Wall clock time and date at job start Mon Mar 30 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.89329 * 2 1 4 4 C 1.54378 * 109.82837 * 239.07223 * 2 1 3 5 5 C 1.55309 * 102.25014 * 219.13100 * 4 2 1 6 6 C 1.54944 * 100.94264 * 34.13276 * 5 4 2 7 7 H 1.08994 * 110.31231 * 82.47388 * 6 5 4 8 8 C 1.53001 * 110.31101 * 204.64479 * 6 5 4 9 9 N 1.46497 * 109.47211 * 182.16666 * 8 6 5 10 10 S 1.65599 * 119.99799 * 164.99831 * 9 8 6 11 11 O 1.42102 * 104.27685 * 181.07042 * 10 9 8 12 12 O 1.42097 * 104.28015 * 308.92565 * 10 9 8 13 13 C 1.81397 * 104.45280 * 64.99964 * 10 9 8 14 14 C 1.52998 * 109.47535 * 179.97438 * 13 10 9 15 15 C 1.50699 * 109.47026 * 179.97438 * 14 13 10 16 16 H 1.07997 * 120.00406 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99510 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00566 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99787 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47044 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47136 * 119.99983 * 19 17 15 22 22 H 1.48504 * 109.46629 * 239.99949 * 19 17 15 23 23 O 1.43236 * 109.82846 * 120.93714 * 2 1 3 24 24 H 1.09002 * 109.47234 * 300.51656 * 1 2 3 25 25 H 1.09002 * 109.47126 * 60.51940 * 1 2 3 26 26 H 1.09002 * 109.47243 * 180.51822 * 1 2 3 27 27 H 1.08997 * 110.85123 * 100.93782 * 4 2 1 28 28 H 1.09007 * 110.84905 * 337.31125 * 4 2 1 29 29 H 1.09000 * 111.12311 * 276.21255 * 5 4 2 30 30 H 1.08999 * 111.16419 * 152.06915 * 5 4 2 31 31 H 1.09008 * 109.46663 * 302.16716 * 8 6 5 32 32 H 1.08999 * 109.47075 * 62.15925 * 8 6 5 33 33 H 0.97001 * 120.00427 * 344.99524 * 9 8 6 34 34 H 1.09005 * 109.46803 * 299.99965 * 13 10 9 35 35 H 1.08998 * 109.47060 * 59.99535 * 13 10 9 36 36 H 1.08997 * 109.46879 * 299.99975 * 14 13 10 37 37 H 1.08999 * 109.46708 * 60.00017 * 14 13 10 38 38 H 0.96994 * 120.00491 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7464 -1.2458 5 6 3.2730 -1.5221 -0.6768 6 6 2.7747 -1.8445 0.7544 7 1 2.1401 -2.7306 0.7435 8 6 3.9625 -2.0523 1.6961 9 7 3.4719 -2.4064 3.0303 10 16 4.5093 -3.0472 4.1508 11 8 3.6928 -3.2831 5.2897 12 8 5.1427 -4.1206 3.4685 13 6 5.6956 -1.7157 4.4830 14 6 6.7188 -2.1904 5.5168 15 6 7.7047 -1.0844 5.7922 16 1 7.6112 -0.1378 5.2808 17 6 8.7269 -1.2815 6.6964 18 7 8.8412 -2.4344 7.3188 19 14 9.9486 0.0896 7.0384 20 1 9.6028 1.2771 6.2165 21 1 9.8967 0.4512 8.4777 22 1 11.3177 -0.3698 6.6924 23 8 2.0159 -0.6927 1.1557 24 1 -0.3634 0.5218 0.8853 25 1 -0.3633 0.5058 -0.8946 26 1 -0.3634 -1.0276 0.0093 27 1 2.3671 -0.0424 -2.0166 28 1 1.3012 -1.4349 -1.6304 29 1 4.1620 -0.8920 -0.6507 30 1 3.4579 -2.4348 -1.2433 31 1 4.5919 -2.8566 1.3151 32 1 4.5446 -1.1326 1.7552 33 1 2.5395 -2.2654 3.2574 34 1 6.2090 -1.4478 3.5596 35 1 5.1659 -0.8452 4.8699 36 1 6.2051 -2.4580 6.4401 37 1 7.2486 -3.0610 5.1302 38 1 9.5600 -2.5729 7.9551 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416528067.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:55 Heat of formation + Delta-G solvation = -167.326383 kcal Electronic energy + Delta-G solvation = -19810.735172 eV Core-core repulsion = 16585.471871 eV Total energy + Delta-G solvation = -3225.263301 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61738 -38.15684 -37.02295 -36.27029 -35.88720 -33.18326 -33.11648 -32.35055 -28.37346 -27.58454 -24.63616 -23.60332 -22.49432 -21.60443 -20.24671 -19.07898 -18.37364 -17.96112 -17.37905 -17.04125 -16.70527 -16.49716 -16.01642 -15.30335 -15.06533 -14.60256 -14.44357 -14.24817 -13.96864 -13.71170 -13.44523 -13.27660 -13.17347 -13.10043 -12.94489 -12.79641 -12.77074 -12.58448 -12.24779 -12.10773 -11.86506 -11.72692 -11.67811 -11.64943 -11.17129 -10.65016 -10.49282 -10.32306 -8.25587 -6.39513 -0.65945 1.41339 1.42100 1.55477 1.85351 2.38549 2.80310 2.81911 3.07835 3.27114 3.56623 3.78590 3.92362 3.98725 4.14543 4.17080 4.18338 4.33769 4.47829 4.56672 4.59338 4.77219 4.79589 4.85222 4.96155 4.96773 5.09352 5.16616 5.28040 5.28764 5.29637 5.39309 5.69206 6.06628 6.09277 6.19474 6.74362 7.30608 8.86934 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.003883 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.262901 B = 7209.105911 C = 7787.148750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.063 3.937 3 H 0.081 0.919 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.073 3.927 7 H 0.080 0.920 8 C 0.105 3.895 9 N -1.107 6.107 10 S 2.623 3.377 11 O -1.002 7.002 12 O -0.995 6.995 13 C -0.588 4.588 14 C 0.019 3.981 15 C -0.538 4.538 16 H 0.075 0.925 17 C -0.005 4.005 18 N -0.934 5.934 19 Si 0.975 3.025 20 H -0.256 1.256 21 H -0.279 1.279 22 H -0.277 1.277 23 O -0.394 6.394 24 H 0.052 0.948 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.424 0.576 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.006 0.994 37 H 0.009 0.991 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.348 5.959 -20.078 25.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.006 3.994 3 H 0.099 0.901 4 C -0.181 4.181 5 C -0.188 4.188 6 C 0.014 3.986 7 H 0.098 0.902 8 C -0.021 4.021 9 N -0.868 5.868 10 S 2.720 3.280 11 O -0.992 6.992 12 O -0.985 6.985 13 C -0.720 4.720 14 C -0.020 4.020 15 C -0.577 4.577 16 H 0.093 0.907 17 C -0.203 4.203 18 N -0.574 5.574 19 Si 0.799 3.201 20 H -0.180 1.180 21 H -0.204 1.204 22 H -0.203 1.203 23 O -0.315 6.315 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.024 0.976 37 H 0.028 0.972 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.184 5.001 -19.460 24.594 hybrid contribution 0.507 0.862 0.536 1.135 sum -13.677 5.863 -18.923 24.073 Atomic orbital electron populations 1.22135 0.94453 1.02450 1.02716 1.22941 0.94817 0.96579 0.85045 0.90060 1.23185 0.97489 0.99908 0.97544 1.23324 0.99312 1.02533 0.93617 1.23202 0.91751 0.89766 0.93852 0.90202 1.21804 0.96991 1.02039 0.81256 1.55233 1.23508 1.83328 1.24779 1.04349 0.74762 0.76268 0.72621 1.93498 1.67448 1.85652 1.52587 1.93493 1.78271 1.52594 1.74138 1.30334 1.13946 1.18018 1.09704 1.18840 0.93423 0.97314 0.92431 1.21552 1.11619 1.00055 1.24507 0.90662 1.26130 1.00141 0.98572 0.95467 1.70105 1.33507 1.25619 1.28167 0.85247 0.77956 0.78768 0.78156 1.17962 1.20444 1.20257 1.88459 1.70782 1.40571 1.31679 0.92912 0.89800 0.92550 0.88273 0.89599 0.89247 0.87976 0.88539 0.89808 0.74049 0.83862 0.84270 0.97603 0.97228 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.44 71.98 0.68 -1.34 16 2 C 0.06 0.91 4.16 31.06 0.13 1.04 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.14 -1.42 6.54 31.86 0.21 -1.21 16 5 C -0.15 -1.75 6.57 32.05 0.21 -1.54 16 6 C 0.07 1.28 3.52 31.26 0.11 1.39 16 7 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 8 C 0.10 2.22 5.84 86.38 0.50 2.72 16 9 N -1.11 -29.08 5.87 -187.49 -1.10 -30.18 16 10 S 2.62 95.27 5.46 -56.49 -0.31 94.96 16 11 O -1.00 -43.30 18.08 -127.65 -2.31 -45.61 16 12 O -1.00 -41.46 17.50 -127.65 -2.23 -43.69 16 13 C -0.59 -22.54 6.01 71.98 0.43 -22.11 16 14 C 0.02 0.99 4.98 29.85 0.15 1.14 16 15 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 16 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 17 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 18 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 19 Si 0.98 43.53 29.54 68.60 2.03 45.55 16 20 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 O -0.39 -8.03 10.61 -148.98 -1.58 -9.61 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 0.73 7.85 -2.38 -0.02 0.71 16 29 H 0.09 0.98 8.06 -2.39 -0.02 0.96 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.96 7.69 -2.38 -0.02 1.95 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.42 10.22 8.55 -96.75 -0.83 9.39 16 34 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.14 4.81 8.14 -2.39 -0.02 4.79 16 36 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -76.64 329.19 -1.89 -78.52 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.21 Total: 16.57 kcal Atomic # 6 Polarization: -52.71 SS G_CDS: 3.12 Total: -49.59 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -0.82 Total: -87.11 kcal Atomic # 8 Polarization: -92.78 SS G_CDS: -6.12 Total: -98.90 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 95.27 SS G_CDS: -0.31 Total: 94.96 kcal Total: -76.64 -1.89 -78.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528067.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.802 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds