Wall clock time and date at job start Mon Mar 30 2020 01:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46824 * 2 1 4 4 H 1.08994 * 110.35107 * 52.86021 * 3 2 1 5 5 O 1.43645 * 110.30980 * 290.71171 * 3 2 1 6 6 C 1.43236 * 109.96939 * 216.65576 * 5 3 2 7 7 C 1.54439 * 107.60894 * 1.75219 * 6 5 3 8 8 C 1.54947 * 110.30568 * 174.99860 * 3 2 1 9 9 H 1.08995 * 111.12606 * 37.40570 * 8 3 2 10 10 N 1.46492 * 111.12591 * 273.27875 * 8 3 2 11 11 S 1.65606 * 120.00135 * 148.49936 * 10 8 3 12 12 O 1.42100 * 104.27450 * 308.93172 * 11 10 8 13 13 O 1.42093 * 104.28025 * 181.07088 * 11 10 8 14 14 C 1.81403 * 104.44724 * 64.99830 * 11 10 8 15 15 C 1.53001 * 109.47153 * 180.02562 * 14 11 10 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09007 * 109.46963 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46921 * 299.99779 * 1 2 3 26 26 H 1.08997 * 109.46946 * 59.99860 * 1 2 3 27 27 H 1.08999 * 109.46921 * 240.00220 * 2 1 3 28 28 H 1.08997 * 109.46946 * 120.00140 * 2 1 3 29 29 H 1.09008 * 109.82635 * 121.22904 * 6 5 3 30 30 H 1.09003 * 109.83232 * 242.19723 * 6 5 3 31 31 H 1.09002 * 110.82818 * 263.12585 * 7 6 5 32 32 H 1.09001 * 110.88560 * 139.49113 * 7 6 5 33 33 H 0.97001 * 120.00007 * 328.49749 * 10 8 3 34 34 H 1.09002 * 109.46959 * 60.00458 * 14 11 10 35 35 H 1.08998 * 109.47334 * 299.99936 * 14 11 10 36 36 H 1.09007 * 109.46922 * 59.99828 * 15 14 11 37 37 H 1.09003 * 109.46836 * 300.00583 * 15 14 11 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5846 2.0055 0.8146 5 8 1.7570 2.0714 -1.2601 6 6 2.8319 2.9458 -1.6228 7 6 3.9126 2.8381 -0.5247 8 6 3.5841 1.4670 0.1267 9 1 4.0371 0.6481 -0.4320 10 7 3.9991 1.4369 1.5313 11 16 5.4198 0.7013 1.9593 12 8 5.3456 -0.5825 1.3548 13 8 5.4765 0.8438 3.3719 14 6 6.7060 1.7050 1.1662 15 6 8.0819 1.1195 1.4902 16 6 9.1504 1.9536 0.8318 17 1 8.8758 2.8154 0.2417 18 6 10.4789 1.6166 0.9829 19 7 10.8135 0.5675 1.7019 20 14 11.8033 2.6502 0.1662 21 1 12.0796 2.1175 -1.1922 22 1 11.3391 4.0568 0.0614 23 1 13.0442 2.5977 0.9803 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.2491 2.6404 -2.5825 30 1 2.4690 3.9717 -1.6857 31 1 3.8109 3.6461 0.1997 32 1 4.9112 2.8307 -0.9617 33 1 3.4419 1.8478 2.2106 34 1 6.6494 2.7281 1.5380 35 1 6.5553 1.7018 0.0867 36 1 8.1383 0.0965 1.1181 37 1 8.2329 1.1223 2.5697 38 1 11.7480 0.3302 1.8078 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416552503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:52 Heat of formation + Delta-G solvation = -166.164746 kcal Electronic energy + Delta-G solvation = -20312.125755 eV Core-core repulsion = 17086.912826 eV Total energy + Delta-G solvation = -3225.212929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.74725 -38.18016 -37.05242 -35.96843 -35.89314 -34.43382 -33.12900 -31.36868 -28.59804 -27.58679 -24.40911 -23.64288 -22.57329 -21.88196 -20.44260 -19.17728 -18.39152 -18.04468 -17.16899 -17.04020 -16.58777 -16.52479 -16.05184 -15.20635 -14.91017 -14.85528 -14.50822 -14.44092 -14.11586 -13.82304 -13.72462 -13.23286 -13.14795 -13.06656 -12.93198 -12.79503 -12.60096 -12.55684 -12.22909 -12.12674 -11.95708 -11.77815 -11.75144 -11.69687 -11.17309 -10.63904 -10.50496 -10.34028 -8.25400 -6.39139 -0.72096 1.41974 1.43379 1.54363 1.74087 2.38507 2.76850 2.83333 3.08517 3.19951 3.51761 3.58067 3.92078 3.94349 4.08798 4.14118 4.20094 4.23237 4.35159 4.44944 4.62787 4.74662 4.82250 4.90949 4.91743 5.04577 5.13776 5.18139 5.28124 5.28815 5.29526 5.43394 5.69247 6.01436 6.06650 6.09227 6.74863 7.31204 8.86883 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.004555 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.992887 B = 6145.504628 C = 6853.199335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 C 0.086 3.914 4 H 0.091 0.909 5 O -0.389 6.389 6 C 0.050 3.950 7 C -0.181 4.181 8 C 0.107 3.893 9 H 0.103 0.897 10 N -1.092 6.092 11 S 2.618 3.382 12 O -0.995 6.995 13 O -0.996 6.996 14 C -0.585 4.585 15 C 0.019 3.981 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.973 3.027 21 H -0.271 1.271 22 H -0.257 1.257 23 H -0.285 1.285 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.428 0.572 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.702 6.054 -5.685 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.027 3.973 4 H 0.109 0.891 5 O -0.308 6.308 6 C -0.027 4.027 7 C -0.220 4.220 8 C -0.001 4.001 9 H 0.121 0.879 10 N -0.853 5.853 11 S 2.715 3.285 12 O -0.985 6.985 13 O -0.986 6.986 14 C -0.718 4.718 15 C -0.020 4.020 16 C -0.576 4.576 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.180 1.180 23 H -0.211 1.211 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.265 0.735 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.610 5.043 -5.321 20.002 hybrid contribution 1.187 0.748 -0.076 1.405 sum -17.423 5.791 -5.397 19.137 Atomic orbital electron populations 1.21686 0.94131 1.02110 1.02238 1.21756 0.97728 0.94499 1.02917 1.23185 0.92107 0.94661 0.87378 0.89113 1.88428 1.43277 1.61084 1.38025 1.23218 0.86521 0.95072 0.97886 1.23782 1.01340 0.97488 0.99363 1.22678 0.97051 0.99154 0.81220 0.87859 1.55143 1.39087 1.76514 1.14533 1.04536 0.75153 0.75153 0.73633 1.93511 1.86186 1.39654 1.79123 1.93514 1.86696 1.87397 1.31038 1.30371 1.11996 1.15143 1.14273 1.18829 0.90406 0.96124 0.96594 1.21518 0.91196 1.12866 1.32005 0.90400 1.26109 1.01786 0.96521 0.95821 1.70104 1.18615 1.27884 1.40845 0.85327 0.77541 0.79278 0.78193 1.19649 1.18046 1.21064 0.92103 0.92082 0.92497 0.91547 0.90735 0.90291 0.89512 0.87972 0.88399 0.73500 0.83580 0.83908 0.97521 0.97572 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.85 71.98 0.71 -1.67 16 2 C -0.13 -2.57 5.66 30.60 0.17 -2.40 16 3 C 0.09 1.61 3.08 31.26 0.10 1.70 16 4 H 0.09 1.44 8.02 -2.39 -0.02 1.42 16 5 O -0.39 -7.76 10.81 -148.98 -1.61 -9.37 16 6 C 0.05 0.77 7.80 72.47 0.56 1.34 16 7 C -0.18 -2.90 6.73 31.88 0.21 -2.69 16 8 C 0.11 2.19 3.07 46.45 0.14 2.33 16 9 H 0.10 2.35 7.51 -2.39 -0.02 2.33 16 10 N -1.09 -24.31 5.53 -163.37 -0.90 -25.21 16 11 S 2.62 88.12 5.45 -56.49 -0.31 87.81 16 12 O -1.00 -39.97 17.45 -127.65 -2.23 -42.20 16 13 O -1.00 -39.94 18.08 -127.65 -2.31 -42.25 16 14 C -0.59 -20.68 6.01 71.98 0.43 -20.25 16 15 C 0.02 0.98 4.98 29.85 0.15 1.13 16 16 C -0.54 -28.90 9.11 25.60 0.23 -28.67 16 17 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 18 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 19 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 20 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.98 7.99 -2.39 -0.02 0.96 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.52 7.59 -2.39 -0.02 1.50 16 33 H 0.43 7.38 8.73 -96.74 -0.84 6.54 16 34 H 0.15 4.42 8.14 -2.39 -0.02 4.40 16 35 H 0.14 4.30 7.59 -2.39 -0.02 4.28 16 36 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -73.74 328.10 -1.67 -75.41 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.20 Total: 16.22 kcal Atomic # 6 Polarization: -52.10 SS G_CDS: 3.18 Total: -48.92 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -0.62 Total: -81.16 kcal Atomic # 8 Polarization: -87.68 SS G_CDS: -6.15 Total: -93.82 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 88.12 SS G_CDS: -0.31 Total: 87.81 kcal Total: -73.74 -1.67 -75.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416552503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.756 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds