Wall clock time and date at job start Mon Mar 30 2020 01:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47020 * 2 1 4 4 N 1.46504 * 109.46983 * 119.99686 * 2 1 3 5 5 C 1.46498 * 120.00184 * 114.39135 * 4 2 1 6 6 C 1.54036 * 113.81307 * 54.98011 * 5 4 2 7 7 O 1.44171 * 85.66656 * 268.17003 * 6 5 4 8 8 C 1.44444 * 93.22907 * 335.92826 * 7 6 5 9 9 S 1.65600 * 119.99822 * 294.39649 * 4 2 1 10 10 O 1.42093 * 104.28148 * 19.49762 * 9 4 2 11 11 O 1.42098 * 104.27691 * 147.36019 * 9 4 2 12 12 C 1.81408 * 104.44706 * 263.42562 * 9 4 2 13 13 C 1.53000 * 109.47143 * 180.02562 * 12 9 4 14 14 C 1.50696 * 109.46858 * 180.02562 * 13 12 9 15 15 H 1.07996 * 120.00495 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99808 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00133 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00147 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46913 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47194 * 119.99959 * 18 16 14 21 21 H 1.48501 * 109.47008 * 240.00028 * 18 16 14 22 22 H 1.09002 * 109.47300 * 307.78087 * 1 2 3 23 23 H 1.09001 * 109.47270 * 67.77688 * 1 2 3 24 24 H 1.08999 * 109.46983 * 187.77471 * 1 2 3 25 25 H 1.09001 * 109.46814 * 239.99540 * 2 1 3 26 26 H 1.09004 * 109.47144 * 180.56756 * 3 2 1 27 27 H 1.09007 * 109.47116 * 300.56026 * 3 2 1 28 28 H 1.08995 * 109.47507 * 60.56019 * 3 2 1 29 29 H 1.08997 * 113.00195 * 186.81161 * 5 4 2 30 30 H 1.09000 * 113.86409 * 22.38814 * 6 5 4 31 31 H 1.09002 * 113.86111 * 153.95776 * 6 5 4 32 32 H 1.08999 * 113.74838 * 269.91673 * 8 7 6 33 33 H 1.08995 * 114.05785 * 138.26778 * 8 7 6 34 34 H 1.09000 * 109.47127 * 300.00353 * 12 9 4 35 35 H 1.09002 * 109.46477 * 60.00004 * 12 9 4 36 36 H 1.08995 * 109.46759 * 299.99914 * 13 12 9 37 37 H 1.09001 * 109.46872 * 59.99924 * 13 12 9 38 38 H 0.96999 * 120.00161 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.7565 -1.9492 1.0655 6 6 3.9848 -1.8567 0.1406 7 8 3.0885 -2.2708 -0.9099 8 6 2.1745 -2.9079 0.0095 9 16 1.7358 -0.0484 2.6963 10 8 0.6539 0.8505 2.4947 11 8 1.5988 -1.1817 3.5425 12 6 3.2543 0.8617 3.0923 13 6 3.1162 1.5083 4.4721 14 6 4.3774 2.2648 4.8007 15 1 5.1957 2.2824 4.0962 16 6 4.4865 2.9346 6.0009 17 7 3.4902 2.9128 6.8591 18 14 6.0495 3.8731 6.4081 19 1 7.0123 3.7420 5.2851 20 1 5.7255 5.3069 6.6181 21 1 6.6535 3.3157 7.6450 22 1 -0.3634 0.6296 0.8122 23 1 -0.3634 0.3887 -0.9513 24 1 -0.3633 -1.0182 0.1390 25 1 1.8933 -0.5139 -0.8900 26 1 3.1300 1.4425 -0.0102 27 1 1.6685 1.9592 -0.8850 28 1 1.6849 1.9534 0.8949 29 1 2.9625 -2.4238 2.0248 30 1 4.3695 -0.8442 0.0185 31 1 4.7638 -2.5844 0.3681 32 1 2.3997 -3.9580 0.1954 33 1 1.1228 -2.7306 -0.2151 34 1 4.0996 0.1736 3.0968 35 1 3.4198 1.6357 2.3428 36 1 2.2708 2.1963 4.4679 37 1 2.9508 0.7340 5.2212 38 1 3.5669 3.3844 7.7033 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451595683.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:47 Heat of formation + Delta-G solvation = -109.681562 kcal Electronic energy + Delta-G solvation = -21109.221599 eV Core-core repulsion = 17886.457964 eV Total energy + Delta-G solvation = -3222.763634 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55611 -38.51588 -37.35296 -36.82301 -35.91633 -33.16109 -32.64937 -28.85824 -28.33498 -27.47106 -27.25713 -23.79015 -22.76744 -21.72620 -19.73270 -18.77180 -18.28159 -17.78186 -17.13641 -16.75003 -16.66635 -16.55685 -16.39349 -15.55238 -15.17273 -14.90107 -14.77082 -14.48050 -13.76313 -13.59413 -13.49694 -13.37524 -13.02695 -12.97411 -12.92277 -12.83020 -12.75151 -12.62871 -12.26407 -12.07963 -11.97739 -11.79568 -11.61403 -11.46624 -11.14444 -10.66569 -10.49975 -10.04781 -8.26999 -6.41128 -0.74385 1.40824 1.41216 1.54525 1.62797 2.37386 2.67285 2.81555 3.06620 3.15959 3.35852 3.56873 4.00897 4.04222 4.12752 4.17002 4.21897 4.34654 4.46183 4.50609 4.70174 4.72195 4.78558 4.79144 4.98972 5.00123 5.04718 5.17670 5.19505 5.24959 5.26320 5.37765 5.59233 5.67547 5.72774 6.05037 6.72723 7.29374 8.85580 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.005255 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.044289 B = 5327.114825 C = 5586.678013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.144 3.856 3 C -0.195 4.195 4 N -0.970 5.970 5 C 0.060 3.940 6 C 0.027 3.973 7 O -0.392 6.392 8 C 0.035 3.965 9 S 2.606 3.394 10 O -0.977 6.977 11 O -0.997 6.997 12 C -0.589 4.589 13 C 0.023 3.977 14 C -0.537 4.537 15 H 0.076 0.924 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.255 1.255 20 H -0.278 1.278 21 H -0.278 1.278 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.056 0.944 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.005 0.995 37 H 0.004 0.996 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 -9.391 -16.884 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.040 3.960 3 C -0.253 4.253 4 N -0.806 5.806 5 C -0.047 4.047 6 C -0.051 4.051 7 O -0.312 6.312 8 C -0.043 4.043 9 S 2.705 3.295 10 O -0.967 6.967 11 O -0.987 6.987 12 C -0.721 4.721 13 C -0.016 4.016 14 C -0.576 4.576 15 H 0.094 0.906 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.179 1.179 20 H -0.204 1.204 21 H -0.203 1.203 22 H 0.087 0.913 23 H 0.104 0.896 24 H 0.075 0.925 25 H 0.141 0.859 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.024 0.976 37 H 0.022 0.978 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.494 -9.420 -16.522 19.025 hybrid contribution 0.900 0.781 0.852 1.464 sum 0.406 -8.639 -15.670 17.898 Atomic orbital electron populations 1.22635 0.95306 1.02645 1.04256 1.21087 0.94033 0.92714 0.88169 1.22599 1.02537 0.95889 1.04312 1.57422 1.69418 1.31661 1.22127 1.23831 0.93307 0.85036 1.02561 1.24646 0.93437 1.02890 0.84171 1.89659 1.37403 1.74627 1.29465 1.24516 0.96342 0.97864 0.85586 1.05078 0.77330 0.74235 0.72845 1.93467 1.51486 1.67320 1.84444 1.93479 1.86855 1.50975 1.67396 1.30474 1.20390 1.13737 1.07505 1.18798 0.98395 0.95282 0.89122 1.21528 1.01180 1.31626 1.03220 0.90584 1.26114 1.00435 0.97515 0.96116 1.70106 1.33768 1.43882 1.09714 0.85271 0.78569 0.77869 0.78597 1.17850 1.20393 1.20335 0.91335 0.89571 0.92499 0.85933 0.90633 0.88591 0.93032 0.87001 0.88078 0.86629 0.86615 0.88531 0.84196 0.84150 0.97627 0.97768 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.56 9.04 71.98 0.65 -3.91 16 2 C 0.14 3.31 2.48 44.99 0.11 3.42 16 3 C -0.20 -4.44 8.32 71.98 0.60 -3.84 16 4 N -0.97 -25.17 2.82 -501.85 -1.42 -26.58 16 5 C 0.06 1.26 4.55 45.69 0.21 1.47 16 6 C 0.03 0.45 8.65 72.27 0.63 1.07 16 7 O -0.39 -7.60 10.62 -148.98 -1.58 -9.18 16 8 C 0.04 0.60 8.38 72.28 0.61 1.21 16 9 S 2.61 94.04 4.65 -56.49 -0.26 93.78 16 10 O -0.98 -39.57 12.92 -127.65 -1.65 -41.22 16 11 O -1.00 -41.62 16.86 -127.65 -2.15 -43.78 16 12 C -0.59 -22.26 6.05 71.98 0.44 -21.83 16 13 C 0.02 1.20 4.98 29.85 0.15 1.34 16 14 C -0.54 -29.52 9.11 25.60 0.23 -29.29 16 15 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 16 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 17 N -0.94 -56.77 13.29 21.45 0.28 -56.49 16 18 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 19 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 20 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H 0.07 2.09 5.55 -2.39 -0.01 2.07 16 23 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.29 7.75 -2.39 -0.02 1.27 16 25 H 0.12 2.44 5.69 -2.39 -0.01 2.43 16 26 H 0.07 1.50 8.10 -2.38 -0.02 1.48 16 27 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.05 1.46 5.74 -2.39 -0.01 1.44 16 29 H 0.11 2.38 7.24 -2.39 -0.02 2.37 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.64 7.55 -2.39 -0.02 1.62 16 34 H 0.14 4.57 8.14 -2.39 -0.02 4.55 16 35 H 0.14 4.70 7.09 -2.39 -0.02 4.69 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.08 314.96 0.37 -72.71 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.04 Total: 15.89 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 4.08 Total: -50.09 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.13 Total: -83.07 kcal Atomic # 8 Polarization: -88.79 SS G_CDS: -5.38 Total: -94.17 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 94.04 SS G_CDS: -0.26 Total: 93.78 kcal Total: -73.08 0.37 -72.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451595683.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.970 kcal (2) G-P(sol) polarization free energy of solvation -73.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds