Wall clock time and date at job start Mon Mar 30 2020 01:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47629 * 2 1 4 4 H 1.08998 * 109.47018 * 54.99811 * 3 2 1 5 5 C 1.53003 * 109.47418 * 175.00076 * 3 2 1 6 6 O 1.42896 * 109.47056 * 54.99717 * 5 3 2 7 7 N 1.46497 * 109.47143 * 294.99830 * 3 2 1 8 8 S 1.65605 * 119.99825 * 144.99484 * 7 3 2 9 9 O 1.42094 * 104.27990 * 308.93251 * 8 7 3 10 10 O 1.42108 * 104.27768 * 181.07308 * 8 7 3 11 11 C 1.81410 * 104.44690 * 65.00690 * 8 7 3 12 12 C 1.52992 * 109.46831 * 174.82809 * 11 8 7 13 13 C 1.50703 * 115.55287 * 295.18845 * 12 11 8 14 14 H 1.07995 * 119.99961 * 95.16981 * 13 12 11 15 15 C 1.37875 * 119.99547 * 274.89487 * 13 12 11 16 16 N 1.31506 * 120.00548 * 6.44972 * 15 13 12 17 17 Si 1.86805 * 119.99768 * 186.45163 * 15 13 12 18 18 H 1.48504 * 109.47006 * 59.99602 * 17 15 13 19 19 H 1.48495 * 109.47248 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46988 * 300.00358 * 17 15 13 21 21 C 1.53004 * 117.50217 * 80.86367 * 12 11 8 22 22 C 1.53005 * 117.49838 * 149.51734 * 12 11 8 23 23 H 1.09002 * 109.47028 * 300.00484 * 1 2 3 24 24 H 1.09006 * 109.47127 * 59.99596 * 1 2 3 25 25 H 1.08992 * 109.47746 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47214 * 240.00033 * 2 1 3 27 27 H 1.09006 * 109.47127 * 120.00404 * 2 1 3 28 28 H 1.08993 * 109.47098 * 175.00251 * 5 3 2 29 29 H 1.09005 * 109.47055 * 295.00378 * 5 3 2 30 30 H 0.96702 * 114.00185 * 180.02562 * 6 5 3 31 31 H 0.96993 * 120.00707 * 325.00440 * 7 3 2 32 32 H 1.08996 * 109.46949 * 54.82430 * 11 8 7 33 33 H 1.09004 * 109.46756 * 294.82401 * 11 8 7 34 34 H 0.97004 * 120.00423 * 185.03318 * 16 15 13 35 35 H 1.08995 * 117.49799 * 215.00360 * 21 12 11 36 36 H 1.09002 * 117.49683 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.49451 * 359.97438 * 22 12 11 38 38 H 1.09007 * 117.49625 * 144.96969 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 8 4.1293 0.6402 -0.9121 7 7 1.6526 2.0974 -1.2518 8 16 1.2559 3.7052 -1.2567 9 8 0.2921 3.8316 -0.2203 10 8 0.9172 3.9785 -2.6095 11 6 2.7943 4.5523 -0.8022 12 6 2.5904 6.0656 -0.8971 13 6 2.3172 6.5993 -2.2798 14 1 1.2999 6.7539 -2.6076 15 6 3.3662 6.8953 -3.1241 16 7 4.5975 6.5946 -2.7736 17 14 3.0385 7.7237 -4.7660 18 1 2.3815 9.0355 -4.5362 19 1 4.3233 7.9314 -5.4809 20 1 2.1497 6.8621 -5.5864 21 6 1.8988 6.7605 0.2776 22 6 3.4012 6.9488 0.0535 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9356 2.4653 0.0366 29 1 3.8499 1.0375 1.0960 30 1 5.0951 0.5954 -0.8937 31 1 1.6282 1.5894 -2.0777 32 1 3.5904 4.2495 -1.4823 33 1 3.0677 4.2859 0.2188 34 1 5.3415 6.8678 -3.3329 35 1 1.2462 7.6033 0.0503 36 1 1.5895 6.1394 1.1183 37 1 4.0796 6.4515 0.7468 38 1 3.7374 7.9155 -0.3214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563434903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:29 Heat of formation + Delta-G solvation = -110.381046 kcal Electronic energy + Delta-G solvation = -21084.409240 eV Core-core repulsion = 17861.615274 eV Total energy + Delta-G solvation = -3222.793966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.04610 -36.76652 -36.19487 -35.22741 -34.99838 -32.01890 -31.53731 -28.51422 -27.91911 -25.44251 -23.44716 -21.25025 -20.88505 -19.74654 -18.73593 -17.53948 -16.66580 -16.47701 -15.95911 -15.11999 -14.82041 -14.65552 -14.40599 -14.15211 -13.91570 -13.63541 -13.06503 -12.66851 -12.34890 -11.93113 -11.83149 -11.59502 -11.37279 -11.26656 -11.14684 -11.02046 -10.88221 -10.84430 -10.74747 -10.56768 -10.47495 -10.12220 -9.93520 -9.72788 -9.15501 -8.95300 -8.52531 -8.10440 -6.12523 -4.21351 1.12478 3.34543 3.36663 3.44262 3.46166 4.26411 4.40453 4.57230 4.71730 4.93890 5.04157 5.14776 5.16332 5.20557 5.31781 5.43082 5.47315 5.69221 5.70107 5.85914 5.90638 5.98162 6.07886 6.22720 6.32720 6.36293 6.44769 6.59330 6.68265 6.96453 7.22765 7.37262 7.40865 7.63047 7.83523 8.21123 8.84751 9.49513 10.96034 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.006324 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.489330 B = 4426.242092 C = 4490.566257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.150 3.850 4 H 0.101 0.899 5 C 0.049 3.951 6 O -0.563 6.563 7 N -1.117 6.117 8 S 2.604 3.396 9 O -0.979 6.979 10 O -0.945 6.945 11 C -0.555 4.555 12 C 0.043 3.957 13 C -0.507 4.507 14 H 0.070 0.930 15 C 0.080 3.920 16 N -0.878 5.878 17 Si 0.890 3.110 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.269 1.269 21 C -0.214 4.214 22 C -0.139 4.139 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.377 0.623 31 H 0.414 0.586 32 H 0.135 0.865 33 H 0.095 0.905 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -11.525 7.142 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C 0.042 3.958 4 H 0.119 0.881 5 C -0.031 4.031 6 O -0.368 6.368 7 N -0.874 5.874 8 S 2.701 3.299 9 O -0.969 6.969 10 O -0.935 6.935 11 C -0.688 4.688 12 C 0.040 3.960 13 C -0.544 4.544 14 H 0.088 0.912 15 C -0.125 4.125 16 N -0.513 5.513 17 Si 0.717 3.283 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.251 4.251 22 C -0.178 4.178 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.223 0.777 31 H 0.248 0.752 32 H 0.153 0.847 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.462 -11.234 6.851 13.239 hybrid contribution 1.463 0.319 -0.789 1.693 sum 0.002 -10.915 6.062 12.485 Atomic orbital electron populations 1.21797 0.95517 1.01186 1.02742 1.21626 0.96100 0.94980 1.02969 1.20906 0.91916 0.95738 0.87290 0.88144 1.22965 0.94650 0.95243 0.90264 1.86468 1.25147 1.71911 1.53306 1.55911 1.86714 1.29467 1.15289 1.05190 0.77560 0.72529 0.74671 1.93494 1.57722 1.85454 1.60256 1.93570 1.82720 1.82552 1.34650 1.30093 1.20303 1.10004 1.08389 1.18313 1.00826 0.85253 0.91581 1.20511 0.93644 1.44726 0.95510 0.91237 1.24923 0.94976 0.94637 0.97932 1.69995 0.98351 1.43922 1.39074 0.86671 0.77658 0.80205 0.83809 1.19994 1.21220 1.19417 1.23247 0.96477 1.04386 1.01007 1.22527 0.91187 1.02107 1.02013 0.92457 0.92265 0.92934 0.90568 0.91290 0.92509 0.92919 0.77658 0.75214 0.84692 0.88675 0.92814 0.89460 0.90684 0.91598 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.80 37.15 0.36 -1.40 16 2 C -0.12 -1.30 5.25 -26.74 -0.14 -1.44 16 3 C 0.15 1.93 2.60 -67.93 -0.18 1.75 16 4 H 0.10 1.27 7.48 -51.93 -0.39 0.88 16 5 C 0.05 0.55 6.87 37.16 0.26 0.81 16 6 O -0.56 -6.49 12.83 -35.23 -0.45 -6.94 16 7 N -1.12 -17.43 4.76 -4.89 -0.02 -17.46 16 8 S 2.60 52.79 5.32 -107.50 -0.57 52.22 16 9 O -0.98 -21.09 17.39 -57.54 -1.00 -22.09 16 10 O -0.94 -23.04 17.13 -57.54 -0.99 -24.02 16 11 C -0.56 -11.48 4.78 37.15 0.18 -11.31 16 12 C 0.04 1.03 1.34 -155.66 -0.21 0.82 16 13 C -0.51 -13.91 7.68 -34.44 -0.26 -14.18 16 14 H 0.07 1.96 7.82 -52.49 -0.41 1.55 16 15 C 0.08 2.18 5.39 -17.82 -0.10 2.08 16 16 N -0.88 -24.12 12.93 55.43 0.72 -23.41 16 17 Si 0.89 21.54 29.55 -169.99 -5.02 16.52 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.21 -4.65 9.96 -26.70 -0.27 -4.91 16 22 C -0.14 -3.13 9.44 -26.70 -0.25 -3.38 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.87 7.73 -51.93 -0.40 0.47 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.70 5.90 -51.93 -0.31 0.39 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.38 2.87 9.12 45.56 0.42 3.29 16 31 H 0.41 6.09 8.80 -34.47 -0.30 5.79 16 32 H 0.13 2.93 8.14 -51.93 -0.42 2.50 16 33 H 0.09 1.64 7.17 -51.92 -0.37 1.26 16 34 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 35 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -33.29 327.68 -8.12 -41.41 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.11 Total: 9.98 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -0.61 Total: -31.15 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.69 Total: -40.86 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -2.44 Total: -53.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -0.57 Total: 52.22 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.29 -8.12 -41.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563434903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.974 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds