Wall clock time and date at job start Mon Mar 30 2020 01:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47629 * 2 1 4 4 H 1.08998 * 109.47018 * 54.99811 * 3 2 1 5 5 C 1.53003 * 109.47418 * 175.00076 * 3 2 1 6 6 O 1.42896 * 109.47056 * 54.99717 * 5 3 2 7 7 N 1.46497 * 109.47143 * 294.99830 * 3 2 1 8 8 S 1.65605 * 119.99825 * 144.99484 * 7 3 2 9 9 O 1.42094 * 104.27990 * 308.93251 * 8 7 3 10 10 O 1.42108 * 104.27768 * 181.07308 * 8 7 3 11 11 C 1.81410 * 104.44690 * 65.00690 * 8 7 3 12 12 C 1.52992 * 109.46831 * 174.82809 * 11 8 7 13 13 C 1.50703 * 115.55287 * 295.18845 * 12 11 8 14 14 H 1.07995 * 119.99961 * 95.16981 * 13 12 11 15 15 C 1.37875 * 119.99547 * 274.89487 * 13 12 11 16 16 N 1.31506 * 120.00548 * 6.44972 * 15 13 12 17 17 Si 1.86805 * 119.99768 * 186.45163 * 15 13 12 18 18 H 1.48504 * 109.47006 * 59.99602 * 17 15 13 19 19 H 1.48495 * 109.47248 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46988 * 300.00358 * 17 15 13 21 21 C 1.53004 * 117.50217 * 80.86367 * 12 11 8 22 22 C 1.53005 * 117.49838 * 149.51734 * 12 11 8 23 23 H 1.09002 * 109.47028 * 300.00484 * 1 2 3 24 24 H 1.09006 * 109.47127 * 59.99596 * 1 2 3 25 25 H 1.08992 * 109.47746 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47214 * 240.00033 * 2 1 3 27 27 H 1.09006 * 109.47127 * 120.00404 * 2 1 3 28 28 H 1.08993 * 109.47098 * 175.00251 * 5 3 2 29 29 H 1.09005 * 109.47055 * 295.00378 * 5 3 2 30 30 H 0.96702 * 114.00185 * 180.02562 * 6 5 3 31 31 H 0.96993 * 120.00707 * 325.00440 * 7 3 2 32 32 H 1.08996 * 109.46949 * 54.82430 * 11 8 7 33 33 H 1.09004 * 109.46756 * 294.82401 * 11 8 7 34 34 H 0.97004 * 120.00423 * 185.03318 * 16 15 13 35 35 H 1.08995 * 117.49799 * 215.00360 * 21 12 11 36 36 H 1.09002 * 117.49683 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.49451 * 359.97438 * 22 12 11 38 38 H 1.09007 * 117.49625 * 144.96969 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 8 4.1293 0.6402 -0.9121 7 7 1.6526 2.0974 -1.2518 8 16 1.2559 3.7052 -1.2567 9 8 0.2921 3.8316 -0.2203 10 8 0.9172 3.9785 -2.6095 11 6 2.7943 4.5523 -0.8022 12 6 2.5904 6.0656 -0.8971 13 6 2.3172 6.5993 -2.2798 14 1 1.2999 6.7539 -2.6076 15 6 3.3662 6.8953 -3.1241 16 7 4.5975 6.5946 -2.7736 17 14 3.0385 7.7237 -4.7660 18 1 2.3815 9.0355 -4.5362 19 1 4.3233 7.9314 -5.4809 20 1 2.1497 6.8621 -5.5864 21 6 1.8988 6.7605 0.2776 22 6 3.4012 6.9488 0.0535 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.9356 2.4653 0.0366 29 1 3.8499 1.0375 1.0960 30 1 5.0951 0.5954 -0.8937 31 1 1.6282 1.5894 -2.0777 32 1 3.5904 4.2495 -1.4823 33 1 3.0677 4.2859 0.2188 34 1 5.3415 6.8678 -3.3329 35 1 1.2462 7.6033 0.0503 36 1 1.5895 6.1394 1.1183 37 1 4.0796 6.4515 0.7468 38 1 3.7374 7.9155 -0.3214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563434903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:29 Heat of formation + Delta-G solvation = -137.032362 kcal Electronic energy + Delta-G solvation = -21085.564928 eV Core-core repulsion = 17861.615274 eV Total energy + Delta-G solvation = -3223.949654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.02266 -38.56456 -37.87690 -36.78570 -36.11896 -34.06686 -32.60762 -29.98746 -29.09527 -27.47588 -24.34544 -22.99873 -21.88638 -21.51444 -20.29654 -18.73264 -18.35385 -17.91603 -17.20994 -16.82647 -16.60962 -16.06324 -15.65533 -15.54500 -15.07552 -15.01607 -14.59523 -13.76243 -13.73751 -13.56239 -13.25016 -13.16067 -12.91883 -12.88411 -12.84532 -12.81288 -12.44973 -12.34403 -12.18103 -11.87458 -11.85272 -11.70961 -11.56832 -10.87399 -10.76592 -10.54531 -10.37901 -9.86646 -8.19036 -6.31307 -0.47125 1.38306 1.41588 1.48375 2.03504 2.41107 2.97903 3.09432 3.35518 3.43985 3.49503 3.76038 4.01622 4.10137 4.22186 4.30378 4.43102 4.48245 4.56270 4.60442 4.63555 4.80182 4.84236 4.95808 4.96750 5.03858 5.16924 5.21666 5.43461 5.47562 5.50870 5.59274 5.73618 6.18532 6.23653 6.74377 6.97944 7.40257 8.88634 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021982 B = 0.006324 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.489330 B = 4426.242092 C = 4490.566257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.111 4.111 3 C 0.135 3.865 4 H 0.105 0.895 5 C 0.048 3.952 6 O -0.579 6.579 7 N -1.106 6.106 8 S 2.619 3.381 9 O -0.994 6.994 10 O -0.995 6.995 11 C -0.548 4.548 12 C 0.007 3.993 13 C -0.525 4.525 14 H 0.047 0.953 15 C 0.041 3.959 16 N -0.893 5.893 17 Si 0.932 3.068 18 H -0.268 1.268 19 H -0.274 1.274 20 H -0.280 1.280 21 C -0.202 4.202 22 C -0.135 4.135 23 H 0.054 0.946 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.393 0.607 31 H 0.419 0.581 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -12.811 8.595 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C 0.028 3.972 4 H 0.123 0.877 5 C -0.031 4.031 6 O -0.387 6.387 7 N -0.865 5.865 8 S 2.716 3.284 9 O -0.984 6.984 10 O -0.985 6.985 11 C -0.680 4.680 12 C 0.005 3.995 13 C -0.562 4.562 14 H 0.065 0.935 15 C -0.161 4.161 16 N -0.529 5.529 17 Si 0.757 3.243 18 H -0.193 1.193 19 H -0.199 1.199 20 H -0.206 1.206 21 C -0.239 4.239 22 C -0.174 4.174 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.243 0.757 31 H 0.254 0.746 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.746 -12.511 8.308 15.037 hybrid contribution 1.230 0.650 -1.194 1.833 sum 0.484 -11.861 7.115 13.839 Atomic orbital electron populations 1.21837 0.96034 1.02109 1.01632 1.21609 0.95582 0.93741 1.04086 1.21317 0.93480 0.96640 0.85752 0.87732 1.22950 0.93268 0.95071 0.91831 1.86424 1.26841 1.71785 1.53644 1.55505 1.86647 1.27545 1.16842 1.04447 0.77312 0.73379 0.73231 1.93465 1.58436 1.86212 1.60277 1.93499 1.83699 1.84046 1.37262 1.29942 1.19934 1.07748 1.10419 1.18447 1.03032 0.87267 0.90749 1.20681 0.92693 1.45245 0.97626 0.93471 1.25464 0.95082 0.95334 1.00264 1.70032 0.98548 1.44459 1.39899 0.86020 0.77810 0.79485 0.80974 1.19301 1.19859 1.20573 1.23303 0.95987 1.04050 1.00551 1.22492 0.92091 1.00998 1.01777 0.92641 0.94295 0.91079 0.90890 0.88598 0.93552 0.89563 0.75741 0.74636 0.85891 0.84974 0.92667 0.89912 0.88078 0.89158 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.80 71.98 0.71 -2.62 16 2 C -0.11 -2.15 5.25 30.59 0.16 -1.99 16 3 C 0.14 3.16 2.60 44.99 0.12 3.27 16 4 H 0.10 2.36 7.48 -2.39 -0.02 2.35 16 5 C 0.05 0.96 6.87 71.98 0.49 1.45 16 6 O -0.58 -11.85 12.83 -148.98 -1.91 -13.76 16 7 N -1.11 -33.41 4.76 -169.40 -0.81 -34.22 16 8 S 2.62 105.49 5.32 -56.49 -0.30 105.19 16 9 O -0.99 -42.02 17.39 -127.65 -2.22 -44.24 16 10 O -0.99 -49.71 17.13 -127.65 -2.19 -51.90 16 11 C -0.55 -22.07 4.78 71.98 0.34 -21.72 16 12 C 0.01 0.34 1.34 -52.93 -0.07 0.27 16 13 C -0.53 -29.27 7.68 25.60 0.20 -29.08 16 14 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 15 C 0.04 2.26 5.39 84.66 0.46 2.71 16 16 N -0.89 -49.08 12.93 21.45 0.28 -48.81 16 17 Si 0.93 44.49 29.55 68.60 2.03 46.51 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 21 C -0.20 -8.49 9.96 30.62 0.30 -8.18 16 22 C -0.13 -5.89 9.44 30.62 0.29 -5.60 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 0.95 7.75 -2.38 -0.02 0.94 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.49 7.73 -2.39 -0.02 1.47 16 27 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.05 1.01 5.90 -2.39 -0.01 1.00 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.39 4.99 9.12 -74.06 -0.68 4.31 16 31 H 0.42 12.12 8.80 -96.75 -0.85 11.27 16 32 H 0.12 5.28 8.14 -2.39 -0.02 5.26 16 33 H 0.13 4.20 7.17 -2.39 -0.02 4.18 16 34 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 35 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 36 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 Total: -1.00 -71.41 327.68 -2.58 -73.99 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.46 Total: 28.71 kcal Atomic # 6 Polarization: -64.48 SS G_CDS: 3.00 Total: -61.48 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -0.53 Total: -83.03 kcal Atomic # 8 Polarization: -103.58 SS G_CDS: -6.32 Total: -109.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 105.49 SS G_CDS: -0.30 Total: 105.19 kcal Total: -71.41 -2.58 -73.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563434903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.043 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds