Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 S 1.65604 * 119.99753 * 164.99922 * 5 4 2 7 7 O 1.42103 * 104.27778 * 181.07011 * 6 5 4 8 8 O 1.42094 * 104.27796 * 308.92895 * 6 5 4 9 9 C 1.81405 * 104.44761 * 64.99813 * 6 5 4 10 10 C 1.53003 * 109.47058 * 179.97438 * 9 6 5 11 11 C 1.50698 * 109.46868 * 180.02562 * 10 9 6 12 12 H 1.07993 * 120.00331 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99706 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00026 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00190 * 0.02562 * 13 11 10 16 16 H 1.48491 * 109.47543 * 89.99864 * 15 13 11 17 17 H 1.48506 * 109.47223 * 210.00376 * 15 13 11 18 18 H 1.48503 * 109.46905 * 329.99743 * 15 13 11 19 19 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 20 20 C 1.53001 * 117.51964 * 231.28841 * 19 2 1 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 2 22 22 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 23 23 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 24 24 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 25 25 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 27 27 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 28 28 H 0.96997 * 120.00544 * 344.99726 * 5 4 2 29 29 H 1.08995 * 109.47399 * 300.00064 * 9 6 5 30 30 H 1.09006 * 109.46879 * 60.00397 * 9 6 5 31 31 H 1.08995 * 109.47339 * 300.00433 * 10 9 6 32 32 H 1.09006 * 109.46680 * 60.00607 * 10 9 6 33 33 H 0.97006 * 119.99860 * 179.97438 * 14 13 11 34 34 H 1.09002 * 115.54973 * 85.58625 * 19 2 1 35 35 H 1.09001 * 117.49733 * 214.97413 * 20 19 2 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 2 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.51638 * 107.47550 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 16 2.2320 -0.3495 -3.9212 7 8 1.5366 0.5043 -4.8194 8 8 3.6282 -0.2019 -3.7028 9 6 1.8184 -2.0859 -4.2445 10 6 2.3981 -2.5050 -5.5970 11 6 2.0540 -3.9473 -5.8658 12 1 1.4789 -4.5088 -5.1445 13 6 2.4734 -4.5501 -7.0328 14 7 2.1735 -5.8089 -7.2672 15 14 3.4687 -3.5792 -8.2802 16 1 4.9156 -3.7225 -7.9787 17 1 3.1936 -4.0975 -9.6445 18 1 3.0879 -2.1455 -8.2094 19 6 2.0400 -0.7212 1.2493 20 6 3.0757 0.0040 2.1109 21 6 1.6373 -0.1482 2.6097 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 2.9702 1.4238 0.0004 26 1 3.1301 -0.7208 -1.2493 27 1 1.6767 -1.7489 -1.2492 28 1 0.8300 0.6134 -2.3730 29 1 2.2398 -2.7123 -3.4583 30 1 0.7349 -2.2042 -4.2617 31 1 1.9764 -1.8786 -6.3829 32 1 3.4816 -2.3867 -5.5801 33 1 2.4682 -6.2329 -8.0884 34 1 2.1253 -1.8046 1.1648 35 1 3.8425 -0.6023 2.5932 36 1 3.3942 0.9949 1.7876 37 1 1.0093 0.7428 2.6145 38 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443281089.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = -136.438346 kcal Electronic energy + Delta-G solvation = -20110.955437 eV Core-core repulsion = 16887.031542 eV Total energy + Delta-G solvation = -3223.923896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39252 -38.16038 -37.03620 -36.50853 -35.88548 -35.27558 -33.46320 -31.60388 -27.87481 -27.49129 -23.77572 -23.17863 -23.10462 -20.96305 -20.26392 -19.37915 -18.64808 -18.09151 -17.33464 -17.05222 -16.52759 -16.37659 -15.93585 -15.64409 -15.09968 -15.05373 -14.80538 -13.92083 -13.77118 -13.69774 -13.26841 -13.22398 -13.15080 -13.06110 -13.00097 -12.93108 -12.84575 -12.23804 -12.22465 -11.94790 -11.92325 -11.70696 -11.40634 -11.30160 -11.01159 -10.83842 -10.80383 -10.31214 -8.36131 -6.41647 -0.69511 1.32395 1.34621 1.44495 1.81699 2.30029 2.77483 2.87446 2.98111 3.20847 3.35841 3.62314 3.75291 3.92365 3.97756 4.10259 4.16580 4.22456 4.42188 4.52773 4.58669 4.72984 4.83741 4.88189 4.93952 4.98139 5.08606 5.12229 5.15797 5.28691 5.33178 5.35117 5.48119 6.09970 6.17328 6.64573 6.78195 7.22891 8.79330 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029573 B = 0.004180 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.586217 B = 6696.647830 C = 7065.785370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.161 3.839 3 O -0.565 6.565 4 C 0.080 3.920 5 N -1.102 6.102 6 S 2.625 3.375 7 O -0.997 6.997 8 O -0.991 6.991 9 C -0.588 4.588 10 C -0.019 4.019 11 C -0.527 4.527 12 H 0.051 0.949 13 C 0.014 3.986 14 N -0.940 5.940 15 Si 0.924 3.076 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.250 1.250 19 C -0.191 4.191 20 C -0.178 4.178 21 C -0.164 4.164 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.385 0.615 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.423 0.577 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.031 0.969 32 H 0.032 0.968 33 H 0.269 0.731 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.164 11.993 19.683 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.119 3.881 3 O -0.373 6.373 4 C -0.047 4.047 5 N -0.865 5.865 6 S 2.720 3.280 7 O -0.987 6.987 8 O -0.981 6.981 9 C -0.720 4.720 10 C -0.058 4.058 11 C -0.566 4.566 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.580 5.580 15 Si 0.747 3.253 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.174 1.174 19 C -0.210 4.210 20 C -0.215 4.215 21 C -0.201 4.201 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.235 0.765 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.260 0.740 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.136 12.503 19.032 22.800 hybrid contribution 0.359 -0.621 -0.603 0.937 sum -0.777 11.881 18.428 21.940 Atomic orbital electron populations 1.21808 0.91588 1.03655 1.02889 1.20792 0.95333 0.81534 0.90446 1.86532 1.27954 1.26108 1.96722 1.22259 1.00400 0.97265 0.84755 1.55193 1.53214 1.56237 1.21856 1.04340 0.73578 0.77209 0.72834 1.93517 1.75281 1.65075 1.64837 1.93506 1.33367 1.86298 1.84937 1.30288 1.12252 1.22454 1.06979 1.19381 0.96808 0.97502 0.92075 1.21182 1.35020 0.95353 1.04999 0.93102 1.25861 0.96812 0.95728 1.00071 1.70007 1.47769 1.13030 1.27168 0.86035 0.80086 0.80370 0.78807 1.18478 1.20004 1.17401 1.23003 1.05791 1.00380 0.91812 1.23070 0.92845 1.02382 1.03199 1.22909 0.98025 1.03064 0.96111 0.91320 0.92040 0.89475 0.76482 0.89871 0.88734 0.73956 0.83936 0.84060 0.95104 0.94995 0.92143 0.86025 0.87947 0.88067 0.88983 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.51 71.98 0.61 -1.45 16 2 C 0.16 2.50 0.91 -10.79 -0.01 2.49 16 3 O -0.56 -9.92 12.00 -148.98 -1.79 -11.70 16 4 C 0.08 1.44 5.22 86.38 0.45 1.89 16 5 N -1.10 -24.63 5.61 -187.49 -1.05 -25.68 16 6 S 2.62 83.00 5.46 -56.49 -0.31 82.69 16 7 O -1.00 -37.94 18.08 -127.65 -2.31 -40.25 16 8 O -0.99 -36.45 17.50 -127.65 -2.23 -38.68 16 9 C -0.59 -20.12 6.01 71.98 0.43 -19.68 16 10 C -0.02 -0.86 4.05 29.85 0.12 -0.74 16 11 C -0.53 -29.36 9.66 25.60 0.25 -29.11 16 12 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 13 C 0.01 0.80 5.47 84.66 0.46 1.26 16 14 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 15 Si 0.92 43.60 27.47 68.60 1.88 45.49 16 16 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 19 C -0.19 -2.46 5.15 -10.79 -0.06 -2.52 16 20 C -0.18 -2.12 9.74 30.59 0.30 -1.82 16 21 C -0.16 -1.97 9.67 30.60 0.30 -1.68 16 22 H 0.07 0.96 7.29 -2.39 -0.02 0.94 16 23 H 0.06 0.94 6.60 -2.39 -0.02 0.92 16 24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.39 5.28 7.56 -74.06 -0.56 4.72 16 26 H 0.08 1.56 7.69 -2.39 -0.02 1.54 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.42 8.54 7.04 -96.75 -0.68 7.86 16 29 H 0.14 4.26 8.14 -2.39 -0.02 4.24 16 30 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 31 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 32 H 0.03 1.44 7.57 -2.38 -0.02 1.42 16 33 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 34 H 0.12 1.40 8.11 -2.39 -0.02 1.38 16 35 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.16 6.38 -2.39 -0.02 1.15 16 37 H 0.09 1.22 7.61 -2.39 -0.02 1.20 16 38 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -74.03 323.43 -2.88 -76.90 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.23 Total: 19.68 kcal Atomic # 6 Polarization: -54.21 SS G_CDS: 2.86 Total: -51.36 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -0.75 Total: -82.77 kcal Atomic # 8 Polarization: -84.31 SS G_CDS: -6.33 Total: -90.64 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.49 kcal Atomic # 16 Polarization: 83.00 SS G_CDS: -0.31 Total: 82.69 kcal Total: -74.03 -2.88 -76.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443281089.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.534 kcal (2) G-P(sol) polarization free energy of solvation -74.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds