39 -0.01 1.52 16 28 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.13 4.52 8.14 -2.39 -0.02 4.50 16 30 H 0.13 4.52 8.14 -2.39 -0.02 4.50 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 2.27 6.88 -2.39 -0.02 2.26 16 33 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.00 8.14 -2.38 -0.02 0.99 16 36 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 2.27 6.88 -2.38 -0.02 2.25 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -66.55 303.16 0.37 -66.18 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 1.05 Total: 19.30 kcal Atomic # 6 Polarization: -55.44 SS G_CDS: 4.26 Total: -51.17 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.47 Total: -78.45 kcal Atomic # 8 Polarization: -88.11 SS G_CDS: -5.23 Total: -93.34 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 93.83 SS G_CDS: -0.25 Total: 93.57 kcal Total: -66.55 0.37 -66.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408458405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.919 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds