Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.32749 * 2 1 4 4 C 1.54478 * 110.37287 * 237.75010 * 2 1 3 5 5 C 1.54509 * 104.06361 * 217.18668 * 4 2 1 6 6 C 1.54486 * 104.06282 * 0.02562 * 5 4 2 7 7 H 1.08997 * 110.36688 * 265.03995 * 6 5 4 8 8 C 1.52992 * 110.37490 * 142.80626 * 6 5 4 9 9 N 1.46497 * 109.46987 * 180.02562 * 8 6 5 10 10 S 1.65605 * 119.99725 * 165.00288 * 9 8 6 11 11 O 1.42102 * 104.27370 * 181.06924 * 10 9 8 12 12 O 1.42097 * 104.27773 * 308.92553 * 10 9 8 13 13 C 1.81403 * 104.44879 * 65.00030 * 10 9 8 14 14 C 1.53001 * 109.46802 * 179.97438 * 13 10 9 15 15 C 1.50704 * 109.47150 * 180.02562 * 14 13 10 16 16 H 1.07995 * 119.99634 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99673 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46753 * 89.99880 * 19 17 15 21 21 H 1.48502 * 109.46998 * 209.99825 * 19 17 15 22 22 H 1.48498 * 109.47171 * 329.99901 * 19 17 15 23 23 O 1.44426 * 110.37303 * 122.24941 * 2 1 3 24 24 H 1.09001 * 109.47002 * 180.69865 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.70303 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.70132 * 1 2 3 27 27 H 1.09003 * 110.51402 * 335.83363 * 4 2 1 28 28 H 1.09005 * 110.51086 * 98.40377 * 4 2 1 29 29 H 1.08999 * 110.50981 * 118.64265 * 5 4 2 30 30 H 1.08991 * 110.51198 * 241.22178 * 5 4 2 31 31 H 1.08998 * 109.46974 * 300.00250 * 8 6 5 32 32 H 1.08998 * 109.46927 * 59.99843 * 8 6 5 33 33 H 0.96997 * 120.00219 * 345.00093 * 9 8 6 34 34 H 1.08994 * 109.47055 * 299.99581 * 13 10 9 35 35 H 1.08995 * 109.47638 * 60.00048 * 13 10 9 36 36 H 1.09003 * 109.47222 * 299.99675 * 14 13 10 37 37 H 1.09002 * 109.47222 * 59.99960 * 14 13 10 38 38 H 0.96997 * 120.00282 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2247 5 6 3.3179 -1.5049 -0.6875 6 6 3.3871 -1.0884 0.7986 7 1 4.0535 -0.2348 0.9226 8 6 3.8599 -2.2617 1.6591 9 7 3.9177 -1.8457 3.0626 10 16 4.0330 -2.9843 4.2596 11 8 4.0391 -2.2283 5.4628 12 8 2.9840 -3.8996 3.9748 13 6 5.6487 -3.7634 3.9891 14 6 5.8758 -4.8465 5.0455 15 6 7.2183 -5.4934 4.8212 16 1 7.8464 -5.1651 4.0064 17 6 7.6441 -6.5051 5.6557 18 7 6.8790 -6.9052 6.6476 19 14 9.3080 -7.3073 5.3771 20 1 10.3458 -6.5740 6.1454 21 1 9.2593 -8.7195 5.8340 22 1 9.6414 -7.2662 3.9307 23 8 2.0329 -0.7225 1.1451 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8836 26 1 -0.3633 0.5029 -0.8962 27 1 1.3277 -1.4903 -1.5788 28 1 2.3407 -0.0819 -2.0226 29 1 3.1956 -2.5844 -0.7758 30 1 4.2106 -1.1777 -1.2203 31 1 3.1622 -3.0927 1.5553 32 1 4.8508 -2.5762 1.3318 33 1 3.8884 -0.9034 3.2908 34 1 5.6737 -4.2127 2.9964 35 1 6.4328 -3.0104 4.0669 36 1 5.8509 -4.3968 6.0382 37 1 5.0916 -5.5997 4.9681 38 1 7.1787 -7.6167 7.2349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416528063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = -139.013493 kcal Electronic energy + Delta-G solvation = -19795.653017 eV Core-core repulsion = 16571.617455 eV Total energy + Delta-G solvation = -3224.035562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.85207 -36.52450 -35.43461 -35.18545 -33.87179 -32.48794 -31.65191 -31.14072 -27.60409 -25.58108 -23.78271 -21.84685 -21.61685 -21.10388 -18.83744 -17.43390 -16.89275 -16.60646 -16.11276 -16.01603 -15.33525 -14.99008 -14.53788 -14.36452 -14.05894 -13.71151 -13.28837 -13.00940 -12.58478 -12.46170 -12.27202 -12.18178 -11.79353 -11.72595 -11.51449 -11.42828 -11.13190 -11.07419 -10.99347 -10.93904 -10.88990 -10.39667 -10.36298 -9.95501 -9.77676 -9.45729 -8.98328 -8.49244 -6.11203 -4.16830 0.85342 3.17806 3.26611 3.32730 3.35349 3.56425 4.24531 4.30490 4.37078 4.42612 4.61659 4.67771 4.80498 4.92934 4.98752 5.08906 5.19530 5.23901 5.26915 5.45516 5.48338 5.50443 5.65170 5.69716 5.71324 5.78233 5.80498 5.89906 6.02826 6.51099 6.68462 7.17254 7.32511 7.38977 7.81635 8.19018 8.86603 9.47787 10.99861 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.003677 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.578646 B = 7612.318219 C = 8150.143579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.067 0.933 4 C -0.150 4.150 5 C -0.151 4.151 6 C 0.070 3.930 7 H 0.076 0.924 8 C 0.122 3.878 9 N -1.123 6.123 10 S 2.595 3.405 11 O -0.968 6.968 12 O -0.966 6.966 13 C -0.591 4.591 14 C 0.027 3.973 15 C -0.521 4.521 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.359 6.359 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.414 0.586 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 13.964 -16.931 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.085 0.915 4 C -0.188 4.188 5 C -0.190 4.190 6 C 0.010 3.990 7 H 0.094 0.906 8 C -0.005 4.005 9 N -0.880 5.880 10 S 2.692 3.308 11 O -0.958 6.958 12 O -0.956 6.956 13 C -0.724 4.724 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 O -0.278 6.278 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.247 0.753 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.394 13.433 -15.981 22.502 hybrid contribution 1.633 -0.021 -0.607 1.742 sum -6.761 13.413 -16.588 22.378 Atomic orbital electron populations 1.21805 0.93216 1.03135 1.02307 1.22991 0.95471 0.95390 0.85274 0.91515 1.23000 0.97757 0.99813 0.98260 1.22959 0.98733 1.02209 0.95059 1.23186 0.85408 0.96922 0.93437 0.90622 1.21379 1.01363 0.97114 0.80634 1.55663 1.92169 1.22023 1.18185 1.05496 0.78289 0.74037 0.72987 1.93549 1.88146 1.69936 1.44182 1.93538 1.52943 1.64838 1.84245 1.30462 1.19293 1.12052 1.10613 1.18966 0.99528 0.91171 0.91517 1.21009 1.01783 1.18780 1.14427 0.92061 1.25073 0.97710 0.96719 0.95016 1.69953 1.37018 1.28948 1.16904 0.86468 0.83648 0.78639 0.78503 1.20488 1.21018 1.19779 1.89278 1.26535 1.74341 1.37654 0.91605 0.91803 0.91316 0.90393 0.90611 0.89911 0.90102 0.89424 0.90327 0.75321 0.86404 0.86121 0.94810 0.94783 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.52 37.16 0.35 -0.80 16 2 C 0.07 0.58 3.92 -25.95 -0.10 0.48 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.15 -1.06 6.63 -25.16 -0.17 -1.23 16 5 C -0.15 -1.14 6.63 -25.16 -0.17 -1.31 16 6 C 0.07 0.68 3.35 -25.96 -0.09 0.60 16 7 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 8 C 0.12 1.41 5.75 -4.05 -0.02 1.38 16 9 N -1.12 -15.38 5.85 -10.62 -0.06 -15.44 16 10 S 2.59 47.73 5.46 -107.50 -0.59 47.14 16 11 O -0.97 -20.76 18.08 -57.54 -1.04 -21.81 16 12 O -0.97 -20.82 17.50 -57.54 -1.01 -21.82 16 13 C -0.59 -11.28 6.01 37.16 0.22 -11.06 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 19 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 O -0.36 -4.33 11.01 -35.23 -0.39 -4.72 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.11 7.69 -51.93 -0.40 0.71 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.41 5.01 8.62 -34.47 -0.30 4.72 16 34 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -35.99 329.20 -9.05 -45.05 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.13 Total: 0.92 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -0.52 Total: -24.58 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.67 Total: -41.33 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -2.43 Total: -48.35 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 47.73 SS G_CDS: -0.59 Total: 47.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.99 -9.05 -45.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.967 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds