Wall clock time and date at job start Mon Mar 30 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.99156 * 2 1 4 4 C 1.54100 * 109.87952 * 121.08814 * 2 1 3 5 5 C 1.54801 * 104.18944 * 121.45290 * 4 2 1 6 6 C 1.54999 * 102.09318 * 20.87752 * 5 4 2 7 7 H 1.09005 * 110.75186 * 81.54068 * 6 5 4 8 8 C 1.53002 * 110.62127 * 204.47339 * 6 5 4 9 9 N 1.46496 * 109.47404 * 180.52269 * 8 6 5 10 10 S 1.65599 * 120.00146 * 165.00278 * 9 8 6 11 11 O 1.42105 * 104.27655 * 308.92954 * 10 9 8 12 12 O 1.42101 * 104.27764 * 181.07391 * 10 9 8 13 13 C 1.81395 * 104.44748 * 65.00260 * 10 9 8 14 14 C 1.52999 * 109.46986 * 180.02562 * 13 10 9 15 15 C 1.50700 * 109.47535 * 180.02562 * 14 13 10 16 16 H 1.08006 * 119.99840 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00463 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00103 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47286 * 119.99607 * 19 17 15 22 22 H 1.48501 * 109.47023 * 239.99779 * 19 17 15 23 23 O 1.43739 * 109.87715 * 238.91777 * 2 1 3 24 24 H 1.08998 * 109.47326 * 179.63090 * 1 2 3 25 25 H 1.09011 * 109.46988 * 299.62943 * 1 2 3 26 26 H 1.08996 * 109.47522 * 59.62437 * 1 2 3 27 27 H 1.09009 * 110.48659 * 240.12710 * 4 2 1 28 28 H 1.08999 * 110.49034 * 2.63894 * 4 2 1 29 29 H 1.09006 * 110.90975 * 262.68224 * 5 4 2 30 30 H 1.09001 * 110.91308 * 139.07238 * 5 4 2 31 31 H 1.09006 * 109.46465 * 60.52382 * 8 6 5 32 32 H 1.08999 * 109.46965 * 300.53059 * 8 6 5 33 33 H 0.97001 * 119.99851 * 345.00804 * 9 8 6 34 34 H 1.09003 * 109.47393 * 299.99669 * 13 10 9 35 35 H 1.08994 * 109.47678 * 60.00285 * 13 10 9 36 36 H 1.09004 * 109.47080 * 299.99725 * 14 13 10 37 37 H 1.09005 * 109.47285 * 59.99790 * 14 13 10 38 38 H 0.96996 * 119.99792 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0540 -0.7483 1.2410 5 6 2.9195 -1.8914 0.6575 6 6 3.2378 -1.3641 -0.7648 7 1 4.0690 -0.6594 -0.7384 8 6 3.5474 -2.5244 -1.7129 9 7 3.8564 -1.9978 -3.0446 10 16 4.5840 -2.9696 -4.1709 11 8 5.7091 -3.5109 -3.4923 12 8 4.7472 -2.1296 -5.3054 13 6 3.3604 -4.2653 -4.5089 14 6 3.9219 -5.2386 -5.5474 15 6 2.9052 -6.3148 -5.8287 16 1 1.9538 -6.3058 -5.3176 17 6 3.1899 -7.3115 -6.7378 18 7 4.3486 -7.3229 -7.3598 19 14 1.9299 -8.6459 -7.0859 20 1 0.7172 -8.4085 -6.2625 21 1 1.5647 -8.6185 -8.5250 22 1 2.5064 -9.9717 -6.7466 23 8 2.0187 -0.6979 -1.1577 24 1 -0.3634 -1.0276 -0.0066 25 1 -0.3633 0.5081 0.8934 26 1 -0.3634 0.5196 -0.8865 27 1 2.6620 -0.0860 1.8574 28 1 1.2246 -1.1529 1.8210 29 1 2.3539 -2.8221 0.6097 30 1 3.8332 -2.0225 1.2372 31 1 2.6817 -3.1839 -1.7748 32 1 4.4037 -3.0834 -1.3355 33 1 3.6348 -1.0800 -3.2666 34 1 3.1389 -4.8050 -3.5882 35 1 2.4469 -3.8113 -4.8927 36 1 4.1437 -4.6992 -6.4683 37 1 4.8354 -5.6927 -5.1632 38 1 4.5487 -8.0239 -7.9996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416528064.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:51 Heat of formation + Delta-G solvation = -166.913416 kcal Electronic energy + Delta-G solvation = -19813.123394 eV Core-core repulsion = 16587.878001 eV Total energy + Delta-G solvation = -3225.245394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58591 -38.16003 -37.02602 -36.28384 -35.88701 -33.20034 -33.11615 -32.34971 -28.35953 -27.58508 -24.58464 -23.60228 -22.38887 -21.86656 -20.23926 -19.06626 -18.27623 -17.81172 -17.37820 -17.01649 -16.68170 -16.51991 -16.20010 -15.54452 -15.04201 -14.53138 -14.40940 -14.25480 -13.86158 -13.68685 -13.51473 -13.20387 -13.14636 -13.05983 -13.01191 -12.94401 -12.77344 -12.50234 -12.24793 -12.10878 -11.88037 -11.76948 -11.67084 -11.49118 -11.17373 -10.64916 -10.60852 -10.35774 -8.25603 -6.39478 -0.66444 1.41390 1.42069 1.55453 1.84572 2.38580 2.81255 2.81754 3.07906 3.26788 3.60302 3.77646 3.98413 4.03494 4.06217 4.14424 4.16465 4.31188 4.48548 4.56955 4.60205 4.72541 4.77514 4.84582 4.98648 4.99344 5.12668 5.18611 5.24093 5.28346 5.29592 5.34803 5.69248 6.03842 6.07150 6.11681 6.74357 7.30696 8.86943 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.003985 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.434890 B = 7023.879431 C = 7723.798455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 H 0.071 0.929 4 C -0.146 4.146 5 C -0.148 4.148 6 C 0.069 3.931 7 H 0.083 0.917 8 C 0.110 3.890 9 N -1.108 6.108 10 S 2.624 3.376 11 O -0.995 6.995 12 O -1.001 7.001 13 C -0.588 4.588 14 C 0.019 3.981 15 C -0.538 4.538 16 H 0.075 0.925 17 C -0.004 4.004 18 N -0.934 5.934 19 Si 0.975 3.025 20 H -0.256 1.256 21 H -0.279 1.279 22 H -0.277 1.277 23 O -0.391 6.391 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.424 0.576 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.006 0.994 37 H 0.010 0.990 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.282 13.641 19.978 25.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.003 3.997 3 H 0.089 0.911 4 C -0.184 4.184 5 C -0.187 4.187 6 C 0.010 3.990 7 H 0.101 0.899 8 C -0.016 4.016 9 N -0.869 5.869 10 S 2.720 3.280 11 O -0.984 6.984 12 O -0.991 6.991 13 C -0.720 4.720 14 C -0.020 4.020 15 C -0.577 4.577 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.799 3.201 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.203 1.203 23 O -0.311 6.311 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.024 0.976 37 H 0.028 0.972 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.351 13.524 19.363 24.457 hybrid contribution -0.784 -0.549 -0.531 1.094 sum -7.135 12.976 18.832 23.957 Atomic orbital electron populations 1.21941 0.93269 1.02660 1.02818 1.22939 0.95685 0.95978 0.85075 0.91108 1.23009 1.00602 0.97344 0.97434 1.23171 1.01778 0.99613 0.94089 1.23379 0.88421 0.93403 0.93772 0.89914 1.21683 1.02276 0.96512 0.81109 1.55239 1.80900 1.25918 1.24839 1.04340 0.75839 0.75152 0.72619 1.93496 1.49551 1.81144 1.74252 1.93499 1.86559 1.66254 1.52820 1.30336 1.16824 1.15171 1.09704 1.18843 0.96757 0.94016 0.92397 1.21551 1.02262 1.09662 1.24263 0.90690 1.26120 0.97766 1.00894 0.95487 1.70110 1.24169 1.35095 1.28022 0.85249 0.78785 0.77950 0.78158 1.17995 1.20434 1.20251 1.88912 1.39762 1.67877 1.34570 0.92376 0.89448 0.92860 0.89284 0.89184 0.89692 0.88200 0.89784 0.88333 0.74026 0.83868 0.84276 0.97592 0.97198 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.36 71.98 0.67 -1.26 16 2 C 0.06 0.88 4.06 30.97 0.13 1.01 16 3 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.15 -1.52 6.64 31.58 0.21 -1.31 16 5 C -0.15 -1.82 6.59 31.89 0.21 -1.61 16 6 C 0.07 1.21 3.42 31.28 0.11 1.32 16 7 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 8 C 0.11 2.32 5.88 86.38 0.51 2.83 16 9 N -1.11 -28.87 5.87 -187.49 -1.10 -29.98 16 10 S 2.62 94.86 5.46 -56.49 -0.31 94.55 16 11 O -0.99 -41.25 17.50 -127.65 -2.23 -43.48 16 12 O -1.00 -43.08 18.08 -127.65 -2.31 -45.39 16 13 C -0.59 -22.53 6.01 71.98 0.43 -22.10 16 14 C 0.02 0.99 4.98 29.85 0.15 1.14 16 15 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 16 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 17 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 18 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 19 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 23 O -0.39 -8.01 10.81 -148.98 -1.61 -9.62 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.09 0.77 7.70 -2.39 -0.02 0.75 16 29 H 0.08 1.03 8.06 -2.38 -0.02 1.01 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.10 1.99 7.69 -2.39 -0.02 1.97 16 33 H 0.42 10.09 8.56 -96.74 -0.83 9.26 16 34 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -76.45 329.12 -1.93 -78.38 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.21 Total: 16.51 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 3.11 Total: -49.64 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -0.82 Total: -86.87 kcal Atomic # 8 Polarization: -92.34 SS G_CDS: -6.15 Total: -98.49 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 94.86 SS G_CDS: -0.31 Total: 94.55 kcal Total: -76.45 -1.93 -78.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528064.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.537 kcal (2) G-P(sol) polarization free energy of solvation -76.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds