Wall clock time and date at job start Mon Mar 30 2020 02:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.90016 * 2 1 4 4 C 1.54377 * 109.83433 * 120.93948 * 2 1 3 5 5 C 1.55300 * 102.25502 * 140.86609 * 4 2 1 6 6 C 1.54940 * 100.94415 * 325.86750 * 5 4 2 7 7 H 1.08997 * 110.31031 * 277.52940 * 6 5 4 8 8 C 1.53001 * 110.31180 * 155.36050 * 6 5 4 9 9 N 1.46497 * 109.47233 * 182.83697 * 8 6 5 10 10 S 1.65600 * 119.99907 * 165.00044 * 9 8 6 11 11 O 1.42103 * 104.27538 * 181.07061 * 10 9 8 12 12 O 1.42106 * 104.27644 * 308.92448 * 10 9 8 13 13 C 1.81394 * 104.45124 * 64.99564 * 10 9 8 14 14 C 1.53002 * 109.47139 * 179.97438 * 13 10 9 15 15 C 1.50701 * 109.47132 * 180.02562 * 14 13 10 16 16 H 1.07998 * 119.99811 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99900 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00385 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99823 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47045 * 89.99853 * 19 17 15 21 21 H 1.48499 * 109.47014 * 209.99759 * 19 17 15 22 22 H 1.48500 * 109.46967 * 329.99323 * 19 17 15 23 23 O 1.43245 * 109.82960 * 239.07072 * 2 1 3 24 24 H 1.09003 * 109.47740 * 179.47743 * 1 2 3 25 25 H 1.09004 * 109.47149 * 299.47446 * 1 2 3 26 26 H 1.09002 * 109.47438 * 59.47324 * 1 2 3 27 27 H 1.09006 * 110.84785 * 259.06340 * 4 2 1 28 28 H 1.09004 * 110.84470 * 22.47061 * 4 2 1 29 29 H 1.09007 * 111.12449 * 83.79023 * 5 4 2 30 30 H 1.09003 * 111.12579 * 207.90506 * 5 4 2 31 31 H 1.09005 * 109.46631 * 302.83254 * 8 6 5 32 32 H 1.09000 * 109.47077 * 62.83028 * 8 6 5 33 33 H 0.97000 * 119.99862 * 344.99236 * 9 8 6 34 34 H 1.08997 * 109.47283 * 299.99716 * 13 10 9 35 35 H 1.08999 * 109.47190 * 60.00423 * 13 10 9 36 36 H 1.09003 * 109.47278 * 299.99840 * 14 13 10 37 37 H 1.08996 * 109.47110 * 60.00182 * 14 13 10 38 38 H 0.96996 * 120.00571 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0537 -0.7466 1.2456 5 6 3.2729 -1.5222 0.6765 6 6 2.7746 -1.8444 -0.7548 7 1 2.1399 -2.7305 -0.7439 8 6 3.9624 -2.0522 -1.6965 9 7 3.4718 -2.2883 -3.0565 10 16 4.5099 -2.1775 -4.3421 11 8 3.6933 -2.4385 -5.4753 12 8 5.1456 -0.9180 -4.1716 13 6 5.6937 -3.5278 -4.0858 14 6 6.7173 -3.5314 -5.2229 15 6 7.7004 -4.6536 -5.0103 16 1 7.6049 -5.2994 -4.1500 17 6 8.7223 -4.8552 -5.9137 18 7 8.8389 -4.0686 -6.9611 19 14 9.9413 -6.2459 -5.6497 20 1 9.4424 -7.4749 -6.3175 21 1 11.2562 -5.8678 -6.2272 22 1 10.0945 -6.5003 -4.1947 23 8 2.0158 -0.6926 -1.1559 24 1 -0.3635 -1.0276 -0.0094 25 1 -0.3634 0.5057 0.8947 26 1 -0.3634 0.5220 -0.8852 27 1 2.3672 -0.0426 2.0165 28 1 1.2998 -1.4324 1.6323 29 1 4.1620 -0.8921 0.6504 30 1 3.4576 -2.4346 1.2436 31 1 4.5933 -1.1633 -1.6870 32 1 4.5427 -2.9132 -1.3649 33 1 2.5390 -2.5097 -3.2040 34 1 6.2070 -3.3854 -3.1349 35 1 5.1622 -4.4793 -4.0729 36 1 6.2036 -3.6741 -6.1737 37 1 7.2488 -2.5799 -5.2363 38 1 9.5576 -4.2106 -7.5968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416528065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:53 Heat of formation + Delta-G solvation = -167.412531 kcal Electronic energy + Delta-G solvation = -19811.702510 eV Core-core repulsion = 16586.435473 eV Total energy + Delta-G solvation = -3225.267037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60777 -38.14010 -36.99970 -36.25959 -35.88044 -33.18573 -33.10771 -32.34821 -28.37565 -27.57847 -24.63113 -23.60177 -22.48011 -21.62115 -20.24972 -19.07577 -18.30413 -17.98657 -17.41096 -16.98807 -16.66360 -16.48322 -15.99751 -15.21505 -15.13741 -14.65566 -14.43281 -14.30804 -13.95609 -13.71363 -13.43995 -13.22399 -13.16401 -13.04497 -12.91684 -12.80448 -12.75881 -12.57626 -12.22780 -12.11732 -11.85156 -11.72331 -11.68144 -11.65618 -11.16896 -10.63718 -10.46051 -10.30689 -8.24747 -6.39033 -0.65432 1.42093 1.44183 1.55233 1.88152 2.39286 2.80675 2.87182 3.08770 3.29638 3.57712 3.78282 3.92064 4.00363 4.15855 4.18360 4.21922 4.33661 4.46473 4.54564 4.60885 4.77673 4.79785 4.85724 4.95943 4.97587 5.09364 5.16541 5.27963 5.28844 5.29963 5.38386 5.69670 6.06856 6.10991 6.23942 6.75137 7.31263 8.87682 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.033463 B = 0.003670 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.552923 B = 7628.066489 C = 8170.841268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.060 3.940 3 H 0.073 0.927 4 C -0.143 4.143 5 C -0.149 4.149 6 C 0.071 3.929 7 H 0.093 0.907 8 C 0.103 3.897 9 N -1.105 6.105 10 S 2.618 3.382 11 O -1.003 7.003 12 O -1.002 7.002 13 C -0.584 4.584 14 C 0.018 3.982 15 C -0.538 4.538 16 H 0.079 0.921 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.976 3.024 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.255 1.255 23 O -0.400 6.400 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.423 0.577 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.005 0.995 37 H 0.006 0.994 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 2.870 20.838 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.003 3.997 3 H 0.091 0.909 4 C -0.180 4.180 5 C -0.187 4.187 6 C 0.013 3.987 7 H 0.111 0.889 8 C -0.023 4.023 9 N -0.866 5.866 10 S 2.716 3.284 11 O -0.994 6.994 12 O -0.991 6.991 13 C -0.716 4.716 14 C -0.021 4.021 15 C -0.577 4.577 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.576 5.576 19 Si 0.799 3.201 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.179 1.179 23 O -0.321 6.321 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.127 0.873 33 H 0.259 0.741 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.246 3.701 19.829 24.695 hybrid contribution 0.528 -0.875 -0.189 1.039 sum -13.718 2.826 19.640 24.123 Atomic orbital electron populations 1.22118 0.94238 1.02653 1.02572 1.22952 0.94997 0.96440 0.85347 0.90907 1.23174 0.97682 0.99944 0.97211 1.23328 0.98941 1.02678 0.93757 1.23316 0.91792 0.89952 0.93689 0.88937 1.21861 0.97053 1.02845 0.80495 1.55140 1.23295 1.88385 1.19821 1.04474 0.74893 0.76246 0.72833 1.93492 1.67556 1.87162 1.51152 1.93491 1.78362 1.41300 1.85977 1.30310 1.13689 1.18403 1.09231 1.18841 0.93489 0.98016 0.91742 1.21539 1.11676 1.14623 1.09879 0.90308 1.26153 1.00175 0.99440 0.94656 1.70109 1.33578 1.40187 1.13683 0.85284 0.77285 0.78264 0.79233 1.19686 1.20994 1.17889 1.88510 1.70851 1.40997 1.31698 0.92097 0.89730 0.93279 0.88562 0.89081 0.89983 0.87141 0.91056 0.87271 0.74092 0.83574 0.83611 0.97688 0.97528 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.44 71.98 0.68 -1.49 16 2 C 0.06 0.98 4.16 31.06 0.13 1.11 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.14 -1.47 6.55 31.85 0.21 -1.26 16 5 C -0.15 -1.71 6.57 32.05 0.21 -1.50 16 6 C 0.07 1.22 3.53 31.26 0.11 1.33 16 7 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 8 C 0.10 2.16 5.86 86.38 0.51 2.66 16 9 N -1.11 -28.96 5.80 -187.49 -1.09 -30.05 16 10 S 2.62 96.69 5.46 -56.49 -0.31 96.38 16 11 O -1.00 -43.94 18.08 -127.65 -2.31 -46.25 16 12 O -1.00 -44.03 17.50 -127.65 -2.23 -46.26 16 13 C -0.58 -21.71 6.01 71.98 0.43 -21.28 16 14 C 0.02 0.95 4.98 29.85 0.15 1.10 16 15 C -0.54 -29.69 9.11 25.60 0.23 -29.45 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 17 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 18 N -0.94 -57.34 13.29 21.45 0.28 -57.05 16 19 Si 0.98 43.08 29.54 68.60 2.03 45.10 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 23 O -0.40 -9.16 10.61 -148.98 -1.58 -10.74 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 28 H 0.09 0.72 7.85 -2.39 -0.02 0.70 16 29 H 0.08 1.01 8.06 -2.38 -0.02 0.99 16 30 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.71 7.69 -2.38 -0.02 1.70 16 32 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.42 9.84 8.62 -96.74 -0.83 9.01 16 34 H 0.15 4.56 8.14 -2.39 -0.02 4.54 16 35 H 0.15 4.67 8.14 -2.39 -0.02 4.65 16 36 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -79.51 329.22 -1.88 -81.39 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.20 Total: 16.16 kcal Atomic # 6 Polarization: -51.80 SS G_CDS: 3.12 Total: -48.68 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -0.80 Total: -87.10 kcal Atomic # 8 Polarization: -97.13 SS G_CDS: -6.12 Total: -103.25 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 96.69 SS G_CDS: -0.31 Total: 96.38 kcal Total: -79.51 -1.88 -81.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.024 kcal (2) G-P(sol) polarization free energy of solvation -79.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds