Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.89329 * 2 1 4 4 C 1.54378 * 109.82837 * 239.07223 * 2 1 3 5 5 C 1.55309 * 102.25014 * 219.13100 * 4 2 1 6 6 C 1.54944 * 100.94264 * 34.13276 * 5 4 2 7 7 H 1.08994 * 110.31231 * 82.47388 * 6 5 4 8 8 C 1.53001 * 110.31101 * 204.64479 * 6 5 4 9 9 N 1.46497 * 109.47211 * 182.16666 * 8 6 5 10 10 S 1.65599 * 119.99799 * 164.99831 * 9 8 6 11 11 O 1.42102 * 104.27685 * 181.07042 * 10 9 8 12 12 O 1.42097 * 104.28015 * 308.92565 * 10 9 8 13 13 C 1.81397 * 104.45280 * 64.99964 * 10 9 8 14 14 C 1.52998 * 109.47535 * 179.97438 * 13 10 9 15 15 C 1.50699 * 109.47026 * 179.97438 * 14 13 10 16 16 H 1.07997 * 120.00406 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99510 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00566 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99787 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47044 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47136 * 119.99983 * 19 17 15 22 22 H 1.48504 * 109.46629 * 239.99949 * 19 17 15 23 23 O 1.43236 * 109.82846 * 120.93714 * 2 1 3 24 24 H 1.09002 * 109.47234 * 300.51656 * 1 2 3 25 25 H 1.09002 * 109.47126 * 60.51940 * 1 2 3 26 26 H 1.09002 * 109.47243 * 180.51822 * 1 2 3 27 27 H 1.08997 * 110.85123 * 100.93782 * 4 2 1 28 28 H 1.09007 * 110.84905 * 337.31125 * 4 2 1 29 29 H 1.09000 * 111.12311 * 276.21255 * 5 4 2 30 30 H 1.08999 * 111.16419 * 152.06915 * 5 4 2 31 31 H 1.09008 * 109.46663 * 302.16716 * 8 6 5 32 32 H 1.08999 * 109.47075 * 62.15925 * 8 6 5 33 33 H 0.97001 * 120.00427 * 344.99524 * 9 8 6 34 34 H 1.09005 * 109.46803 * 299.99965 * 13 10 9 35 35 H 1.08998 * 109.47060 * 59.99535 * 13 10 9 36 36 H 1.08997 * 109.46879 * 299.99975 * 14 13 10 37 37 H 1.08999 * 109.46708 * 60.00017 * 14 13 10 38 38 H 0.96994 * 120.00491 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7464 -1.2458 5 6 3.2730 -1.5221 -0.6768 6 6 2.7747 -1.8445 0.7544 7 1 2.1401 -2.7306 0.7435 8 6 3.9625 -2.0523 1.6961 9 7 3.4719 -2.4064 3.0303 10 16 4.5093 -3.0472 4.1508 11 8 3.6928 -3.2831 5.2897 12 8 5.1427 -4.1206 3.4685 13 6 5.6956 -1.7157 4.4830 14 6 6.7188 -2.1904 5.5168 15 6 7.7047 -1.0844 5.7922 16 1 7.6112 -0.1378 5.2808 17 6 8.7269 -1.2815 6.6964 18 7 8.8412 -2.4344 7.3188 19 14 9.9486 0.0896 7.0384 20 1 9.6028 1.2771 6.2165 21 1 9.8967 0.4512 8.4777 22 1 11.3177 -0.3698 6.6924 23 8 2.0159 -0.6927 1.1557 24 1 -0.3634 0.5218 0.8853 25 1 -0.3633 0.5058 -0.8946 26 1 -0.3634 -1.0276 0.0093 27 1 2.3671 -0.0424 -2.0166 28 1 1.3012 -1.4349 -1.6304 29 1 4.1620 -0.8920 -0.6507 30 1 3.4579 -2.4348 -1.2433 31 1 4.5919 -2.8566 1.3151 32 1 4.5446 -1.1326 1.7552 33 1 2.5395 -2.2654 3.2574 34 1 6.2090 -1.4478 3.5596 35 1 5.1659 -0.8452 4.8699 36 1 6.2051 -2.4580 6.4401 37 1 7.2486 -3.0610 5.1302 38 1 9.5600 -2.5729 7.9551 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416528067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -140.149727 kcal Electronic energy + Delta-G solvation = -19809.556704 eV Core-core repulsion = 16585.471871 eV Total energy + Delta-G solvation = -3224.084833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94371 -36.54986 -35.45720 -35.19076 -33.86073 -32.55690 -31.63064 -31.12822 -27.60206 -25.56876 -23.90331 -21.96478 -21.55389 -20.93425 -18.81807 -17.53345 -17.22444 -16.63924 -16.06272 -15.93717 -15.33567 -14.72471 -14.58679 -14.50648 -13.88537 -13.63045 -13.33872 -13.13866 -12.62685 -12.47020 -12.35242 -12.15023 -11.94783 -11.71228 -11.54554 -11.46023 -11.17570 -11.11177 -11.07485 -10.93758 -10.92607 -10.37836 -10.35464 -9.79639 -9.73871 -9.43707 -8.96915 -8.48612 -6.10452 -4.15722 0.85634 3.14833 3.26716 3.33885 3.37509 3.51070 4.14681 4.29177 4.39615 4.42769 4.44757 4.77157 4.84895 4.88211 4.97084 5.03828 5.24317 5.24800 5.27206 5.37939 5.45471 5.50817 5.61914 5.66893 5.72436 5.76837 5.85603 5.93301 6.02912 6.53364 6.83226 7.19689 7.33495 7.39835 7.83013 8.20297 8.88036 9.48913 11.00655 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.003883 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.262901 B = 7209.105911 C = 7787.148750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.074 3.926 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.079 0.921 8 C 0.118 3.882 9 N -1.124 6.124 10 S 2.594 3.406 11 O -0.968 6.968 12 O -0.969 6.969 13 C -0.589 4.589 14 C 0.027 3.973 15 C -0.519 4.519 16 H 0.062 0.938 17 C 0.057 3.943 18 N -0.891 5.891 19 Si 0.900 3.100 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 O -0.370 6.370 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.151 4.199 -18.048 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 H 0.098 0.902 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.016 3.984 7 H 0.097 0.903 8 C -0.008 4.008 9 N -0.882 5.882 10 S 2.692 3.308 11 O -0.958 6.958 12 O -0.959 6.959 13 C -0.723 4.723 14 C -0.012 4.012 15 C -0.558 4.558 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 O -0.290 6.290 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.978 3.228 -17.422 22.568 hybrid contribution 0.520 1.412 -0.039 1.505 sum -13.458 4.640 -17.461 22.529 Atomic orbital electron populations 1.22146 0.94996 1.02566 1.02292 1.22728 0.94283 0.96446 0.84899 0.90232 1.23191 0.97821 0.99760 0.98096 1.23293 0.98861 1.01626 0.95276 1.23176 0.92428 0.89813 0.92971 0.90297 1.21451 0.95695 1.01284 0.82416 1.55681 1.24043 1.83712 1.24718 1.05481 0.75292 0.76999 0.73053 1.93551 1.66726 1.85140 1.50381 1.93530 1.77410 1.51344 1.73651 1.30439 1.14607 1.16862 1.10381 1.18972 0.92288 0.98161 0.91790 1.21054 1.11174 0.99168 1.24450 0.91997 1.25075 0.97845 0.95916 0.95709 1.69962 1.32443 1.23188 1.27287 0.86415 0.80854 0.81846 0.78172 1.19657 1.20807 1.20825 1.88487 1.70464 1.40110 1.29926 0.91831 0.91674 0.92224 0.89951 0.90383 0.89663 0.89406 0.89033 0.91025 0.75036 0.86411 0.86044 0.94806 0.94818 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.44 37.16 0.35 -0.81 16 2 C 0.07 0.61 4.16 -26.01 -0.11 0.50 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.15 -0.96 6.54 -24.78 -0.16 -1.13 16 5 C -0.15 -1.10 6.57 -24.48 -0.16 -1.26 16 6 C 0.07 0.73 3.52 -25.70 -0.09 0.64 16 7 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 8 C 0.12 1.36 5.84 -4.04 -0.02 1.34 16 9 N -1.12 -15.45 5.87 -10.61 -0.06 -15.51 16 10 S 2.59 47.26 5.46 -107.50 -0.59 46.67 16 11 O -0.97 -20.66 18.08 -57.54 -1.04 -21.70 16 12 O -0.97 -20.16 17.50 -57.54 -1.01 -21.17 16 13 C -0.59 -11.46 6.01 37.16 0.22 -11.24 16 14 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 16 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 19 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 O -0.37 -4.07 10.61 -35.23 -0.37 -4.44 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.45 7.85 -51.93 -0.41 0.04 16 29 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.02 7.69 -51.92 -0.40 0.62 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.42 5.26 8.55 -34.47 -0.29 4.96 16 34 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 35 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -35.33 329.19 -9.05 -44.38 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.13 Total: 1.11 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -0.52 Total: -24.68 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.67 Total: -41.46 kcal Atomic # 8 Polarization: -44.89 SS G_CDS: -2.42 Total: -47.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 47.26 SS G_CDS: -0.59 Total: 46.67 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.33 -9.05 -44.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.769 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds