Wall clock time and date at job start Mon Mar 30 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47020 * 2 1 4 4 H 1.09005 * 109.47125 * 304.64268 * 3 2 1 5 5 C 1.53001 * 109.47248 * 184.64630 * 3 2 1 6 6 S 1.81402 * 109.47347 * 179.97438 * 5 3 2 7 7 O 1.42108 * 110.54026 * 291.61978 * 6 5 3 8 8 O 1.42102 * 110.54492 * 68.37078 * 6 5 3 9 9 N 1.65594 * 104.44961 * 180.02562 * 6 5 3 10 10 C 1.36941 * 119.99461 * 269.99621 * 9 6 5 11 11 H 1.07996 * 120.00618 * 307.18619 * 10 9 6 12 12 C 1.38820 * 119.99711 * 127.19380 * 10 9 6 13 13 N 1.31609 * 120.00211 * 347.49159 * 12 10 9 14 14 Si 1.86798 * 119.99715 * 167.49034 * 12 10 9 15 15 H 1.48504 * 109.47235 * 90.00156 * 14 12 10 16 16 H 1.48498 * 109.47047 * 210.00012 * 14 12 10 17 17 H 1.48503 * 109.47530 * 330.00051 * 14 12 10 18 18 C 1.46492 * 120.00670 * 89.99873 * 9 6 5 19 19 C 1.52999 * 117.50384 * 182.12015 * 18 9 6 20 20 C 1.53002 * 117.50348 * 113.45540 * 18 9 6 21 21 O 1.42898 * 109.47539 * 64.64295 * 3 2 1 22 22 C 1.42896 * 114.00138 * 254.81692 * 21 3 2 23 23 H 1.09002 * 109.47233 * 295.07354 * 1 2 3 24 24 H 1.08996 * 109.47177 * 55.07509 * 1 2 3 25 25 H 1.09004 * 109.47010 * 175.07102 * 1 2 3 26 26 H 1.08999 * 109.47593 * 239.99869 * 2 1 3 27 27 H 1.09004 * 109.47334 * 119.99776 * 2 1 3 28 28 H 1.09005 * 109.46762 * 299.99860 * 5 3 2 29 29 H 1.09004 * 109.47400 * 59.99784 * 5 3 2 30 30 H 0.97000 * 120.00659 * 185.05500 * 13 12 10 31 31 H 1.09001 * 115.54959 * 327.78807 * 18 9 6 32 32 H 1.09002 * 117.49811 * 359.97438 * 19 18 9 33 33 H 1.09004 * 117.50143 * 145.02141 * 19 18 9 34 34 H 1.08997 * 117.50271 * 214.98320 * 20 18 9 35 35 H 1.09003 * 117.49333 * 359.97438 * 20 18 9 36 36 H 1.09001 * 109.47516 * 295.05338 * 22 21 3 37 37 H 1.08997 * 109.47317 * 175.05250 * 22 21 3 38 38 H 1.09001 * 109.47444 * 55.05145 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6102 1.9798 -0.8455 5 6 3.5655 1.4441 -0.1168 6 16 4.1701 3.1544 -0.1176 7 8 3.7810 3.8203 -1.3113 8 8 3.9699 3.7547 1.1547 9 7 5.8147 3.0113 -0.2482 10 6 6.5856 2.9205 0.8800 11 1 6.4910 3.6615 1.6599 12 6 7.4890 1.8759 1.0210 13 7 7.4373 0.8461 0.2031 14 14 8.7783 1.9322 2.3716 15 1 8.2355 1.2997 3.6007 16 1 9.9901 1.1962 1.9300 17 1 9.1341 3.3452 2.6579 18 6 6.4448 2.9818 -1.5703 19 6 7.9627 2.7979 -1.6256 20 6 7.3440 4.1597 -1.9509 21 8 1.6548 2.0840 1.2174 22 6 0.5782 3.0120 1.0701 23 1 -0.3634 0.4355 0.9308 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3633 -1.0239 -0.0883 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9952 0.9068 0.7287 29 1 3.8593 0.9549 -1.0455 30 1 8.0192 0.0834 0.3461 31 1 5.8532 2.5236 -2.3629 32 1 8.4926 2.6993 -0.6781 33 1 8.3698 2.2192 -2.4548 34 1 7.3442 4.4763 -2.9939 35 1 7.4662 4.9569 -1.2176 36 1 0.8979 3.8424 0.4405 37 1 0.2877 3.3901 2.0502 38 1 -0.2722 2.5115 0.6070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420666176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:49 Heat of formation + Delta-G solvation = -107.187728 kcal Electronic energy + Delta-G solvation = -21278.477091 eV Core-core repulsion = 18055.821597 eV Total energy + Delta-G solvation = -3222.655494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.67653 -38.91995 -37.61808 -36.44975 -34.73229 -34.63064 -32.80348 -31.37689 -27.57972 -26.78276 -24.85517 -22.93686 -22.50088 -22.19522 -20.19732 -18.70225 -18.39896 -18.04343 -17.29285 -16.73609 -16.60679 -16.24166 -15.71620 -15.42307 -15.21025 -14.79393 -14.20518 -14.05711 -13.83366 -13.66198 -13.34083 -13.11247 -12.94741 -12.85704 -12.70285 -12.63908 -12.51166 -12.29304 -12.16439 -12.03977 -12.01102 -11.72520 -11.52735 -11.39387 -10.89077 -10.52471 -10.49683 -9.25712 -8.34152 -6.16744 -0.16900 1.46427 1.49343 1.58910 2.19551 2.48639 2.66842 2.89216 3.20490 3.46278 3.65306 3.72332 3.84191 3.99736 4.28926 4.32139 4.34691 4.39973 4.40462 4.50682 4.52278 4.55946 4.72510 4.76221 4.82725 4.99812 5.00844 5.04375 5.13502 5.33466 5.34898 5.45540 5.66011 5.87329 6.12191 6.49155 6.87683 7.41968 8.65037 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.006929 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.768960 B = 4039.948621 C = 4432.979568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.093 3.907 4 H 0.074 0.926 5 C -0.633 4.633 6 S 2.518 3.482 7 O -1.024 7.024 8 O -0.998 6.998 9 N -0.804 5.804 10 C -0.298 4.298 11 H 0.075 0.925 12 C 0.030 3.970 13 N -0.837 5.837 14 Si 0.962 3.038 15 H -0.273 1.273 16 H -0.265 1.265 17 H -0.266 1.266 18 C 0.090 3.910 19 C -0.138 4.138 20 C -0.202 4.202 21 O -0.401 6.401 22 C 0.013 3.987 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.280 0.720 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.103 0.897 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -3.432 -2.817 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.034 3.966 4 H 0.092 0.908 5 C -0.759 4.759 6 S 2.623 3.377 7 O -1.014 7.014 8 O -0.988 6.988 9 N -0.627 5.627 10 C -0.442 4.442 11 H 0.093 0.907 12 C -0.183 4.183 13 N -0.472 5.472 14 Si 0.785 3.215 15 H -0.198 1.198 16 H -0.190 1.190 17 H -0.190 1.190 18 C -0.018 4.018 19 C -0.177 4.177 20 C -0.242 4.242 21 O -0.321 6.321 22 C -0.083 4.083 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.136 0.864 29 H 0.156 0.844 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.122 0.878 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.664 -2.800 -2.751 7.735 hybrid contribution 0.559 -0.665 0.526 1.016 sum -6.105 -3.466 -2.225 7.365 Atomic orbital electron populations 1.21835 0.93786 1.03110 1.02188 1.21909 0.97720 0.93868 1.03310 1.21990 0.90765 0.96504 0.87316 0.90800 1.30847 1.04272 1.30265 1.10558 1.10356 0.75122 0.79790 0.72389 1.93334 1.84091 1.74713 1.49269 1.93350 1.85583 1.76166 1.43733 1.52474 1.18974 1.82913 1.08332 1.19323 1.17323 1.09384 0.98138 0.90750 1.26330 0.99830 0.93850 0.98245 1.70055 1.36996 1.04879 1.35286 0.85404 0.78269 0.79170 0.78625 1.19824 1.18971 1.19035 1.21156 0.93086 1.02338 0.85235 1.23017 0.95067 0.97106 1.02466 1.23439 1.06444 0.92711 1.01645 1.88017 1.53952 1.58424 1.31701 1.23194 0.89487 0.91600 1.04026 0.92424 0.91959 0.90639 0.89650 0.91635 0.86366 0.84414 0.90998 0.87263 0.88959 0.88633 0.87246 0.90500 0.95456 0.87837 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.83 71.98 0.64 -2.61 16 2 C -0.13 -3.57 5.64 30.59 0.17 -3.40 16 3 C 0.09 3.25 2.31 30.59 0.07 3.32 16 4 H 0.07 2.40 7.66 -2.38 -0.02 2.39 16 5 C -0.63 -25.67 5.90 71.98 0.42 -25.24 16 6 S 2.52 122.54 5.18 -56.49 -0.29 122.25 16 7 O -1.02 -51.73 17.25 -127.65 -2.20 -53.93 16 8 O -1.00 -54.87 16.45 -123.50 -2.03 -56.90 16 9 N -0.80 -39.87 2.94 -322.95 -0.95 -40.82 16 10 C -0.30 -15.42 8.20 84.03 0.69 -14.73 16 11 H 0.07 4.07 7.69 -2.91 -0.02 4.05 16 12 C 0.03 1.41 3.20 84.87 0.27 1.68 16 13 N -0.84 -39.38 11.47 21.65 0.25 -39.14 16 14 Si 0.96 38.15 29.52 68.60 2.02 40.18 16 15 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 16 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 18 C 0.09 4.00 5.40 44.99 0.24 4.24 16 19 C -0.14 -5.60 8.32 30.62 0.25 -5.35 16 20 C -0.20 -7.99 10.38 30.62 0.32 -7.67 16 21 O -0.40 -15.18 9.09 -142.55 -1.30 -16.48 16 22 C 0.01 0.38 10.37 113.37 1.18 1.56 16 23 H 0.06 1.25 7.03 -2.39 -0.02 1.23 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.12 5.11 8.14 -2.39 -0.02 5.09 16 29 H 0.14 5.04 8.14 -2.39 -0.02 5.03 16 30 H 0.28 12.26 8.32 -92.71 -0.77 11.49 16 31 H 0.11 4.54 8.12 -2.39 -0.02 4.52 16 32 H 0.09 4.10 5.17 -2.39 -0.01 4.09 16 33 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.10 2.70 8.14 -2.39 -0.02 2.69 16 38 H 0.08 1.72 6.54 -2.39 -0.02 1.71 16 Total: -1.00 -63.28 321.88 0.79 -62.49 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 1.03 Total: 30.54 kcal Atomic # 6 Polarization: -52.44 SS G_CDS: 4.26 Total: -48.19 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -0.70 Total: -79.95 kcal Atomic # 8 Polarization: -121.78 SS G_CDS: -5.53 Total: -127.31 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.02 Total: 40.18 kcal Atomic # 16 Polarization: 122.54 SS G_CDS: -0.29 Total: 122.25 kcal Total: -63.28 0.79 -62.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420666176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.698 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds