Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.90016 * 2 1 4 4 C 1.54377 * 109.83433 * 120.93948 * 2 1 3 5 5 C 1.55300 * 102.25502 * 140.86609 * 4 2 1 6 6 C 1.54940 * 100.94415 * 325.86750 * 5 4 2 7 7 H 1.08997 * 110.31031 * 277.52940 * 6 5 4 8 8 C 1.53001 * 110.31180 * 155.36050 * 6 5 4 9 9 N 1.46497 * 109.47233 * 182.83697 * 8 6 5 10 10 S 1.65600 * 119.99907 * 165.00044 * 9 8 6 11 11 O 1.42103 * 104.27538 * 181.07061 * 10 9 8 12 12 O 1.42106 * 104.27644 * 308.92448 * 10 9 8 13 13 C 1.81394 * 104.45124 * 64.99564 * 10 9 8 14 14 C 1.53002 * 109.47139 * 179.97438 * 13 10 9 15 15 C 1.50701 * 109.47132 * 180.02562 * 14 13 10 16 16 H 1.07998 * 119.99811 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99900 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00385 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47045 * 89.99853 * 19 17 15 21 21 H 1.48499 * 109.47014 * 209.99759 * 19 17 15 22 22 H 1.48500 * 109.46967 * 329.99323 * 19 17 15 23 23 O 1.43245 * 109.82960 * 239.07072 * 2 1 3 24 24 H 1.09003 * 109.47740 * 179.47743 * 1 2 3 25 25 H 1.09004 * 109.47149 * 299.47446 * 1 2 3 26 26 H 1.09002 * 109.47438 * 59.47324 * 1 2 3 27 27 H 1.09006 * 110.84785 * 259.06340 * 4 2 1 28 28 H 1.09004 * 110.84470 * 22.47061 * 4 2 1 29 29 H 1.09007 * 111.12449 * 83.79023 * 5 4 2 30 30 H 1.09003 * 111.12579 * 207.90506 * 5 4 2 31 31 H 1.09005 * 109.46631 * 302.83254 * 8 6 5 32 32 H 1.09000 * 109.47077 * 62.83028 * 8 6 5 33 33 H 0.97000 * 119.99862 * 344.99236 * 9 8 6 34 34 H 1.08997 * 109.47283 * 299.99716 * 13 10 9 35 35 H 1.08999 * 109.47190 * 60.00423 * 13 10 9 36 36 H 1.09003 * 109.47278 * 299.99840 * 14 13 10 37 37 H 1.08996 * 109.47110 * 60.00182 * 14 13 10 38 38 H 0.96996 * 120.00571 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0537 -0.7466 1.2456 5 6 3.2729 -1.5222 0.6765 6 6 2.7746 -1.8444 -0.7548 7 1 2.1399 -2.7305 -0.7439 8 6 3.9624 -2.0522 -1.6965 9 7 3.4718 -2.2883 -3.0565 10 16 4.5099 -2.1775 -4.3421 11 8 3.6933 -2.4385 -5.4753 12 8 5.1456 -0.9180 -4.1716 13 6 5.6937 -3.5278 -4.0858 14 6 6.7173 -3.5314 -5.2229 15 6 7.7004 -4.6536 -5.0103 16 1 7.6049 -5.2994 -4.1500 17 6 8.7223 -4.8552 -5.9137 18 7 8.8389 -4.0686 -6.9611 19 14 9.9413 -6.2459 -5.6497 20 1 9.4424 -7.4749 -6.3175 21 1 11.2562 -5.8678 -6.2272 22 1 10.0945 -6.5003 -4.1947 23 8 2.0158 -0.6926 -1.1559 24 1 -0.3635 -1.0276 -0.0094 25 1 -0.3634 0.5057 0.8947 26 1 -0.3634 0.5220 -0.8852 27 1 2.3672 -0.0426 2.0165 28 1 1.2998 -1.4324 1.6323 29 1 4.1620 -0.8921 0.6504 30 1 3.4576 -2.4346 1.2436 31 1 4.5933 -1.1633 -1.6870 32 1 4.5427 -2.9132 -1.3649 33 1 2.5390 -2.5097 -3.2040 34 1 6.2070 -3.3854 -3.1349 35 1 5.1622 -4.4793 -4.0729 36 1 6.2036 -3.6741 -6.1737 37 1 7.2488 -2.5799 -5.2363 38 1 9.5576 -4.2106 -7.5968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416528065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = -139.350141 kcal Electronic energy + Delta-G solvation = -19810.485633 eV Core-core repulsion = 16586.435473 eV Total energy + Delta-G solvation = -3224.050160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.91526 -36.51424 -35.42318 -35.17443 -33.86846 -32.52605 -31.61605 -31.13661 -27.59808 -25.57753 -23.89176 -21.95319 -21.54963 -20.93151 -18.82140 -17.43156 -17.29591 -16.64934 -16.05553 -15.78648 -15.35614 -14.72568 -14.53945 -14.47774 -13.94899 -13.68140 -13.35039 -13.15342 -12.56315 -12.42493 -12.33013 -12.15558 -11.90984 -11.72294 -11.50565 -11.41997 -11.16285 -11.09677 -11.07200 -10.93761 -10.91863 -10.39292 -10.35975 -9.77027 -9.71896 -9.44328 -8.97003 -8.49049 -6.11008 -4.16631 0.86470 3.17164 3.26716 3.32818 3.35414 3.53923 4.15967 4.29321 4.38704 4.45839 4.48182 4.77670 4.83994 4.91548 4.99291 5.05692 5.24075 5.24463 5.28058 5.39031 5.44138 5.51232 5.62912 5.64278 5.71341 5.78115 5.86559 5.94761 6.03533 6.51619 6.87217 7.20351 7.32852 7.39403 7.81833 8.19295 8.86819 9.47975 11.00057 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033463 B = 0.003670 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.552923 B = 7628.066489 C = 8170.841268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.077 0.923 8 C 0.117 3.883 9 N -1.122 6.122 10 S 2.595 3.405 11 O -0.968 6.968 12 O -0.966 6.966 13 C -0.591 4.591 14 C 0.027 3.973 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 O -0.366 6.366 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.414 0.586 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.128 4.519 17.948 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.098 0.902 4 C -0.188 4.188 5 C -0.191 4.191 6 C 0.016 3.984 7 H 0.095 0.905 8 C -0.009 4.009 9 N -0.879 5.879 10 S 2.692 3.308 11 O -0.958 6.958 12 O -0.956 6.956 13 C -0.724 4.724 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 O -0.285 6.285 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.247 0.753 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.946 5.352 16.925 22.574 hybrid contribution 0.505 -1.453 0.675 1.680 sum -13.440 3.899 17.600 22.486 Atomic orbital electron populations 1.22141 0.95009 1.02515 1.02286 1.22746 0.94279 0.96573 0.84947 0.90242 1.23184 0.97777 0.99772 0.98100 1.23299 0.98928 1.01590 0.95241 1.23166 0.92356 0.89892 0.92948 0.90481 1.21461 0.95802 1.01980 0.81707 1.55626 1.23724 1.88732 1.19830 1.05483 0.75258 0.77203 0.72846 1.93549 1.66761 1.86935 1.48584 1.93537 1.77338 1.39447 1.85310 1.30464 1.14675 1.16681 1.10626 1.18964 0.92270 0.99610 0.90334 1.21010 1.11395 1.14154 1.09431 0.92064 1.25073 0.97816 0.96581 0.95051 1.69953 1.32521 1.37927 1.12433 0.86468 0.80389 0.81986 0.78413 1.20486 1.21022 1.19781 1.88544 1.70324 1.40020 1.29644 0.92255 0.91687 0.91835 0.89988 0.90402 0.89629 0.89461 0.89615 0.90472 0.75269 0.86420 0.86132 0.94813 0.94794 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.44 37.15 0.35 -0.87 16 2 C 0.07 0.64 4.16 -26.01 -0.11 0.53 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -0.99 6.55 -24.79 -0.16 -1.15 16 5 C -0.15 -1.10 6.57 -24.49 -0.16 -1.26 16 6 C 0.08 0.73 3.53 -25.71 -0.09 0.64 16 7 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 8 C 0.12 1.35 5.86 -4.04 -0.02 1.32 16 9 N -1.12 -15.43 5.80 -10.61 -0.06 -15.49 16 10 S 2.59 47.83 5.46 -107.50 -0.59 47.25 16 11 O -0.97 -20.83 18.08 -57.54 -1.04 -21.87 16 12 O -0.97 -20.82 17.50 -57.54 -1.01 -21.83 16 13 C -0.59 -11.31 6.01 37.16 0.22 -11.08 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 19 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 O -0.37 -4.37 10.61 -35.23 -0.37 -4.74 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 29 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.07 7.69 -51.93 -0.40 0.67 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.41 5.10 8.62 -34.47 -0.30 4.80 16 34 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 35 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 329.22 15.07 4.96 4.96 Total: -1.00 -35.97 329.22 -9.05 -45.02 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.14 Total: 0.95 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: -0.52 Total: -24.53 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.67 Total: -41.40 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -2.42 Total: -48.44 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 47.83 SS G_CDS: -0.59 Total: 47.25 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.97 -9.05 -45.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.331 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds