Wall clock time and date at job start Mon Mar 30 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 110.32749 * 2 1 4 4 C 1.54478 * 110.37287 * 237.75010 * 2 1 3 5 5 C 1.54509 * 104.06361 * 217.18668 * 4 2 1 6 6 C 1.54486 * 104.06282 * 0.02562 * 5 4 2 7 7 H 1.08997 * 110.36688 * 265.03995 * 6 5 4 8 8 C 1.52992 * 110.37490 * 142.80626 * 6 5 4 9 9 N 1.46497 * 109.46987 * 180.02562 * 8 6 5 10 10 S 1.65605 * 119.99725 * 165.00288 * 9 8 6 11 11 O 1.42102 * 104.27370 * 181.06924 * 10 9 8 12 12 O 1.42097 * 104.27773 * 308.92553 * 10 9 8 13 13 C 1.81403 * 104.44879 * 65.00030 * 10 9 8 14 14 C 1.53001 * 109.46802 * 179.97438 * 13 10 9 15 15 C 1.50704 * 109.47150 * 180.02562 * 14 13 10 16 16 H 1.07995 * 119.99634 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99991 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99673 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46753 * 89.99880 * 19 17 15 21 21 H 1.48502 * 109.46998 * 209.99825 * 19 17 15 22 22 H 1.48498 * 109.47171 * 329.99901 * 19 17 15 23 23 O 1.44426 * 110.37303 * 122.24941 * 2 1 3 24 24 H 1.09001 * 109.47002 * 180.69865 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.70303 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.70132 * 1 2 3 27 27 H 1.09003 * 110.51402 * 335.83363 * 4 2 1 28 28 H 1.09005 * 110.51086 * 98.40377 * 4 2 1 29 29 H 1.08999 * 110.50981 * 118.64265 * 5 4 2 30 30 H 1.08991 * 110.51198 * 241.22178 * 5 4 2 31 31 H 1.08998 * 109.46974 * 300.00250 * 8 6 5 32 32 H 1.08998 * 109.46927 * 59.99843 * 8 6 5 33 33 H 0.96997 * 120.00219 * 345.00093 * 9 8 6 34 34 H 1.08994 * 109.47055 * 299.99581 * 13 10 9 35 35 H 1.08995 * 109.47638 * 60.00048 * 13 10 9 36 36 H 1.09003 * 109.47222 * 299.99675 * 14 13 10 37 37 H 1.09002 * 109.47222 * 59.99960 * 14 13 10 38 38 H 0.96997 * 120.00282 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7728 -1.2247 5 6 3.3179 -1.5049 -0.6875 6 6 3.3871 -1.0884 0.7986 7 1 4.0535 -0.2348 0.9226 8 6 3.8599 -2.2617 1.6591 9 7 3.9177 -1.8457 3.0626 10 16 4.0330 -2.9843 4.2596 11 8 4.0391 -2.2283 5.4628 12 8 2.9840 -3.8996 3.9748 13 6 5.6487 -3.7634 3.9891 14 6 5.8758 -4.8465 5.0455 15 6 7.2183 -5.4934 4.8212 16 1 7.8464 -5.1651 4.0064 17 6 7.6441 -6.5051 5.6557 18 7 6.8790 -6.9052 6.6476 19 14 9.3080 -7.3073 5.3771 20 1 10.3458 -6.5740 6.1454 21 1 9.2593 -8.7195 5.8340 22 1 9.6414 -7.2662 3.9307 23 8 2.0329 -0.7225 1.1451 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8836 26 1 -0.3633 0.5029 -0.8962 27 1 1.3277 -1.4903 -1.5788 28 1 2.3407 -0.0819 -2.0226 29 1 3.1956 -2.5844 -0.7758 30 1 4.2106 -1.1777 -1.2203 31 1 3.1622 -3.0927 1.5553 32 1 4.8508 -2.5762 1.3318 33 1 3.8884 -0.9034 3.2908 34 1 5.6737 -4.2127 2.9964 35 1 6.4328 -3.0104 4.0669 36 1 5.8509 -4.3968 6.0382 37 1 5.0916 -5.5997 4.9681 38 1 7.1787 -7.6167 7.2349 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416528063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:49 Heat of formation + Delta-G solvation = -167.185158 kcal Electronic energy + Delta-G solvation = -19796.874632 eV Core-core repulsion = 16571.617455 eV Total energy + Delta-G solvation = -3225.257177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54941 -38.14700 -37.00708 -36.27142 -35.88144 -33.16246 -33.10698 -32.38718 -28.40139 -27.57995 -24.51384 -23.60108 -22.48128 -21.79122 -20.25652 -19.07865 -18.28297 -17.73453 -17.21086 -17.06365 -16.73216 -16.51644 -16.21754 -15.38761 -15.00932 -14.68270 -14.52872 -14.36507 -13.75400 -13.71124 -13.53232 -13.19097 -13.09252 -13.08845 -12.91953 -12.82876 -12.76368 -12.49092 -12.22792 -12.12036 -11.88927 -11.73646 -11.70216 -11.46255 -11.17377 -10.67233 -10.63763 -10.34102 -8.24811 -6.39065 -0.66216 1.42060 1.44122 1.55185 1.87417 2.39220 2.81848 2.89642 3.08734 3.28931 3.63265 3.75004 3.99948 4.04016 4.06958 4.16405 4.22271 4.32908 4.43247 4.57006 4.59718 4.70707 4.77828 4.84473 4.98960 5.01256 5.08492 5.19576 5.25119 5.28768 5.29659 5.29935 5.69621 6.01366 6.06961 6.14426 6.75092 7.31222 8.87614 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032680 B = 0.003677 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.578646 B = 7612.318219 C = 8150.143579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.149 4.149 6 C 0.066 3.934 7 H 0.094 0.906 8 C 0.108 3.892 9 N -1.106 6.106 10 S 2.618 3.382 11 O -1.003 7.003 12 O -1.001 7.001 13 C -0.584 4.584 14 C 0.018 3.982 15 C -0.538 4.538 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.976 3.024 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.255 1.255 23 O -0.396 6.396 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.423 0.577 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.005 0.995 37 H 0.006 0.994 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 15.038 -19.624 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.000 4.000 3 H 0.096 0.904 4 C -0.184 4.184 5 C -0.187 4.187 6 C 0.007 3.993 7 H 0.112 0.888 8 C -0.018 4.018 9 N -0.867 5.867 10 S 2.716 3.284 11 O -0.993 6.993 12 O -0.991 6.991 13 C -0.716 4.716 14 C -0.021 4.021 15 C -0.577 4.577 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.575 5.575 19 Si 0.799 3.201 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.179 1.179 23 O -0.316 6.316 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.259 0.741 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.759 14.525 -18.687 24.614 hybrid contribution 1.049 -0.294 0.192 1.106 sum -5.710 14.231 -18.495 24.025 Atomic orbital electron populations 1.21837 0.93126 1.02497 1.03025 1.23227 0.95738 0.95945 0.85109 0.90357 1.23004 0.97427 0.99980 0.98020 1.22992 0.99985 1.02186 0.93571 1.23334 0.84891 0.96726 0.94301 0.88838 1.21768 1.03000 0.97739 0.79269 1.55164 1.91667 1.21498 1.18408 1.04475 0.77475 0.73721 0.72767 1.93493 1.88406 1.70630 1.46766 1.93492 1.54328 1.66470 1.84835 1.30309 1.20615 1.10926 1.09768 1.18843 0.98445 0.92413 0.92399 1.21539 1.02604 1.18836 1.14741 0.90305 1.26152 1.02094 0.97541 0.94632 1.70109 1.39422 1.29812 1.18200 0.85285 0.78248 0.77226 0.79315 1.19679 1.21001 1.17898 1.89246 1.27789 1.75020 1.39560 0.92845 0.92773 0.88977 0.90603 0.88400 0.90226 0.87736 0.91045 0.87104 0.74058 0.83582 0.83560 0.97661 0.97537 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.52 71.98 0.69 -1.48 16 2 C 0.06 0.89 3.92 31.10 0.12 1.01 16 3 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.15 -1.68 6.63 31.61 0.21 -1.47 16 5 C -0.15 -1.81 6.63 31.61 0.21 -1.60 16 6 C 0.07 1.15 3.35 31.10 0.10 1.25 16 7 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 8 C 0.11 2.27 5.75 86.38 0.50 2.77 16 9 N -1.11 -28.77 5.85 -187.51 -1.10 -29.86 16 10 S 2.62 96.43 5.46 -56.49 -0.31 96.12 16 11 O -1.00 -43.71 18.08 -127.65 -2.31 -46.02 16 12 O -1.00 -44.08 17.50 -127.65 -2.23 -46.32 16 13 C -0.58 -21.66 6.01 71.98 0.43 -21.22 16 14 C 0.02 0.94 4.98 29.85 0.15 1.09 16 15 C -0.54 -29.67 9.11 25.60 0.23 -29.44 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 17 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 18 N -0.94 -57.31 13.29 21.45 0.28 -57.02 16 19 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 23 O -0.40 -9.12 11.01 -148.98 -1.64 -10.76 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 28 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.08 1.02 7.87 -2.39 -0.02 1.00 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.75 7.69 -2.39 -0.02 1.74 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.42 9.63 8.62 -96.75 -0.83 8.79 16 34 H 0.15 4.55 8.14 -2.39 -0.02 4.53 16 35 H 0.15 4.66 8.14 -2.39 -0.02 4.64 16 36 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -79.59 329.20 -1.97 -81.55 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.20 Total: 16.17 kcal Atomic # 6 Polarization: -52.07 SS G_CDS: 3.10 Total: -48.97 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -0.81 Total: -86.88 kcal Atomic # 8 Polarization: -96.91 SS G_CDS: -6.18 Total: -103.09 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 96.43 SS G_CDS: -0.31 Total: 96.12 kcal Total: -79.59 -1.97 -81.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.632 kcal (2) G-P(sol) polarization free energy of solvation -79.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds