Wall clock time and date at job start Mon Mar 30 2020 02:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50263 * 2 1 4 4 C 1.53039 * 109.52369 * 120.08294 * 2 1 3 5 5 C 1.53040 * 109.53771 * 58.59981 * 4 2 1 6 6 H 1.09003 * 109.49787 * 301.37952 * 5 4 2 7 7 C 1.53004 * 109.49443 * 181.31798 * 5 4 2 8 8 O 1.42903 * 109.46932 * 175.00142 * 7 5 4 9 9 C 1.52753 * 109.38521 * 61.24346 * 5 4 2 10 10 N 1.46929 * 109.00569 * 305.59059 * 9 5 4 11 11 S 1.65602 * 120.62531 * 233.58239 * 10 9 5 12 12 O 1.42104 * 104.27484 * 153.65000 * 11 10 9 13 13 O 1.42097 * 104.28129 * 25.79442 * 11 10 9 14 14 C 1.81401 * 104.45139 * 269.71692 * 11 10 9 15 15 C 1.50694 * 109.47154 * 180.02562 * 14 11 10 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 11 18 18 N 1.31518 * 119.99792 * 179.72330 * 17 15 14 19 19 Si 1.86795 * 120.00009 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47088 * 89.99795 * 19 17 15 21 21 H 1.48495 * 109.47293 * 209.99997 * 19 17 15 22 22 H 1.48507 * 109.47015 * 329.99955 * 19 17 15 23 23 C 1.46923 * 118.74246 * 53.30699 * 10 9 5 24 24 H 1.08998 * 109.47168 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46857 * 300.06640 * 1 2 3 26 26 H 1.08999 * 109.46732 * 60.06368 * 1 2 3 27 27 H 1.09005 * 109.46091 * 178.62390 * 4 2 1 28 28 H 1.09003 * 109.46105 * 298.59608 * 4 2 1 29 29 H 1.08996 * 109.47359 * 294.99747 * 7 5 4 30 30 H 1.08997 * 109.47405 * 55.00209 * 7 5 4 31 31 H 0.96696 * 114.00117 * 180.02562 * 8 7 5 32 32 H 1.08997 * 109.51167 * 185.70590 * 9 5 4 33 33 H 1.09005 * 109.43606 * 65.42196 * 9 5 4 34 34 H 1.08998 * 109.46678 * 60.00327 * 14 11 10 35 35 H 1.09002 * 109.47098 * 300.00122 * 14 11 10 36 36 H 0.97000 * 119.99468 * 179.97438 * 18 17 15 37 37 H 1.08995 * 109.58767 * 66.43034 * 23 10 9 38 38 H 1.08999 * 109.58663 * 186.71429 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7230 1.2481 5 6 1.5042 -2.1559 1.2657 6 1 0.4144 -2.1361 1.2547 7 6 1.9893 -2.8675 2.5304 8 8 1.3941 -4.1646 2.6051 9 6 2.0103 -2.9023 0.0328 10 7 1.6522 -2.1379 -1.1698 11 16 0.8196 -2.8554 -2.4086 12 8 0.1329 -1.7818 -3.0372 13 8 0.1077 -3.9153 -1.7849 14 6 2.1105 -3.5118 -3.5011 15 6 1.4698 -4.1962 -4.6809 16 1 0.3937 -4.2323 -4.7654 17 6 2.2574 -4.7763 -5.6527 18 7 1.6982 -5.3783 -6.6796 19 14 4.1186 -4.7145 -5.5062 20 1 4.5962 -5.9057 -4.7591 21 1 4.7219 -4.7065 -6.8631 22 1 4.5173 -3.4820 -4.7799 23 6 2.0413 -0.7234 -1.2498 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5149 0.8894 26 1 -0.3633 0.5128 -0.8906 27 1 3.1312 -0.7438 1.2348 28 1 1.6992 -0.1961 2.1389 29 1 3.0742 -2.9670 2.4980 30 1 1.7038 -2.2858 3.4068 31 1 1.6571 -4.6738 3.3839 32 1 1.5489 -3.8889 -0.0104 33 1 3.0939 -3.0057 0.0908 34 1 2.7209 -4.2288 -2.9522 35 1 2.7390 -2.6938 -3.8532 36 1 2.2523 -5.7861 -7.3633 37 1 3.1274 -0.6454 -1.2985 38 1 1.6024 -0.2735 -2.1403 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563435456.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:02 Heat of formation + Delta-G solvation = -164.993511 kcal Electronic energy + Delta-G solvation = -21071.504654 eV Core-core repulsion = 17846.342513 eV Total energy + Delta-G solvation = -3225.162140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27194 -38.11148 -37.46430 -36.85493 -35.34681 -34.11482 -33.17053 -31.77778 -27.94025 -26.66114 -25.61940 -24.88021 -22.45501 -20.52853 -19.54949 -19.38197 -18.31074 -18.07921 -17.44481 -17.15019 -16.28540 -16.13219 -15.72135 -15.32526 -15.02989 -14.76306 -14.65399 -14.33943 -14.22931 -14.11689 -13.57385 -13.29039 -13.19416 -13.06213 -12.93292 -12.64600 -12.42624 -12.26153 -12.17069 -12.00971 -11.87394 -11.72942 -11.39210 -11.33983 -11.06787 -10.95542 -10.80115 -9.77077 -8.46797 -6.64079 -0.53622 1.31700 1.35223 1.46920 1.94306 2.26504 2.84491 3.01054 3.33647 3.38484 3.77033 3.91479 3.92085 4.08808 4.27409 4.35110 4.46622 4.48129 4.54258 4.62373 4.70362 4.74880 4.77403 4.86027 4.93435 5.01272 5.06522 5.10820 5.19605 5.30459 5.32736 5.43696 5.55310 5.79071 5.80603 6.40103 7.03488 7.04611 8.68828 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.006020 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.569672 B = 4649.782703 C = 4983.195764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.097 4.097 3 H 0.113 0.887 4 C -0.096 4.096 5 C -0.107 4.107 6 H 0.057 0.943 7 C 0.084 3.916 8 O -0.600 6.600 9 C 0.120 3.880 10 N -0.998 5.998 11 S 2.617 3.383 12 O -0.997 6.997 13 O -1.005 7.005 14 C -0.481 4.481 15 C -0.559 4.559 16 H 0.034 0.966 17 C 0.022 3.978 18 N -0.934 5.934 19 Si 0.956 3.044 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.230 1.230 23 C 0.107 3.893 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.396 0.604 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.277 0.723 37 H 0.099 0.901 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.079 11.099 20.884 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.117 4.117 3 H 0.131 0.869 4 C -0.133 4.133 5 C -0.127 4.127 6 H 0.076 0.924 7 C 0.006 3.994 8 O -0.409 6.409 9 C -0.005 4.005 10 N -0.837 5.837 11 S 2.717 3.283 12 O -0.987 6.987 13 O -0.995 6.995 14 C -0.614 4.614 15 C -0.598 4.598 16 H 0.052 0.948 17 C -0.179 4.179 18 N -0.571 5.571 19 Si 0.776 3.224 20 H -0.182 1.182 21 H -0.200 1.200 22 H -0.152 1.152 23 C -0.017 4.017 24 H 0.046 0.954 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.246 0.754 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.862 11.172 20.089 24.294 hybrid contribution 0.669 -0.873 -0.403 1.172 sum 8.531 10.299 19.686 23.799 Atomic orbital electron populations 1.21918 0.96719 1.00568 1.01939 1.21458 0.95102 1.00628 0.94469 0.86880 1.21475 1.01770 0.92294 0.97767 1.21502 1.00958 0.96516 0.93717 0.92437 1.22257 0.97262 0.83462 0.96462 1.86543 1.73469 1.29890 1.50992 1.21496 1.01210 0.94494 0.83251 1.57590 1.75699 1.19758 1.30654 1.04458 0.76668 0.73105 0.74109 1.93428 1.72416 1.55010 1.77884 1.93439 1.71659 1.59128 1.75311 1.28303 1.14535 1.08582 1.09997 1.20366 0.93464 1.39222 1.06715 0.94786 1.26104 1.05938 0.92451 0.93397 1.70032 1.39022 1.36009 1.12002 0.85580 0.76723 0.81222 0.78921 1.18172 1.19973 1.15247 1.21840 1.01526 0.78525 0.99843 0.95371 0.90772 0.93600 0.89118 0.89604 0.91284 0.91470 0.75449 0.91281 0.88897 0.88028 0.87399 0.91387 0.88288 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.71 71.98 0.63 -3.12 16 2 C -0.10 -1.81 3.21 -10.72 -0.03 -1.85 16 3 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 4 C -0.10 -1.41 4.71 30.62 0.14 -1.27 16 5 C -0.11 -2.31 2.22 -10.86 -0.02 -2.33 16 6 H 0.06 1.59 6.34 -2.39 -0.02 1.57 16 7 C 0.08 1.33 6.43 71.98 0.46 1.80 16 8 O -0.60 -12.61 13.30 -148.98 -1.98 -14.59 16 9 C 0.12 3.26 5.52 86.22 0.48 3.73 16 10 N -1.00 -31.22 2.67 -513.86 -1.37 -32.59 16 11 S 2.62 115.47 5.37 -56.49 -0.30 115.17 16 12 O -1.00 -48.57 16.59 -127.65 -2.12 -50.69 16 13 O -1.01 -51.22 16.58 -127.65 -2.12 -53.33 16 14 C -0.48 -22.10 5.00 71.23 0.36 -21.74 16 15 C -0.56 -33.22 9.68 25.60 0.25 -32.97 16 16 H 0.03 2.27 7.96 -2.91 -0.02 2.25 16 17 C 0.02 1.30 5.47 84.66 0.46 1.77 16 18 N -0.93 -58.32 13.96 21.45 0.30 -58.02 16 19 Si 0.96 41.67 27.47 68.60 1.88 43.55 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.23 -8.72 6.54 99.48 0.65 -8.07 16 23 C 0.11 2.58 5.83 86.36 0.50 3.08 16 24 H 0.03 0.85 5.97 -2.39 -0.01 0.83 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.40 4.20 9.12 -74.06 -0.68 3.53 16 32 H 0.07 2.32 6.69 -2.39 -0.02 2.31 16 33 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.10 4.18 7.57 -2.39 -0.02 4.16 16 35 H 0.11 4.39 7.20 -2.39 -0.02 4.37 16 36 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.17 6.86 -2.39 -0.02 2.15 16 Total: -1.00 -82.95 312.77 -2.16 -85.11 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.32 Total: 18.31 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 3.22 Total: -52.91 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -1.07 Total: -90.61 kcal Atomic # 8 Polarization: -112.40 SS G_CDS: -6.22 Total: -118.62 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.55 kcal Atomic # 16 Polarization: 115.47 SS G_CDS: -0.30 Total: 115.17 kcal Total: -82.95 -2.16 -85.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563435456.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.883 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds