Wall clock time and date at job start Mon Mar 30 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.99156 * 2 1 4 4 C 1.54100 * 109.87952 * 121.08814 * 2 1 3 5 5 C 1.54801 * 104.18944 * 121.45290 * 4 2 1 6 6 C 1.54999 * 102.09318 * 20.87752 * 5 4 2 7 7 H 1.09005 * 110.75186 * 81.54068 * 6 5 4 8 8 C 1.53002 * 110.62127 * 204.47339 * 6 5 4 9 9 N 1.46496 * 109.47404 * 180.52269 * 8 6 5 10 10 S 1.65599 * 120.00146 * 165.00278 * 9 8 6 11 11 O 1.42105 * 104.27655 * 308.92954 * 10 9 8 12 12 O 1.42101 * 104.27764 * 181.07391 * 10 9 8 13 13 C 1.81395 * 104.44748 * 65.00260 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47535 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47286 * 119.99607 * 19 17 15 22 22 H 1.48501 * 109.47023 * 239.99779 * 19 17 15 23 23 O 1.43739 * 109.87715 * 238.91777 * 2 1 3 24 24 H 1.08998 * 109.47326 * 179.63090 * 1 2 3 25 25 H 1.09011 * 109.46988 * 299.62943 * 1 2 3 26 26 H 1.08996 * 109.47522 * 59.62437 * 1 2 3 27 27 H 1.09009 * 110.48659 * 240.12710 * 4 2 1 28 28 H 1.08999 * 110.49034 * 2.63894 * 4 2 1 29 29 H 1.09006 * 110.90975 * 262.68224 * 5 4 2 30 30 H 1.09001 * 110.91308 * 139.07238 * 5 4 2 31 31 H 1.09006 * 109.46465 * 60.52382 * 8 6 5 32 32 H 1.08999 * 109.46965 * 300.53059 * 8 6 5 33 33 H 0.97001 * 119.99851 * 345.00804 * 9 8 6 34 34 H 1.09003 * 109.47393 * 299.99669 * 13 10 9 35 35 H 1.08994 * 109.47678 * 60.00285 * 13 10 9 36 36 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 37 37 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 38 38 H 0.96996 * 119.99792 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0540 -0.7483 1.2410 5 6 2.9195 -1.8914 0.6575 6 6 3.2378 -1.3641 -0.7648 7 1 4.0690 -0.6594 -0.7384 8 6 3.5474 -2.5244 -1.7129 9 7 3.8564 -1.9978 -3.0446 10 16 4.5840 -2.9696 -4.1709 11 8 5.7091 -3.5109 -3.4923 12 8 4.7472 -2.1296 -5.3054 13 6 3.3604 -4.2653 -4.5089 14 6 3.9219 -5.2386 -5.5474 15 6 2.9052 -6.3148 -5.8287 16 1 1.9538 -6.3058 -5.3176 17 6 3.1899 -7.3115 -6.7378 18 7 4.3486 -7.3229 -7.3598 19 14 1.9299 -8.6459 -7.0859 20 1 0.7172 -8.4085 -6.2625 21 1 1.5647 -8.6185 -8.5250 22 1 2.5064 -9.9717 -6.7466 23 8 2.0187 -0.6979 -1.1577 24 1 -0.3634 -1.0276 -0.0066 25 1 -0.3633 0.5081 0.8934 26 1 -0.3634 0.5196 -0.8865 27 1 2.6620 -0.0860 1.8574 28 1 1.2246 -1.1529 1.8210 29 1 2.3539 -2.8221 0.6097 30 1 3.8332 -2.0225 1.2372 31 1 2.6817 -3.1839 -1.7748 32 1 4.4037 -3.0834 -1.3355 33 1 3.6348 -1.0800 -3.2666 34 1 3.1389 -4.8050 -3.5882 35 1 2.4469 -3.8113 -4.8927 36 1 4.1437 -4.6992 -6.4683 37 1 4.8354 -5.6927 -5.1632 38 1 4.5487 -8.0239 -7.9996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416528064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:51 Heat of formation + Delta-G solvation = -139.764880 kcal Electronic energy + Delta-G solvation = -19811.946145 eV Core-core repulsion = 16587.878001 eV Total energy + Delta-G solvation = -3224.068145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90623 -36.55812 -35.46723 -35.20258 -33.86256 -32.56315 -31.62544 -31.13000 -27.57711 -25.57088 -23.87779 -21.81250 -21.50484 -21.23878 -18.81494 -17.39460 -17.04929 -16.64589 -16.09305 -16.02577 -15.38858 -15.00872 -14.56149 -14.50383 -13.78186 -13.50078 -13.39270 -13.07712 -12.59706 -12.49491 -12.44250 -12.18729 -11.84958 -11.71470 -11.55369 -11.46581 -11.15143 -11.07553 -10.98174 -10.94538 -10.92671 -10.38068 -10.35696 -9.91473 -9.76867 -9.44714 -8.97773 -8.48628 -6.10549 -4.15805 0.84693 3.14505 3.26731 3.33927 3.37555 3.52390 4.20048 4.29740 4.37453 4.40954 4.58803 4.65198 4.82090 4.89888 4.95859 5.07965 5.20507 5.24764 5.27484 5.41932 5.48191 5.51971 5.63793 5.71473 5.73481 5.74995 5.81419 5.90119 6.02021 6.53046 6.71396 7.17614 7.33246 7.39511 7.82959 8.20160 8.87934 9.48888 11.00580 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.003985 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.434890 B = 7023.879431 C = 7723.798455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.150 4.150 6 C 0.071 3.929 7 H 0.079 0.921 8 C 0.123 3.877 9 N -1.125 6.125 10 S 2.594 3.406 11 O -0.969 6.969 12 O -0.967 6.967 13 C -0.589 4.589 14 C 0.027 3.973 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 O -0.366 6.366 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.416 0.584 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 13.513 17.982 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.190 4.190 5 C -0.188 4.188 6 C 0.012 3.988 7 H 0.097 0.903 8 C -0.003 4.003 9 N -0.882 5.882 10 S 2.692 3.308 11 O -0.959 6.959 12 O -0.958 6.958 13 C -0.723 4.723 14 C -0.012 4.012 15 C -0.558 4.558 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 O -0.285 6.285 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.646 13.388 17.359 22.409 hybrid contribution -1.312 -0.589 0.032 1.439 sum -5.958 12.800 17.391 22.401 Atomic orbital electron populations 1.21930 0.93716 1.02933 1.02274 1.22722 0.95221 0.95704 0.85067 0.91553 1.23012 1.00253 0.97644 0.98061 1.23142 1.00855 0.99342 0.95511 1.23345 0.88462 0.93926 0.93082 0.90305 1.21339 1.01505 0.95275 0.82221 1.55694 1.81352 1.26353 1.24823 1.05490 0.76499 0.75799 0.73042 1.93532 1.48157 1.80449 1.73765 1.93552 1.86059 1.65535 1.50626 1.30437 1.15928 1.15492 1.10423 1.18975 0.97454 0.93068 0.91720 1.21053 1.01465 1.09121 1.24201 0.91996 1.25072 0.95633 0.98111 0.95722 1.69968 1.21872 1.33903 1.27146 0.86413 0.81254 0.81431 0.78181 1.19659 1.20807 1.20822 1.88941 1.39306 1.67405 1.32892 0.91773 0.91472 0.91856 0.90711 0.90205 0.89810 0.89711 0.90890 0.88885 0.75049 0.86390 0.86030 0.94809 0.94804 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.36 37.16 0.35 -0.76 16 2 C 0.07 0.59 4.06 -26.16 -0.11 0.48 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.15 -1.01 6.64 -25.21 -0.17 -1.17 16 5 C -0.15 -1.12 6.59 -24.73 -0.16 -1.29 16 6 C 0.07 0.69 3.42 -25.67 -0.09 0.60 16 7 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.12 1.42 5.88 -4.04 -0.02 1.40 16 9 N -1.12 -15.38 5.87 -10.61 -0.06 -15.44 16 10 S 2.59 47.10 5.46 -107.50 -0.59 46.51 16 11 O -0.97 -20.09 17.50 -57.54 -1.01 -21.09 16 12 O -0.97 -20.58 18.08 -57.54 -1.04 -21.62 16 13 C -0.59 -11.44 6.01 37.16 0.22 -11.22 16 14 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 15 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 16 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 O -0.37 -4.06 10.81 -35.23 -0.38 -4.44 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.08 0.46 7.70 -51.93 -0.40 0.06 16 29 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 1.03 7.69 -51.93 -0.40 0.63 16 33 H 0.42 5.21 8.56 -34.47 -0.30 4.92 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 35 H 0.12 2.17 8.14 -51.93 -0.42 1.75 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -35.28 329.12 -9.06 -44.34 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.13 Total: 1.08 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -0.53 Total: -24.67 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.67 Total: -41.37 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -2.43 Total: -47.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 47.10 SS G_CDS: -0.59 Total: 46.51 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.28 -9.06 -44.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.426 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds