Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50263 * 2 1 4 4 C 1.53039 * 109.52369 * 120.08294 * 2 1 3 5 5 C 1.53040 * 109.53771 * 58.59981 * 4 2 1 6 6 H 1.09003 * 109.49787 * 301.37952 * 5 4 2 7 7 C 1.53004 * 109.49443 * 181.31798 * 5 4 2 8 8 O 1.42903 * 109.46932 * 175.00142 * 7 5 4 9 9 C 1.52753 * 109.38521 * 61.24346 * 5 4 2 10 10 N 1.46929 * 109.00569 * 305.59059 * 9 5 4 11 11 S 1.65602 * 120.62531 * 233.58239 * 10 9 5 12 12 O 1.42104 * 104.27484 * 153.65000 * 11 10 9 13 13 O 1.42097 * 104.28129 * 25.79442 * 11 10 9 14 14 C 1.81401 * 104.45139 * 269.71692 * 11 10 9 15 15 C 1.50694 * 109.47154 * 180.02562 * 14 11 10 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.46923 * 118.74246 * 53.30699 * 10 9 5 24 24 H 1.08998 * 109.47168 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46857 * 300.06640 * 1 2 3 26 26 H 1.08999 * 109.46732 * 60.06368 * 1 2 3 27 27 H 1.09005 * 109.46091 * 178.62390 * 4 2 1 28 28 H 1.09003 * 109.46105 * 298.59608 * 4 2 1 29 29 H 1.08996 * 109.47359 * 294.99747 * 7 5 4 30 30 H 1.08997 * 109.47405 * 55.00209 * 7 5 4 31 31 H 0.96696 * 114.00117 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.51167 * 185.70590 * 9 5 4 33 33 H 1.09005 * 109.43606 * 65.42196 * 9 5 4 34 34 H 1.08998 * 109.46678 * 60.00327 * 14 11 10 35 35 H 1.09002 * 109.47098 * 300.00122 * 14 11 10 36 36 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.58767 * 66.43034 * 23 10 9 38 38 H 1.08999 * 109.58663 * 186.71429 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 1.5042 -2.1559 1.2657 6 1 0.4144 -2.1361 1.2547 7 6 1.9893 -2.8675 2.5304 8 8 1.3941 -4.1646 2.6051 9 6 2.0103 -2.9023 0.0328 10 7 1.6522 -2.1379 -1.1698 11 16 0.8196 -2.8554 -2.4086 12 8 0.1329 -1.7818 -3.0372 13 8 0.1077 -3.9153 -1.7849 14 6 2.1105 -3.5118 -3.5011 15 6 1.4698 -4.1962 -4.6809 16 1 0.3937 -4.2323 -4.7654 17 6 2.2574 -4.7763 -5.6527 18 7 1.6982 -5.3783 -6.6796 19 14 4.1186 -4.7145 -5.5062 20 1 4.5962 -5.9057 -4.7591 21 1 4.7219 -4.7065 -6.8631 22 1 4.5173 -3.4820 -4.7799 23 6 2.0413 -0.7234 -1.2498 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5149 0.8894 26 1 -0.3633 0.5128 -0.8906 27 1 3.1312 -0.7438 1.2348 28 1 1.6992 -0.1961 2.1389 29 1 3.0742 -2.9670 2.4980 30 1 1.7038 -2.2858 3.4068 31 1 1.6571 -4.6738 3.3839 32 1 1.5489 -3.8889 -0.0104 33 1 3.0939 -3.0057 0.0908 34 1 2.7209 -4.2288 -2.9522 35 1 2.7390 -2.6938 -3.8532 36 1 2.2523 -5.7861 -7.3633 37 1 3.1274 -0.6454 -1.2985 38 1 1.6024 -0.2735 -2.1403 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563435456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = -135.175306 kcal Electronic energy + Delta-G solvation = -21070.211639 eV Core-core repulsion = 17846.342513 eV Total energy + Delta-G solvation = -3223.869126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31398 -36.70401 -36.23154 -35.03151 -33.22028 -33.00053 -32.24097 -29.73856 -26.94270 -25.85788 -24.38236 -22.91657 -21.54960 -19.36121 -18.09628 -17.60769 -17.31564 -16.56022 -15.90876 -15.62803 -15.00998 -14.82943 -14.23224 -14.08592 -14.05539 -13.65418 -13.38117 -13.13369 -12.69823 -12.45480 -12.29272 -11.75720 -11.60289 -11.52594 -11.32944 -11.20801 -11.13264 -10.97573 -10.85092 -10.83250 -10.42749 -10.33443 -10.14169 -10.06239 -9.87756 -9.47844 -8.82036 -8.53742 -6.30013 -4.38558 1.17565 3.15370 3.22583 3.23958 3.42545 4.07150 4.23183 4.65194 4.68402 4.75067 4.85250 4.90523 4.97235 5.13758 5.18633 5.33691 5.38336 5.43461 5.48464 5.59025 5.65064 5.76069 5.85752 5.94836 5.98951 6.10743 6.14286 6.23196 6.27117 6.33107 6.48814 6.50722 6.98609 7.22883 7.54340 8.02342 8.62002 9.25495 10.81189 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.006020 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.569672 B = 4649.782703 C = 4983.195764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 H 0.079 0.921 4 C -0.103 4.103 5 C -0.104 4.104 6 H 0.088 0.912 7 C 0.083 3.917 8 O -0.568 6.568 9 C 0.128 3.872 10 N -1.009 6.009 11 S 2.602 3.398 12 O -0.969 6.969 13 O -0.967 6.967 14 C -0.474 4.474 15 C -0.533 4.533 16 H 0.085 0.915 17 C 0.088 3.912 18 N -0.881 5.881 19 Si 0.884 3.116 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.263 1.263 23 C 0.121 3.879 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.377 0.623 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.271 0.729 37 H 0.063 0.937 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.310 9.229 18.234 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.141 4.141 5 C -0.124 4.124 6 H 0.106 0.894 7 C 0.004 3.996 8 O -0.372 6.372 9 C 0.003 3.997 10 N -0.845 5.845 11 S 2.702 3.298 12 O -0.960 6.960 13 O -0.958 6.958 14 C -0.608 4.608 15 C -0.571 4.571 16 H 0.103 0.897 17 C -0.119 4.119 18 N -0.517 5.517 19 Si 0.710 3.290 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.188 1.188 23 C -0.005 4.005 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.223 0.777 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.107 9.303 17.424 20.175 hybrid contribution 1.969 -0.298 0.382 2.028 sum 6.076 9.005 17.806 20.858 Atomic orbital electron populations 1.21883 0.94778 1.02545 1.01580 1.21386 0.96765 0.98924 0.94881 0.90225 1.21476 1.00395 0.94381 0.97860 1.21460 1.02579 0.94616 0.93747 0.89411 1.22183 0.96179 0.84056 0.97143 1.86586 1.72611 1.28700 1.49350 1.21243 0.99523 0.95726 0.83229 1.58044 1.76024 1.18487 1.31899 1.05302 0.76783 0.73919 0.73819 1.93476 1.71357 1.54477 1.76641 1.93495 1.70281 1.57394 1.74609 1.28285 1.13554 1.07667 1.11303 1.20099 0.95160 1.37887 1.04001 0.89725 1.24906 0.99259 0.93422 0.94276 1.69877 1.36344 1.34711 1.10728 0.86697 0.84948 0.79331 0.78010 1.19640 1.20645 1.18792 1.21430 0.99401 0.80634 0.99053 0.92208 0.93032 0.92019 0.91700 0.91858 0.93613 0.93694 0.77708 0.88093 0.92181 0.90339 0.89914 0.91891 0.91872 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.71 37.16 0.32 -1.58 16 2 C -0.10 -1.11 3.21 -90.50 -0.29 -1.40 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.10 -1.01 4.71 -26.69 -0.13 -1.14 16 5 C -0.10 -1.25 2.22 -90.72 -0.20 -1.45 16 6 H 0.09 1.23 6.34 -51.93 -0.33 0.90 16 7 C 0.08 0.80 6.43 37.16 0.24 1.04 16 8 O -0.57 -6.40 13.30 -35.23 -0.47 -6.87 16 9 C 0.13 1.86 5.52 -3.93 -0.02 1.84 16 10 N -1.01 -16.42 2.67 -113.77 -0.30 -16.73 16 11 S 2.60 55.86 5.37 -107.50 -0.58 55.28 16 12 O -0.97 -22.64 16.59 -57.54 -0.95 -23.59 16 13 O -0.97 -23.39 16.58 -57.54 -0.95 -24.34 16 14 C -0.47 -10.98 5.00 36.00 0.18 -10.80 16 15 C -0.53 -15.26 9.68 -34.44 -0.33 -15.59 16 16 H 0.08 2.62 7.96 -52.49 -0.42 2.20 16 17 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 18 N -0.88 -26.55 13.96 55.43 0.77 -25.78 16 19 Si 0.88 20.81 27.47 -169.99 -4.67 16.14 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 23 C 0.12 1.62 5.83 -3.71 -0.02 1.60 16 24 H 0.06 0.89 5.97 -51.93 -0.31 0.58 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.38 2.34 9.12 45.56 0.42 2.76 16 32 H 0.10 1.69 6.69 -51.93 -0.35 1.34 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.68 7.57 -51.93 -0.39 1.29 16 35 H 0.08 1.78 7.20 -51.92 -0.37 1.40 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.38 6.86 -51.93 -0.36 1.02 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -35.48 312.77 -7.87 -43.35 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.08 Total: 2.89 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -0.35 Total: -25.07 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.47 Total: -42.50 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -2.38 Total: -54.80 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Atomic # 16 Polarization: 55.86 SS G_CDS: -0.58 Total: 55.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.48 -7.87 -43.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563435456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.826 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds