Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47206 * 2 1 4 4 C 1.50706 * 109.46708 * 119.99475 * 2 1 3 5 5 H 1.08000 * 119.99302 * 120.00101 * 4 2 1 6 6 C 1.37871 * 120.00436 * 299.72635 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 C 1.52998 * 109.47322 * 239.99620 * 2 1 3 13 13 S 1.81399 * 109.47108 * 59.99946 * 12 2 1 14 14 O 1.42097 * 110.54529 * 291.62590 * 13 12 2 15 15 O 1.42100 * 110.53974 * 68.37575 * 13 12 2 16 16 N 1.65599 * 104.44808 * 180.02562 * 13 12 2 17 17 C 1.47144 * 120.87251 * 90.00279 * 16 13 12 18 18 C 1.53392 * 108.21584 * 129.39815 * 17 16 13 19 19 C 1.53146 * 108.94071 * 51.83038 * 18 17 16 20 20 O 1.42923 * 109.51668 * 300.93657 * 19 18 17 21 21 C 1.42685 * 114.05125 * 62.32747 * 20 19 18 22 22 H 1.09005 * 109.47120 * 300.00628 * 1 2 3 23 23 H 1.09002 * 109.46792 * 60.00402 * 1 2 3 24 24 H 1.09002 * 109.47539 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47000 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46917 * 299.99521 * 3 2 1 27 27 H 1.08995 * 109.47505 * 59.99814 * 3 2 1 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.46986 * 180.02562 * 12 2 1 30 30 H 1.09002 * 109.46857 * 300.00471 * 12 2 1 31 31 H 1.08998 * 109.71934 * 249.08202 * 17 16 13 32 32 H 1.09010 * 109.71313 * 9.68182 * 17 16 13 33 33 H 1.09002 * 109.56125 * 171.66556 * 18 17 16 34 34 H 1.09000 * 109.56187 * 291.88566 * 18 17 16 35 35 H 1.08998 * 109.46256 * 60.95451 * 19 18 17 36 36 H 1.09002 * 109.46369 * 180.92109 * 19 18 17 37 37 H 1.09002 * 109.54538 * 184.76855 * 21 20 19 38 38 H 1.09007 * 109.43125 * 64.42726 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.7038 -0.2360 2.4828 7 7 0.9526 0.8368 2.6033 8 14 2.3270 -1.1160 4.0081 9 1 3.6381 -0.5451 4.4081 10 1 1.3520 -0.9398 5.1142 11 1 2.4860 -2.5630 3.7144 12 6 2.0400 -0.7213 -1.2492 13 16 1.4354 0.1337 -2.7304 14 8 0.0280 -0.0185 -2.8544 15 8 2.0480 1.4098 -2.8544 16 7 2.0531 -0.7411 -3.9935 17 6 1.3032 -1.8687 -4.5691 18 6 1.2468 -1.6804 -6.0904 19 6 2.6667 -1.4496 -6.6157 20 8 3.2256 -0.2930 -5.9890 21 6 3.3623 -0.4076 -4.5733 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.7218 1.1708 3.4843 29 1 3.1300 -0.7217 -1.2489 30 1 1.6766 -1.7490 -1.2491 31 1 1.8086 -2.8052 -4.3330 32 1 0.2921 -1.8839 -4.1621 33 1 0.8271 -2.5735 -6.5534 34 1 0.6234 -0.8186 -6.3285 35 1 3.2835 -2.3192 -6.3892 36 1 2.6347 -1.2983 -7.6947 37 1 3.7135 0.5393 -4.1631 38 1 4.0770 -1.1971 -4.3408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408459184.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = -136.767440 kcal Electronic energy + Delta-G solvation = -21249.238440 eV Core-core repulsion = 18025.300274 eV Total energy + Delta-G solvation = -3223.938166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.19685 -38.23129 -38.13921 -36.93492 -35.55491 -33.63441 -33.04265 -28.39051 -27.70302 -27.25436 -26.67244 -26.19256 -22.26456 -21.32010 -19.86780 -19.03987 -17.94077 -17.80809 -17.01919 -16.79678 -16.72025 -16.23174 -15.92004 -15.64665 -15.14585 -14.71409 -14.58040 -14.43602 -14.14557 -13.81728 -13.51153 -13.07029 -12.94360 -12.89367 -12.77459 -12.52564 -12.31747 -12.26187 -12.12504 -12.09321 -11.98351 -11.84127 -11.57480 -11.41498 -10.89166 -10.60184 -10.41753 -10.10200 -8.03031 -6.22011 -0.71263 1.44861 1.46713 1.55231 1.71532 2.44551 2.81176 2.94680 3.16292 3.20996 3.63678 3.94930 3.96928 4.06655 4.13912 4.30598 4.37149 4.47173 4.58729 4.60648 4.74645 4.84759 4.85652 4.92763 4.97774 5.04433 5.07484 5.22142 5.37640 5.44662 5.52533 5.64455 5.96267 6.10563 6.11724 6.33225 6.82904 7.46596 8.96898 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.035924 B = 0.005152 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.234179 B = 5433.752159 C = 5535.096041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 C -0.161 4.161 4 C -0.516 4.516 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.578 4.578 13 S 2.609 3.391 14 O -0.987 6.987 15 O -0.989 6.989 16 N -1.025 6.025 17 C 0.098 3.902 18 C -0.165 4.165 19 C 0.053 3.947 20 O -0.407 6.407 21 C 0.280 3.720 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.261 0.739 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 -8.654 -15.251 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 C -0.218 4.218 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.190 1.190 12 C -0.712 4.712 13 S 2.708 3.292 14 O -0.977 6.977 15 O -0.980 6.980 16 N -0.871 5.871 17 C -0.026 4.026 18 C -0.204 4.204 19 C -0.023 4.023 20 O -0.322 6.322 21 C 0.118 3.882 22 H 0.088 0.912 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.796 -7.593 -15.404 17.588 hybrid contribution 0.247 -0.639 1.526 1.673 sum 4.043 -8.232 -13.878 16.635 Atomic orbital electron populations 1.22200 0.97737 1.00549 1.01217 1.17951 0.92386 0.92164 0.90959 1.22215 0.99917 0.98422 1.01285 1.21284 1.31736 1.12260 0.90265 0.91699 1.25688 0.95161 0.95634 1.01732 1.69950 1.37418 1.23513 1.23863 0.85594 0.77877 0.79229 0.79138 1.20388 1.21369 1.19049 1.30463 1.12605 1.13319 1.14764 1.04987 0.73940 0.74552 0.75754 1.93480 1.31281 1.86783 1.86184 1.93488 1.78426 1.39842 1.86215 1.58464 1.31460 1.47523 1.49659 1.21868 0.97348 0.88674 0.94713 1.22510 0.98713 1.04139 0.95081 1.22827 0.92890 0.88199 0.98396 1.87929 1.82614 1.41700 1.19992 1.22814 0.82904 1.02891 0.79616 0.91177 0.95051 0.93923 0.93955 0.95076 0.91049 0.92941 0.84274 0.84293 0.87916 0.89391 0.86428 0.92635 0.90433 0.87026 0.87208 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 7.78 71.98 0.56 -7.31 16 2 C 0.07 3.22 0.52 -52.93 -0.03 3.19 16 3 C -0.16 -7.96 7.77 71.98 0.56 -7.40 16 4 C -0.52 -26.45 8.01 25.60 0.21 -26.24 16 5 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.90 5.15 84.65 0.44 1.34 16 7 N -0.91 -50.14 9.35 21.45 0.20 -49.94 16 8 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 C -0.58 -21.27 5.12 71.98 0.37 -20.90 16 13 S 2.61 95.50 4.50 -56.49 -0.25 95.25 16 14 O -0.99 -41.08 14.22 -127.65 -1.82 -42.89 16 15 O -0.99 -41.75 14.22 -127.65 -1.81 -43.56 16 16 N -1.02 -27.75 3.34 -629.23 -2.10 -29.85 16 17 C 0.10 2.06 6.55 86.39 0.57 2.63 16 18 C -0.17 -2.86 6.32 30.77 0.19 -2.67 16 19 C 0.05 0.86 6.80 72.03 0.49 1.35 16 20 O -0.41 -9.91 10.84 -148.98 -1.61 -11.53 16 21 C 0.28 6.67 7.42 127.67 0.95 7.61 16 22 H 0.07 3.80 6.09 -2.38 -0.01 3.78 16 23 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.03 1.48 5.46 -2.39 -0.01 1.47 16 27 H 0.07 3.88 6.05 -2.39 -0.01 3.86 16 28 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 30 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 2.07 6.87 -2.38 -0.02 2.05 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 2.88 6.86 -2.39 -0.02 2.86 16 38 H 0.10 1.62 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -68.49 303.03 -0.03 -68.52 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.05 Total: 18.77 kcal Atomic # 6 Polarization: -52.70 SS G_CDS: 4.30 Total: -48.40 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.90 Total: -79.79 kcal Atomic # 8 Polarization: -92.74 SS G_CDS: -5.25 Total: -97.98 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 95.50 SS G_CDS: -0.25 Total: 95.25 kcal Total: -68.49 -0.03 -68.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408459184.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.245 kcal (2) G-P(sol) polarization free energy of solvation -68.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds