Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 S 1.65604 * 119.99753 * 164.99922 * 5 4 2 7 7 O 1.42103 * 104.27778 * 181.07011 * 6 5 4 8 8 O 1.42094 * 104.27796 * 308.92895 * 6 5 4 9 9 C 1.81405 * 104.44761 * 64.99813 * 6 5 4 10 10 C 1.53003 * 109.47058 * 179.97438 * 9 6 5 11 11 C 1.50698 * 109.46868 * 180.02562 * 10 9 6 12 12 H 1.07993 * 120.00331 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99706 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00026 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00190 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47543 * 89.99864 * 15 13 11 17 17 H 1.48506 * 109.47223 * 210.00376 * 15 13 11 18 18 H 1.48503 * 109.46905 * 329.99743 * 15 13 11 19 19 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 20 20 C 1.53001 * 117.51964 * 231.28841 * 19 2 1 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 2 22 22 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 23 23 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 24 24 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 25 25 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 27 27 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 28 28 H 0.96997 * 120.00544 * 344.99726 * 5 4 2 29 29 H 1.08995 * 109.47399 * 300.00064 * 9 6 5 30 30 H 1.09006 * 109.46879 * 60.00397 * 9 6 5 31 31 H 1.08995 * 109.47339 * 300.00433 * 10 9 6 32 32 H 1.09006 * 109.46680 * 60.00607 * 10 9 6 33 33 H 0.97006 * 119.99860 * 179.97438 * 14 13 11 34 34 H 1.09002 * 115.54973 * 85.58625 * 19 2 1 35 35 H 1.09001 * 117.49733 * 214.97413 * 20 19 2 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 2 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.51638 * 107.47550 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 16 2.2320 -0.3495 -3.9212 7 8 1.5366 0.5043 -4.8194 8 8 3.6282 -0.2019 -3.7028 9 6 1.8184 -2.0859 -4.2445 10 6 2.3981 -2.5050 -5.5970 11 6 2.0540 -3.9473 -5.8658 12 1 1.4789 -4.5088 -5.1445 13 6 2.4734 -4.5501 -7.0328 14 7 2.1735 -5.8089 -7.2672 15 14 3.4687 -3.5792 -8.2802 16 1 4.9156 -3.7225 -7.9787 17 1 3.1936 -4.0975 -9.6445 18 1 3.0879 -2.1455 -8.2094 19 6 2.0400 -0.7212 1.2493 20 6 3.0757 0.0040 2.1109 21 6 1.6373 -0.1482 2.6097 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.9702 1.4238 0.0004 26 1 3.1301 -0.7208 -1.2493 27 1 1.6767 -1.7489 -1.2492 28 1 0.8300 0.6134 -2.3730 29 1 2.2398 -2.7123 -3.4583 30 1 0.7349 -2.2042 -4.2617 31 1 1.9764 -1.8786 -6.3829 32 1 3.4816 -2.3867 -5.5801 33 1 2.4682 -6.2329 -8.0884 34 1 2.1253 -1.8046 1.1648 35 1 3.8425 -0.6023 2.5932 36 1 3.3942 0.9949 1.7876 37 1 1.0093 0.7428 2.6145 38 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443281089.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = -108.209797 kcal Electronic energy + Delta-G solvation = -20109.731355 eV Core-core repulsion = 16887.031542 eV Total energy + Delta-G solvation = -3222.699814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.72835 -36.71283 -35.82486 -35.54312 -34.44336 -33.96003 -31.49384 -30.85543 -26.72686 -25.97928 -23.07289 -22.58593 -21.33334 -20.25787 -19.01100 -17.74952 -17.43718 -17.02033 -16.31012 -15.65603 -15.46236 -15.06782 -14.55420 -14.44223 -14.25938 -13.61335 -13.11700 -13.03980 -12.80408 -12.61885 -12.22500 -11.91042 -11.81392 -11.72032 -11.67777 -11.62955 -11.29979 -11.25030 -11.19675 -10.83425 -10.46340 -10.41622 -10.16394 -10.11226 -9.82108 -9.50023 -9.15251 -8.67427 -6.17824 -4.19139 0.66907 3.00920 3.25898 3.33352 3.37752 3.42305 3.93715 4.11636 4.27753 4.34965 4.43357 4.57296 4.62254 4.74490 4.87637 5.02301 5.14079 5.26148 5.35001 5.40135 5.48784 5.51125 5.56675 5.57793 5.67387 5.81804 5.84028 5.90682 5.98013 6.26904 6.80525 6.91815 7.05536 7.40458 7.53675 8.35182 8.83091 9.41949 10.94533 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029573 B = 0.004180 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.586217 B = 6696.647830 C = 7065.785370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.158 3.842 3 O -0.552 6.552 4 C 0.092 3.908 5 N -1.119 6.119 6 S 2.592 3.408 7 O -0.967 6.967 8 O -0.968 6.968 9 C -0.584 4.584 10 C -0.007 4.007 11 C -0.520 4.520 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.187 4.187 20 C -0.177 4.177 21 C -0.166 4.166 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.378 0.622 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.415 0.585 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 10.936 18.650 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.115 3.885 3 O -0.359 6.359 4 C -0.035 4.035 5 N -0.878 5.878 6 S 2.689 3.311 7 O -0.957 6.957 8 O -0.958 6.958 9 C -0.717 4.717 10 C -0.047 4.047 11 C -0.559 4.559 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.534 5.534 15 Si 0.696 3.304 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.186 1.186 19 C -0.206 4.206 20 C -0.214 4.214 21 C -0.203 4.203 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.227 0.773 26 H 0.102 0.898 27 H 0.094 0.906 28 H 0.250 0.750 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.460 11.443 17.996 21.375 hybrid contribution 0.511 -0.279 -0.414 0.715 sum -0.949 11.163 17.581 20.848 Atomic orbital electron populations 1.21741 0.91899 1.02906 1.02970 1.20795 0.95088 0.81895 0.90680 1.86547 1.27132 1.25521 1.96709 1.21925 1.00181 0.96198 0.85221 1.55630 1.53170 1.56187 1.22801 1.05521 0.74435 0.78564 0.72548 1.93562 1.74787 1.64489 1.62864 1.93536 1.31648 1.86304 1.84299 1.30302 1.11397 1.20564 1.09400 1.19410 0.96223 1.00144 0.88891 1.20847 1.36047 0.93291 1.05693 0.90438 1.24987 0.95485 0.94812 0.97822 1.69882 1.45990 1.11292 1.26200 0.86921 0.81147 0.81263 0.81094 1.19669 1.20748 1.18606 1.23033 1.05218 1.00100 0.92235 1.22988 0.92686 1.02234 1.03505 1.22883 0.98070 1.03144 0.96211 0.91586 0.91574 0.90595 0.77310 0.89818 0.90644 0.74978 0.85833 0.85481 0.94914 0.95378 0.92373 0.86743 0.88648 0.88205 0.88429 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.51 37.16 0.32 -0.83 16 2 C 0.16 1.39 0.91 -90.62 -0.08 1.31 16 3 O -0.55 -5.34 12.00 -35.23 -0.42 -5.77 16 4 C 0.09 0.94 5.22 -4.04 -0.02 0.92 16 5 N -1.12 -13.68 5.61 -10.61 -0.06 -13.74 16 6 S 2.59 43.19 5.46 -107.50 -0.59 42.61 16 7 O -0.97 -19.07 18.08 -57.54 -1.04 -20.11 16 8 O -0.97 -18.61 17.50 -57.54 -1.01 -19.62 16 9 C -0.58 -10.43 6.01 37.16 0.22 -10.21 16 10 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 11 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 12 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 15 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 19 C -0.19 -1.41 5.15 -90.61 -0.47 -1.88 16 20 C -0.18 -1.23 9.74 -26.73 -0.26 -1.49 16 21 C -0.17 -1.17 9.67 -26.73 -0.26 -1.42 16 22 H 0.07 0.52 7.29 -51.93 -0.38 0.14 16 23 H 0.07 0.57 6.60 -51.93 -0.34 0.23 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.38 2.90 7.56 45.56 0.34 3.25 16 26 H 0.08 0.88 7.69 -51.93 -0.40 0.48 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.41 4.62 7.04 -34.47 -0.24 4.38 16 29 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.13 2.07 8.14 -51.92 -0.42 1.65 16 31 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 32 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.11 0.81 8.11 -51.93 -0.42 0.38 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.66 6.38 -51.93 -0.33 0.33 16 37 H 0.10 0.73 7.61 -51.93 -0.40 0.33 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -34.95 323.43 -8.29 -43.23 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.06 Total: 4.62 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -1.09 Total: -26.69 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.71 Total: -39.92 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -2.47 Total: -45.49 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 43.19 SS G_CDS: -0.59 Total: 42.61 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.95 -8.29 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443281089.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.975 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds